uc011ced.1_intron_4_0_chr4_100057849

ATTGTTGCTGTTATTTTTTAAATTTGCTGTTATTCAACAAACTATATTTTGTGAAAAGTCTTGTTGTTTCCCTAATTTTTCTGTCTTGTAAATTGTCATCAAAAATATATAATGCTCAACATATTTTGTAGGAAAATGATCAGTGTTCCATTTATTATAACTTCTCTTTATTTGTATCACTCTTTTTTTTAATTTTCTAGTAATCTCAAAAGTCCTGCTAGTGATCAACAACTAATGGAAGACAAAACCA ................................................................................................................................(((((((.(((..((((...((..((..............))..))...)))).......))).)))))))................................................... ................................................................................................................113....................................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR039612(GSM531975) Human Normal Liver Tissue Sample 2. (liver)	SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver)	SRR039614(GSM531977) HBV-infected Liver Tissue. (liver)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex)	GSM532884(GSM532884) G871T. (cervix)	SRR040012(GSM532897) G648N. (cervix)	SRR040035(GSM532920) G001T. (cervix)
..................................................................................................................................................................................ACTCTTTTTTTTAATTTAAAG...................................................	21		37.00	0.00	14.00	16.00	-	5.00	-	2.00	-	-	-	-	-	-	-	-
..................................................................................................................................................................................ACTCTTTTTTTTAATTTTTTG...................................................	21		9.00	0.00	4.00	2.00	-	1.00	-	2.00	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATCACTCTTTTTTTTAAAAG.......................................................	20		9.00	0.00	2.00	6.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAGACA......	25	1	8.00	8.00	-	-	4.00	-	2.00	-	2.00	-	-	-	-	-	-	-
.....................................................................................................................................................................................................................................AACTAATGGAAGACAAAACC.	20	1	4.00	4.00	-	-	4.00	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAGA........	23	1	4.00	4.00	-	-	-	-	1.00	-	-	-	3.00	-	-	-	-	-
...................................................................................................................................................................................CTCTTTTTTTTAATTTAAG....................................................	19		3.00	0.00	-	-	-	1.00	-	2.00	-	-	-	-	-	-	-	-
..............................................................................................................................................................................................................CAAAAGTCCTGCTAGTGATCAACA....................	24	1	3.00	3.00	-	-	3.00	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAGACAA.....	26	1	3.00	3.00	-	-	1.00	-	-	-	-	2.00	-	-	-	-	-	-
...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAGATA......	25	1	3.00	4.00	-	-	1.00	-	1.00	-	1.00	-	-	-	-	-	-	-
.................................................................................................................................................................................CACTCTTTTTTTTAATTTG......................................................	19		3.00	0.00	2.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................ACTCTTTTTTTTAATTTAAAA...................................................	21		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................ACTCTTTTTTTTAATCAG......................................................	18		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................................................................................................TGATCAACAACTAATGGAAGAC.......	22	1	2.00	2.00	-	-	2.00	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................................CACTCTTTTTTTTAATTTAAAG...................................................	22		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAG.........	22	1	2.00	2.00	-	-	1.00	-	1.00	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................................................AAAAGTCCTGCTAGTGATCAACAA...................	24	1	2.00	2.00	-	-	-	-	-	-	2.00	-	-	-	-	-	-	-
...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAATACA......	25		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-
..................................................................................................................................................................................ACTCTTTTTTTTAATTTTATG...................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................ACTCTTTTTTTTAATTTACG....................................................	20		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-
................................................................................................................................................................................TCACTCTTTTTTTTATTAC.......................................................	19		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................ATCACTCTTTTTTTTCTTG........................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-
.................................................................................................................................................................................CACTCTTTTTTTTAACCAG......................................................	19		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-
............................................................................................................................................................................................................................GTGATCAACAACTAATGGAAGATA......	24		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................ACTCTTTTTTTTAATTTACAG...................................................	21		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................................................TAATCTCAAAAGTCCTGCTA..............................	20	1	1.00	1.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
..........................................................................................................................................................................................................ATCTCAAAAGTCCTGCTA..............................	18	1	1.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................AACATATTTTGTAGGAAAATGAT..............................................................................................................	23	1	1.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................................................AAAGTCCTGCTAGTGATCAACA....................	22	1	1.00	1.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAGAC.......	24	1	1.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................................................................AGTGATCAACAACTAATGG............	19	1	1.00	1.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................ACTCTTTTTTTTAATTTATAG...................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................................................AAAAGTCCTGCTAGTGATCAACAAC..................	25	1	1.00	1.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-
............................................................................................................................................................................................................................GTGATCAACAACTAATGGAAGACA......	24	1	1.00	1.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
.....................................................................................................................................................................................................................................AACTAATGGAAGACAAAAC..	19	1	1.00	1.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TCACTCTTTTTTTTAATCTTC.....................................................	21		1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-
....................................................................................................................................................................................TCTTTTTTTTAATTTTCTTCTG................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TCACTCTTTTTTTTAATTTG......................................................	20	4	0.50	0.25	0.25	-	-	0.25	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................................................................ACAACTAATGGAAGACAA.....	18	3	0.33	0.33	-	-	0.33	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TCACTCTTTTTTTTAATTTCCCG...................................................	23	4	0.25	0.25	-	0.25	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TCACTCTTTTTTTTAATTT.......................................................	19	4	0.25	0.25	-	-	-	0.25	-	-	-	-	-	-	-	-	-	-

