uc011cdt.1_intron_14_0_chr4_94690602

TTGTAGATAATCTTATCTCAGAATTGGAATCCCCCAGAACTTAGCACAGTGCCTGGCTCATACTAGGTGCTCAATAAATATTTGTTAAATGAATAAACCCCAAAGTTCAGTTAATTACATGTTTGCTGAACTACTTTTTTTTTTTTAACCATCAAAGCTAGTACTGATGAGAACCTTATTTTCTTTTTCTTCATCTCCAGGATGACAAGGAAATTGACCTGGAGCACCTCCATAGACGTGTAAATAGCTT .............................................................................................................................(((.((((((((................)))).))))...((((((((.............)))).))))..))).................................................. ...........................................................................................................................124.........................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver)	SRR330907(SRX091745) tissue: normal skindisease state: normal. (skin)	SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................AACTACTTTTTTTTTTTTAATTTG..................................................................................................	24		5.00	0.00	3.00	1.00	1.00	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTATG.....................................................................................................	20		4.00	0.00	2.00	1.00	1.00	-	-	-	-	-	-	-
..................................................................................................................................CTACTTTTTTTTTTTTACAG....................................................................................................	20		4.00	0.00	1.00	-	3.00	-	-	-	-	-	-	-
................................................................................................................................AACTACTTTTTTTTTTTTAAG.....................................................................................................	21		4.00	0.00	1.00	2.00	1.00	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTGTG......................................................................................................	19		3.00	0.00	1.00	-	2.00	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTCTCG....................................................................................................	21		3.00	0.00	-	-	-	2.00	1.00	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTCTGG....................................................................................................	21		3.00	0.00	-	-	-	-	3.00	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTATTTG...................................................................................................	22		2.00	0.00	1.00	-	1.00	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTCCCG....................................................................................................	21		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTCCG.....................................................................................................	20		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-
...................................................................................................................................TACTTTTTTTTTTTTAACCG...................................................................................................	20		2.00	0.00	1.00	-	-	1.00	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTCGG.....................................................................................................	20		2.00	0.00	-	1.00	-	-	1.00	-	-	-	-	-
..................................................................................................................................CTACTTTTTTTTTTTTACTTG...................................................................................................	21		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTCCGG....................................................................................................	21		2.00	0.00	1.00	-	1.00	-	-	-	-	-	-	-
................................................................................................................................AACTACTTTTTTTTTTTCCTG.....................................................................................................	21		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-
......................................................................................................................................................................................................AGGATGACAAGGAAAAGAA.................................	19		1.00	0.00	-	-	-	-	-	-	-	1.00	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTATTAG...................................................................................................	22		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-
..................................................................................................................................CTACTTTTTTTTTTTTACTTT...................................................................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-
..................................................................................................................................CTACTTTTTTTTTTTCCG......................................................................................................	18		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTCTGC....................................................................................................	21		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-
................................................................................................................................AACTACTTTTTTTTTTTTATTG....................................................................................................	22		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTCCCG.....................................................................................................	20		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
.....................................................................................................................................CTTTTTTTTTTTTAACCAATAG...............................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTATCG....................................................................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTGCG......................................................................................................	19		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTCGC......................................................................................................	19		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-
............................................................................................................................................................................ACCTTATTTTCTTTTTAATG..........................................................	20		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTAAATCC..................................................................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-
..................................................................................................................................CTACTTTTTTTTTTTTACCCT...................................................................................................	21		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-
......................................................................................................................................TTTTTTTTTTTTAACCATCATG..............................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-
................................................................................................................................AACTACTTTTTTTTTTTTCTTG....................................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTATAG....................................................................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-
.....................................................................................................................................CTTTTTTTTTTTTAACCAAACG...............................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
................................................................................................................................AACTACTTTTTTTTTTTTCCTG....................................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
....................................................................................................................................ACTTTTTTTTTTTTAACGTG..................................................................................................	20		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTCTCG.....................................................................................................	20		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-
....................................................................................................................................ACTTTTTTTTTTTTAACCTTGG................................................................................................	22		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-
................................................................................................................................AACTACTTTTTTTTTTTTAAAAG...................................................................................................	23		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTCCCC.....................................................................................................	20		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTCTAG....................................................................................................	21		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTATAT....................................................................................................	21		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTGTGT.....................................................................................................	20		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-
....................................................................................................................................ACTTTTTTTTTTTTAACCGG..................................................................................................	20		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-
..................................................................................................................................CTACTTTTTTTTTTTTAGTTG...................................................................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTAATTTG..................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTCCGC.....................................................................................................	20		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-
................................................................................................................................AACTACTTTTTTTTTAAAG.......................................................................................................	19		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTAAATCA..................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................ACCTTATTTTCTTTTTTTG...........................................................	19		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-
....................................................................................................................................ACTTTTTTTTTTTTAACCGT..................................................................................................	20		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTCAAG.....................................................................................................	20		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTCCGC....................................................................................................	21		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTATTG....................................................................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTAATGGA..................................................................................................	23		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-
....................................................................................................................................ACTTTTTTTTTTTTAACCAAACG...............................................................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTCCCC....................................................................................................	21		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-
..................................................................................................................................CTACTTTTTTTTTTTTACCAG...................................................................................................	21		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-
................................................................................................................................AACTACTTTTTTTTTTAAAG......................................................................................................	20		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
..................................................................................................................................CTACTTTTTTTTTTTCATG.....................................................................................................	19		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTCGAG....................................................................................................	21		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTAGACG...................................................................................................	22		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-
...............................................................................................................................................................................TTATTTTCTTTTTCTGTTC........................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-
.................................................................................................................................ACTACTTTTTTTTTTTCTAG.....................................................................................................	20		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTAAACTA..................................................................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-
.................................................................................................................................ACTACTTTTTTTTTTTTAACC....................................................................................................	21	2	0.50	0.50	-	-	-	0.50	-	-	-	-	-	-
.............................................................................................................................................................CTAGTACTGATGAGA..............................................................................	15	5	0.20	0.20	-	-	-	-	-	-	-	-	-	0.20

