ID: uc011ccp.1_intron_5_0_chr4_84200268_r.5p
GENE: (1)
chr4:84205465-84205714-


(1)
AGO2.ip 		(5)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(20)
CELL-LINE 		(6)
CERVIX 		(3)
HEART 		(5)
HELA 		(1)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCGCCCCCTGCAGCCGTACTTGCGCCTCATGCGGTTGGACAAGCCCATTGGTGAGTGCGGGCGGGCGGGCAGCCCGGGAATTTGCAAGTAGCAGCCTCCGAGTCGGCTCCGCGGAGCTGTCCGCGGCGGCCGGCCGGGGCGTGATGGAAATGAGAACCTGAAAGCTTGGGCTTGGCTGCCGGGTGCCGTGCGCCCTGGGGCGAATCACCTCGGGACACTTTGAAATGAGAGCCTGAAAGCTTGAGCTTGG
........................................................................................................(((((((((((....))))))).))))..((.((((.....((.........)).....)))).))................................................................................
........................................................................................................105..............................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR040036(GSM532921)
G243N. (cervix)		GSM532881(GSM532881)
G696N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)		SRR029128(GSM416757)
H520. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR189786TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR040015(GSM532900)
G623T. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................................................................AATGAGAACCTGAAAGCT....................................................................................18113.0013.00--12.00---1.00---------------------------------------------------
.....................................................................................................................................................ATGAGAACCTGAAAGCTTGG.................................................................................2019.009.004.004.00-------------------------------------------------1.00------
.....................................................................................................................................................ATGAGAACCTGAAAGCTTGGG................................................................................2119.009.006.003.00--------------------------------------------------------
................................................................................................................................................TGGAAATGAGAACCTGAAAGCTTGGGC...............................................................................2718.008.00---8.00------------------------------------------------------
................................................................................................................................................TGGAAATGAGAACCTGAAAGC.....................................................................................2115.005.005.00---------------------------------------------------------
.......................................................................................................................................................GAGAACCTGAAAGCTTGGG................................................................................1915.005.005.00---------------------------------------------------------
......................................................................................................................................CGGGGCGTGATGGAAATGAGAACCT...........................................................................................2514.004.00----4.00-----------------------------------------------------
.......................................................................................................................................................GAGAACCTGAAAGCTTGGGCTTGG...........................................................................2414.004.00-4.00--------------------------------------------------------
...................................................................................................................................................AAATGAGAACCTGAAAGCT....................................................................................1914.004.00-2.001.00--1.00----------------------------------------------------
.............................................................................................................CGCGGAGCTGTCCGCGGC...........................................................................................................................1814.004.00--4.00-------------------------------------------------------
..................................................................................................................................................GAAATGAGAACCTGAAAGCT....................................................................................2013.003.00-3.00--------------------------------------------------------
.....................GCGCCTCATGCGGTTGGACAAGC..............................................................................................................................................................................................................2313.003.00---------3.00------------------------------------------------
..................................................................................................................................................GAAATGAGAACCTGAAAGCTTGG.................................................................................2312.002.002.00---------------------------------------------------------
........................................................................................................................CCGCGGCGGCCGGCCGGGTTT.............................................................................................................212.000.00------------2.00---------------------------------------------
........................................................................................................................CCGCGGCGGCCGGCCGGGGT..............................................................................................................202.000.00--------2.00-------------------------------------------------
.....................................................................................................................................................................TTGGGCTTGGCTGCCGGG...................................................................1812.002.00--2.00-------------------------------------------------------
...........................................................................................................................................................ACCTGAAAGCTTGGGCTTGG...........................................................................2012.002.002.00---------------------------------------------------------
.......................................................................................................CGGCTCCGCGGAGCTGTCCGCGGCGGCCGGCCGGGGCGTGATGGAAATGAGAACCTG..........................................................................................5712.002.00----------2.00-----------------------------------------------
...............................................................................................................................................ATGGAAATGAGAACCTGAAAGCTTGG.................................................................................2612.002.00-2.00--------------------------------------------------------
..............................................................................................................................................GATGGAAATGAGAACCTGAAAGC.....................................................................................2312.002.00-2.00--------------------------------------------------------
........................................................GCGGGCGGGCGGGCA...................................................................................................................................................................................1502.002.00-----1.001.00---------------------------------------------------
........................................................GCGGGCGGGCGGGCAGCCGC..............................................................................................................................................................................202.000.00-------------------------1.00--1.00-----------------------------
.........................CTCATGCGGTTGGACAAG...............................................................................................................................................................................................................1812.002.00-------------2.00--------------------------------------------
