ID: uc011cdi.1_intron_10_0_chr4_89329770_f.5p
GENE: (11)
chr4:89329720-89329969+


(4)
BREAST 		(12)
CELL-LINE 		(2)
HELA 		(1)
OTHER 		(13)
SKIN

Sense strand
CAAGAGATACCTTCAAGAAGTTAACAAAAAAGGAATGGATTTCTTCCATGGTAATAGCCAATACTTACTTTAGATATAGAACAAATACGATTGCAGTTTATTTTTGTTGGAAGCTGGGTGAGATGGGAACTATGATTGTAATTGCCCGATGAGTTCTTCCTGCCCACTGCAGAAACAAAAATCGACCCACTGAGACTATGACATTGTAGTAAAGAAAGAGTTTAATTGACATGAGGCTGGCCATGCCATG
..................................................................................................................(((((((..((.((.......)).)).)))))))......................................................................................................
..............................................................................................95....................................................149...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..............................................................................................................................GAACTATGATTGTAATTGCCCGATGAGTT...............................................................................................29121.0021.00---8.004.00-1.00-1.00-1.001.00-1.001.00------1.001.00----1.00-----
..............................................................................................................................GAACTATGATTGTAATTGCCCGATGAGT................................................................................................28120.0020.005.003.003.00-1.001.001.00--1.00-1.00-1.00-1.00-1.00-----------1.00---
..............................................................................................................................GAACTATGATTGTAATTGCCCGATGAGTTC..............................................................................................30112.0012.00-2.004.00--2.001.00---1.00-1.00-1.00------------------
..............................................................................................................................GAACTATGATTGTAATTGCCCGATGAGTTCT.............................................................................................3117.007.002.00------2.00---------------1.00----1.00--1.00-
..............................................................................................................................GAACTATGATTGTAATTGCCCGATGAG.................................................................................................2713.003.00--1.00-----2.00------------------------
..............................................................................................................................GAACTATGATTGTAATTGC.........................................................................................................1913.003.002.00--------1.00-----------------------
...............................................................................................................................AACTATGATTGTAATTGCCCGATGAGT................................................................................................2712.002.00-2.00-------------------------------
...............................................................................................................................AACTATGATTGTAATTGCCCGATGAGTTCT.............................................................................................3012.002.00-------1.00-----------1.00-------------
..............................................................................................................................GAACTATGATTGTAATTGCCCGATGA..................................................................................................2612.002.00--1.00-1.00----------------------------
...............................................................................................................................AACTATGATTGTAATTGCCCGATGAGTT...............................................................................................2812.002.00-1.001.00------------------------------
..................................................................................................................................TATGATTGTAATTGCCCGATGAGTTC..............................................................................................2611.001.001.00--------------------------------
...................................TGGATTTCTTCCATGATAC....................................................................................................................................................................................................191.000.00------------------------------1.00--
.......................ACAAAAAAGGAATGGACAAG...............................................................................................................................................................................................................201.000.00----------------1.00----------------
...................................................................................................................................ATGATTGTAATTGCCCGATGAGTTCT.............................................................................................2611.001.001.00--------------------------------
...............................................................................................................................AACTATGATTGTAATTGCCCGATGAG.................................................................................................2611.001.00-1.00-------------------------------
...............................................................................................................................AACTATGATTGTAATTGCCCGATGAGTTC..............................................................................................2911.001.00-1.00-------------------------------
...................................................................................................ATTTTTGTTGGAAGCTGGACGC.................................................................................................................................221.000.00------------------------1.00--------
...................................................................................................ATTTTTGTTGGAAGCTGGATG..................................................................................................................................211.000.00-------------------------1.00-------
............................................................ATACTTACTTTAGATATAGAACAAATACGA................................................................................................................................................................3011.001.001.00--------------------------------
................GAAGTTAACAAAAAAGGAAT......................................................................................................................................................................................................................2011.001.00------------1.00--------------------
................................................................................................................................ACTATGATTGTAATTGGT........................................................................................................181.000.00------------------1.00--------------
.............................................................................................................................................TTGCCCGATGAGTTCT.............................................................................................1620.500.500.50--------------------------------

Antisense strand
CAAGAGATACCTTCAAGAAGTTAACAAAAAAGGAATGGATTTCTTCCATGGTAATAGCCAATACTTACTTTAGATATAGAACAAATACGATTGCAGTTTATTTTTGTTGGAAGCTGGGTGAGATGGGAACTATGATTGTAATTGCCCGATGAGTTCTTCCTGCCCACTGCAGAAACAAAAATCGACCCACTGAGACTATGACATTGTAGTAAAGAAAGAGTTTAATTGACATGAGGCTGGCCATGCCATG
..................................................................................................................(((((((..((.((.......)).)).)))))))......................................................................................................
..............................................................................................95....................................................149...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................................................................GAGTTCTTCCTGCCCACTGCAGG............................................................................. 231.000.00--------------------------1.00------
......................................................................................................................................................GAGTTCTTCCTGCCCACTGCACTG............................................................................ 241.000.00--------------------1.00------------
.....................TAACAAAAAAGGAATGTT................................................................................................................................................................................................................... 181.000.00--------------------------------1.00
.......................................................................................................................................................AGTTCTTCCTGCCCACTAA................................................................................ 191.000.00----1.00----------------------------