TTGTAGATAATCTTATCTCAGAATTGGAATCCCCCAGAACTTAGCACAGTGCCTGGCTCATACTAGGTGCTCAATAAATATTTGTTAAATGAATAAACCCCAAAGTTCAGTTAATTACATGTTTGCTGAACTACTTTTTTTTTTTTAACCATCAAAGCTAGTACTGATGAGAACCTTATTTTCTTTTTCTTCATCTCCAGGATGACAAGGAAATTGACCTGGAGCACCTCCATAGACGTGTAAATAGCTT
.............................................................................................................................(((.((((((((................)))).))))...((((((((.............)))).))))..)))..................................................
...........................................................................................................................124.........................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)

SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)

................................................................................................................................AACTACTTTTTTTTTTTTAATTTG..................................................................................................

5.00

0.00

3.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTATG.....................................................................................................

4.00

0.00

2.00

1.00

..................................................................................................................................CTACTTTTTTTTTTTTACAG....................................................................................................

4.00

0.00

1.00

3.00

................................................................................................................................AACTACTTTTTTTTTTTTAAG.....................................................................................................

4.00

0.00

1.00

2.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTGTG......................................................................................................

3.00

0.00

1.00

2.00

.................................................................................................................................ACTACTTTTTTTTTTTTCTCG....................................................................................................

3.00

0.00

2.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTCTGG....................................................................................................

3.00

0.00

3.00

.................................................................................................................................ACTACTTTTTTTTTTTTATTTG...................................................................................................

2.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTCCCG....................................................................................................

2.00

0.00

2.00

.................................................................................................................................ACTACTTTTTTTTTTTTCCG.....................................................................................................

2.00

0.00

2.00

...................................................................................................................................TACTTTTTTTTTTTTAACCG...................................................................................................