.......................GCCTCATGCGGTTGGACAA................................................................................................................................................................................................................1912.002.00-------1.00-----------------------------------1.00--------------
..................................................................................................................................................GAAATGAGAACCTGAAAGCTT...................................................................................2111.001.001.00---------------------------------------------------------
........................................................................................................................................................AGAACCTGAAAGCTTGGGCTTGG...........................................................................2311.001.001.00---------------------------------------------------------
.........................CTCATGCGGTTGGACA.................................................................................................................................................................................................................1611.001.00--------------------1.00-------------------------------------
.....................................................................................................................................................................TTGGGCTTGGCTGCCGGGTG.................................................................2011.001.001.00---------------------------------------------------------
............................................................................GGAATTTGCAAGTAGCAGC...........................................................................................................................................................1911.001.00-----------------------1.00----------------------------------
................................................................................................................GGAGCTGTCCGCGGCGGCC.......................................................................................................................1911.001.00------------------------------1.00---------------------------
.......................................................................................................................................................GAGAACCTGAAAGCTTGGGCT..............................................................................2111.001.00-1.00--------------------------------------------------------
...........................................................................................................................CGGCGGCCGGCCGGGGCG.............................................................................................................1811.001.00----------------------1.00-----------------------------------
..................................................................................................CGAGTCGGCTCCGCGGAGCTGTC.................................................................................................................................2311.001.001.00---------------------------------------------------------
............GCCGTACTTGCGCCTCATG...........................................................................................................................................................................................................................1911.001.00---------------------1.00------------------------------------
.....................................................................................................................TGTCCGCGGCGGCCGGCCGGGTT..............................................................................................................2311.001.00------------------1.00---------------------------------------
...............................................................................................................................................ATGGAAATGAGAACCTGAAAGCT....................................................................................2311.001.001.00---------------------------------------------------------
..............................................................................AATTTGCAAGTAGCAGC...........................................................................................................................................................1711.001.00--------------------------------1.00-------------------------
...............................CGGTTGGACAAGCCCATTGGTGAGT..................................................................................................................................................................................................2511.001.00-----------------------------------------1.00----------------
........................................................GCGGGCGGGCGGGCAG..................................................................................................................................................................................1601.001.00-----1.00----------------------------------------------------
.......................................................................................................................................................GAGAACCTGAAAGCTTGGGC...............................................................................2011.001.001.00---------------------------------------------------------
.............................................................................................................................................TGATGGAAATGAGAACCTGAAAGCTT...................................................................................2611.001.00---1.00------------------------------------------------------
.......................................................................................................................................................GAGAACCTGAAAGCTTGG.................................................................................1811.001.001.00---------------------------------------------------------
..................................TTGGACAAGCCCATTGGTGA....................................................................................................................................................................................................2011.001.001.00---------------------------------------------------------
......................................................................................................................................CGGGGCGTGATGGAAATG..................................................................................................1811.001.00-------1.00--------------------------------------------------
.....................................................................................................GTCGGCTCCGCGGAGCTGTCCGCGG............................................................................................................................2511.001.00--------------1.00-------------------------------------------
........................................................GCGGGCGGGCGGGCATTA................................................................................................................................................................................1801.002.00-------1.00--------------------------------------------------
..................................................................................................CGAGTCGGCTCCGCGGAGCTGTCCGCGGCGGCCGGCCGGGGCGTGATGGAAATGAGAACCTGAAATTTT...................................................................................691.000.00---------------1.00------------------------------------------
.........................................................................................................................................................GAACCTGAAAGCTTGGGCTTGG...........................................................................2211.001.001.00---------------------------------------------------------
..............................................................GGGCGGGCAGCCCGGGAATTTGCAAGTAGC..............................................................................................................................................................3011.001.00-----1.00----------------------------------------------------
.........................................................................................................................................GGCGTGATGGAAATGAGAACCTGA.........................................................................................2411.001.00--------------1.00-------------------------------------------