ATTGTTGCTGTTATTTTTTAAATTTGCTGTTATTCAACAAACTATATTTTGTGAAAAGTCTTGTTGTTTCCCTAATTTTTCTGTCTTGTAAATTGTCATCAAAAATATATAATGCTCAACATATTTTGTAGGAAAATGATCAGTGTTCCATTTATTATAACTTCTCTTTATTTGTATCACTCTTTTTTTTAATTTTCTAGTAATCTCAAAAGTCCTGCTAGTGATCAACAACTAATGGAAGACAAAACCA
................................................................................................................................(((((((.(((..((((...((..((..............))..))...)))).......))).)))))))...................................................
................................................................................................................113....................................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)

SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)

SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

GSM532884(GSM532884)
G871T. (cervix)

SRR040012(GSM532897)
G648N. (cervix)

SRR040035(GSM532920)
G001T. (cervix)

..................................................................................................................................................................................ACTCTTTTTTTTAATTTAAAG...................................................

37.00

0.00

14.00

16.00

5.00

2.00

..................................................................................................................................................................................ACTCTTTTTTTTAATTTTTTG...................................................

9.00

0.00

4.00

2.00

1.00

2.00

...............................................................................................................................................................................ATCACTCTTTTTTTTAAAAG.......................................................

9.00

0.00

2.00

6.00

1.00

...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAGACA......

8.00

4.00

2.00

.....................................................................................................................................................................................................................................AACTAATGGAAGACAAAACC.

4.00

...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAGA........

4.00

1.00

3.00

...................................................................................................................................................................................CTCTTTTTTTTAATTTAAG....................................................

3.00

0.00

1.00

2.00

..............................................................................................................................................................................................................CAAAAGTCCTGCTAGTGATCAACA....................

3.00

...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAGACAA.....

3.00

1.00

2.00

...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAGATA......

3.00

4.00

1.00

.................................................................................................................................................................................CACTCTTTTTTTTAATTTG......................................................

3.00

0.00

2.00

1.00

..................................................................................................................................................................................ACTCTTTTTTTTAATTTAAAA...................................................

2.00

0.00

1.00

..................................................................................................................................................................................ACTCTTTTTTTTAATCAG......................................................

2.00

0.00

2.00

.............................................................................................................................................................................................................................TGATCAACAACTAATGGAAGAC.......

2.00

.................................................................................................................................................................................CACTCTTTTTTTTAATTTAAAG...................................................

2.00

0.00

2.00

...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAG.........

2.00

1.00

...............................................................................................................................................................................................................AAAAGTCCTGCTAGTGATCAACAA...................

2.00

...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAATACA......

1.00

0.00

1.00

..................................................................................................................................................................................ACTCTTTTTTTTAATTTTATG...................................................

1.00

0.00

1.00

..................................................................................................................................................................................ACTCTTTTTTTTAATTTACG....................................................

1.00

0.00

1.00

................................................................................................................................................................................TCACTCTTTTTTTTATTAC.......................................................

1.00

0.00

1.00

...............................................................................................................................................................................ATCACTCTTTTTTTTCTTG........................................................

1.00

0.00

1.00

.................................................................................................................................................................................CACTCTTTTTTTTAACCAG......................................................

1.00

0.00

1.00

............................................................................................................................................................................................................................GTGATCAACAACTAATGGAAGATA......

1.00

0.00

1.00

..................................................................................................................................................................................ACTCTTTTTTTTAATTTACAG...................................................

1.00

0.00

1.00

........................................................................................................................................................................................................TAATCTCAAAAGTCCTGCTA..............................

1.00

..........................................................................................................................................................................................................ATCTCAAAAGTCCTGCTA..............................

1.00

.....................................................................................................................AACATATTTTGTAGGAAAATGAT..............................................................................................................

1.00

................................................................................................................................................................................................................AAAGTCCTGCTAGTGATCAACA....................

1.00

...........................................................................................................................................................................................................................AGTGATCAACAACTAATGGAAGAC.......

1.00

...........................................................................................................................................................................................................................AGTGATCAACAACTAATGG............

1.00

..................................................................................................................................................................................ACTCTTTTTTTTAATTTATAG...................................................

1.00

0.00

1.00

...............................................................................................................................................................................................................AAAAGTCCTGCTAGTGATCAACAAC..................

1.00

............................................................................................................................................................................................................................GTGATCAACAACTAATGGAAGACA......

1.00

.....................................................................................................................................................................................................................................AACTAATGGAAGACAAAAC..

1.00

................................................................................................................................................................................TCACTCTTTTTTTTAATCTTC.....................................................

1.00

0.00

1.00

....................................................................................................................................................................................TCTTTTTTTTAATTTTCTTCTG................................................

1.00

0.00

1.00

................................................................................................................................................................................TCACTCTTTTTTTTAATTTG......................................................

0.50

0.25

...................................................................................................................................................................................................................................ACAACTAATGGAAGACAA.....

0.33

................................................................................................................................................................................TCACTCTTTTTTTTAATTTCCCG...................................................

0.25

................................................................................................................................................................................TCACTCTTTTTTTTAATTT.......................................................

0.25