2.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTCGG.....................................................................................................

2.00

0.00

1.00

..................................................................................................................................CTACTTTTTTTTTTTTACTTG...................................................................................................

2.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTCCGG....................................................................................................

2.00

0.00

1.00

................................................................................................................................AACTACTTTTTTTTTTTCCTG.....................................................................................................

1.00

0.00

1.00

......................................................................................................................................................................................................AGGATGACAAGGAAAAGAA.................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTATTAG...................................................................................................

1.00

0.00

1.00

..................................................................................................................................CTACTTTTTTTTTTTTACTTT...................................................................................................

1.00

0.00

1.00

..................................................................................................................................CTACTTTTTTTTTTTCCG......................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTCTGC....................................................................................................

1.00

0.00

1.00

................................................................................................................................AACTACTTTTTTTTTTTTATTG....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTCCCG.....................................................................................................

1.00

0.00

1.00

.....................................................................................................................................CTTTTTTTTTTTTAACCAATAG...............................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTATCG....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTGCG......................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTCGC......................................................................................................

1.00

0.00

1.00

............................................................................................................................................................................ACCTTATTTTCTTTTTAATG..........................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTAAATCC..................................................................................................

1.00

0.00

1.00

..................................................................................................................................CTACTTTTTTTTTTTTACCCT...................................................................................................

1.00

0.00

1.00

......................................................................................................................................TTTTTTTTTTTTAACCATCATG..............................................................................................

1.00

0.00

1.00

................................................................................................................................AACTACTTTTTTTTTTTTCTTG....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTATAG....................................................................................................

1.00

0.00

1.00

.....................................................................................................................................CTTTTTTTTTTTTAACCAAACG...............................................................................................

1.00

0.00

1.00

................................................................................................................................AACTACTTTTTTTTTTTTCCTG....................................................................................................

1.00

0.00

1.00

....................................................................................................................................ACTTTTTTTTTTTTAACGTG..................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTCTCG.....................................................................................................

1.00

0.00

1.00

....................................................................................................................................ACTTTTTTTTTTTTAACCTTGG................................................................................................

1.00

0.00

1.00

................................................................................................................................AACTACTTTTTTTTTTTTAAAAG...................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTCCCC.....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTCTAG....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTATAT....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTGTGT.....................................................................................................

1.00

0.00

1.00

....................................................................................................................................ACTTTTTTTTTTTTAACCGG..................................................................................................

1.00

0.00

1.00

..................................................................................................................................CTACTTTTTTTTTTTTAGTTG...................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTAATTTG..................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTCCGC.....................................................................................................

1.00

0.00

1.00

................................................................................................................................AACTACTTTTTTTTTAAAG.......................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTAAATCA..................................................................................................

1.00

0.00

1.00

............................................................................................................................................................................ACCTTATTTTCTTTTTTTG...........................................................

1.00

0.00

1.00

....................................................................................................................................ACTTTTTTTTTTTTAACCGT..................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTCAAG.....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTCCGC....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTATTG....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTAATGGA..................................................................................................

1.00

0.00

1.00

....................................................................................................................................ACTTTTTTTTTTTTAACCAAACG...............................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTCCCC....................................................................................................

1.00

0.00

1.00

..................................................................................................................................CTACTTTTTTTTTTTTACCAG...................................................................................................

1.00

0.00

1.00

................................................................................................................................AACTACTTTTTTTTTTAAAG......................................................................................................

1.00

0.00

1.00

..................................................................................................................................CTACTTTTTTTTTTTCATG.....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTCGAG....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTAGACG...................................................................................................

1.00

0.00

1.00

...............................................................................................................................................................................TTATTTTCTTTTTCTGTTC........................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTCTAG.....................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTAAACTA..................................................................................................

1.00

0.00

1.00

.................................................................................................................................ACTACTTTTTTTTTTTTAACC....................................................................................................

0.50

.............................................................................................................................................................CTAGTACTGATGAGA..............................................................................

0.20