........................................................GCGGGCGGGCGGGCAGCCGCGG............................................................................................................................................................................221.000.00-------------------------------------------------------1.00--
.......................GCCTCATGCGGTTGGACAAGC..............................................................................................................................................................................................................2111.001.00--------------------------1.00-------------------------------
.....................................................................................................................................................................................................GGGCGAATCACCTCGGGACACTTCG............................251.000.00---------------------------------------1.00------------------
......................................................GTGCGGGCGGGCGGGGCC..................................................................................................................................................................................181.000.00------------------------------------------1.00---------------
........................................................................CCCGGGAATTTGCAAGTAG...............................................................................................................................................................1911.001.00---------------1.00------------------------------------------
.........................................................CGGGCGGGCGGGCAGCCGC..............................................................................................................................................................................191.000.00--------------------------------------1.00-------------------
.........................................................CGGGCGGGCGGGCAG..................................................................................................................................................................................1501.001.00------1.00---------------------------------------------------
.................ACTTGCGCCTCATGCGGTTGGACAAGC..............................................................................................................................................................................................................2711.001.00-----------------------------1.00----------------------------
.................................................................................................................................................GGAAATGAGAACCTGAAAGCT....................................................................................2111.001.00--------------------------------------------------1.00-------
..............................................................................................................................................GATGGAAATGAGAACCTGAA........................................................................................2011.001.00-1.00--------------------------------------------------------
..................................................................................................................................................GAAATGAGAACCTGAAAG......................................................................................1811.001.00--1.00-------------------------------------------------------
..........................................................................................................................GCGGCGGCCGGCCGGGGGGGG...........................................................................................................211.000.00----------------1.00-----------------------------------------
...........................................................................................................TCCGCGGAGCTGTCCGCGGCGGCCGGCCGGGGCGTGATGGAAATGAGAACCTGAAAGCTTGGGC...............................................................................6411.001.00--------------------------------------------1.00-------------
.............................................................................................................................................TGATGGAAATGAGAACCTGAAAGCTTGGGC...............................................................................3011.001.00---1.00------------------------------------------------------
........................................................GCGGGCGGGCGGGCATA.................................................................................................................................................................................1701.002.00-------------------------------1.00--------------------------
.................................................................................................CCGAGTCGGCTCCGC..........................................................................................................................................1511.001.00-----------1.00----------------------------------------------
....................................................................................................................CTGTCCGCGGCGGCCGGCCGG.................................................................................................................2111.001.00------------------------------------------------1.00---------
........................................................................................................................................................AGAACCTGAAAGCTTGGGC...............................................................................1911.001.00-1.00--------------------------------------------------------
.....................GCGCCTCATGCGGTTGGCC..................................................................................................................................................................................................................191.000.00----------------------------------------------1.00-----------
.......................................................................................................................................GGGGCGTGATGGAAATGAGAAAA............................................................................................231.000.00-------------------1.00--------------------------------------
...............................................................................................................................................ATGGAAATGAGAACCTG..........................................................................................1711.001.00-----------------1.00----------------------------------------
............................................................................................................................................................................................................TCACCTCGGGACACTTTGAAATGAGAGC..................2811.001.00---1.00------------------------------------------------------
..........................................................GGGCGGGCGGGCAGC.................................................................................................................................................................................1501.001.00------1.00---------------------------------------------------
.....................................................................................................................TGTCCGCGGCGGCCGGCCGGG................................................................................................................2111.001.00---------------------------------1.00------------------------
.............................................................CGGGCGGGCAGCCCGGGAATTTGCAAGTAGCA.............................................................................................................................................................3211.001.00-----1.00----------------------------------------------------
..................................................................GGGCAGCCCGGGAATAGTG.....................................................................................................................................................................191.000.00--------1.00-------------------------------------------------
........................................................GCGGGCGGGCGGGCATTTT...............................................................................................................................................................................1901.002.00-------1.00--------------------------------------------------
........................................................GCGGGCGGGCGGGCAGAAAA..............................................................................................................................................................................2001.001.00------------------------------------------------------1.00---
.............................................................................................................CGCGGAGCTGTCCGCGGCGGCCGGCCGGGGCGTGATGGAAATGAGAACCTGAAAGCTTGG.................................................................................6011.001.00----------1.00-----------------------------------------------
...........................................................................GGGAATTTGCAAGTAGCAGCC..........................................................................................................................................................2111.001.00-------------------------------------1.00--------------------
...........................................................................................................................CGGCGGCCGGCCGGGTGT.............................................................................................................181.000.00------------------------1.00---------------------------------
.....................................................................................................GTCGGCTCCGCGGAGGCGT..................................................................................................................................191.000.00------------------------------------1.00---------------------
.........................................................CGGGCGGGCGGGCAGCCG...............................................................................................................................................................................181.000.00----------------------------------1.00-----------------------
.......................GCCTCATGCGGTTGGAC..................................................................................................................................................................................................................1720.500.50--------------------------------------------------------0.50-
.........................................................CGGGCGGGCGGGCAGCCCGGG............................................................................................................................................................................2120.500.500.50---------------------------------------------------------
........................................................................................................................CCGCGGCGGCCGGCCGG.................................................................................................................1720.500.50----------------0.50-----------------------------------------
........................................................................................................................CCGCGGCGGCCGGCCG..................................................................................................................1620.500.50-----------0.50----------------------------------------------
.........................................................................................................................CGCGGCGGCCGGCCGG.................................................................................................................1630.330.33-----------0.33----------------------------------------------
.........................................................................................................................CGCGGCGGCCGGCCGGC................................................................................................................1730.330.33-----------0.33----------------------------------------------
........................................................................................................GGCTCCGCGGAGCTG...................................................................................................................................1540.250.25---------------------------------------------------------0.25
..........................................................................................................................GCGGCGGCCGGCCGG.................................................................................................................1590.220.22-----------0.22----------------------------------------------

Antisense strand
CCGCCCCCTGCAGCCGTACTTGCGCCTCATGCGGTTGGACAAGCCCATTGGTGAGTGCGGGCGGGCGGGCAGCCCGGGAATTTGCAAGTAGCAGCCTCCGAGTCGGCTCCGCGGAGCTGTCCGCGGCGGCCGGCCGGGGCGTGATGGAAATGAGAACCTGAAAGCTTGGGCTTGGCTGCCGGGTGCCGTGCGCCCTGGGGCGAATCACCTCGGGACACTTTGAAATGAGAGCCTGAAAGCTTGAGCTTGG
........................................................................................................(((((((((((....))))))).))))..((.((((.....((.........)).....)))).))................................................................................
........................................................................................................105..............................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR040036(GSM532921)
G243N. (cervix)		GSM532881(GSM532881)
G696N. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)		SRR029128(GSM416757)
H520. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR189786TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR040015(GSM532900)
G623T. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
................TACTTGCGCCTCATGAC......................................................................................................................................................................................................................... 174.000.00----4.00-----------------------------------------------------
.......................................................................................................................................................................................................................................AAGCTCAAGCTTTCAGG.. 1711.001.00----------------------------------------1.00-----------------
.....................................................................CAGCCCGGGAATTTGGGG................................................................................................................................................................... 181.000.00-----------------------------------------------------1.00----
................................................................GCGGGCAGCCCGGGAGCGC....................................................................................................................................................................... 191.000.00-------------------------------------------------1.00--------
............................................................................................................................GGCGGCCGGCCGGGGCCA............................................................................................................ 181.000.00---------------------------1.00------------------------------
........................................................................................................................CCGCGGCGGCCGGCCGCTC............................................................................................................... 1921.000.00-----------------------------------------------1.00----------
...CCCCCTGCAGCCGTAAGC..................................................................................................................................................................................................................................... 181.000.00----------------------------------------------------1.00-----
...........................................................................................................................CGGCGGCCGGCCGGGGGT............................................................................................................. 181.000.00---------------------------------------------1.00------------
...........................................................................................................................CGGCGGCCGGCCGGGAGGG............................................................................................................ 191.000.00-----------------------------------1.00----------------------