uc011ccf.1_intron_6_0_chr4_82058637

TACTCAGAGAAGAGGATCCTAGAGGAGCTGTGCTCTCCATTCATTGTGAAGTAAGTGACCACTTGGCTTCCAAGGAGTTAGGATTTTCAGGCTCTTTATTTATGTATTTACTTAAATTATTTTTATTTTTATTTTTAATTTTTGTGGGTACATAGTAGGCATATATATTTATGGGGTACATGAAATGTTTTGATACAGGCATGCAATGCATAATTACAGCATGGAAAATGGGGTATCCATCCCCTTGAGC ..........................................................................................................(((((..((((((....((....))....))))))..)))))...................................................................................................... ..........................................................................................................107......................................................164....................................................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189782	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	SRR330864(SRX091702) tissue: skin psoriatic involveddisease state:. (skin)	SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................................................................TTAAATTATTTTTATTTTTATTTTTAAG...............................................................................................................	28	3	65.67	0.67	33.67	29.33	2.00	-	0.67	-	-	-	-	-	-
................................................................................................................TAAATTATTTTTATTTTTATTTTTAAG...............................................................................................................	27		52.00	0.00	26.00	26.00	-	-	-	-	-	-	-	-	-
.................................................................................................................AAATTATTTTTATTTTTATTTTTAAG...............................................................................................................	26		17.00	0.00	10.00	6.00	-	-	-	1.00	-	-	-	-	-
...............................................................................................................TTAAATTATTTTTATTTTTAAG.....................................................................................................................	22		7.00	0.00	5.00	1.00	1.00	-	-	-	-	-	-	-	-
...............................................................................................................TTAAATTATTTTTATTTTTATTTTTAAT...............................................................................................................	28	1	6.00	6.00	2.00	4.00	-	-	-	-	-	-	-	-	-
.................................................................................................................AAATTATTTTTATTTTTATTTTTATTTG.............................................................................................................	28		4.00	0.00	1.00	1.00	2.00	-	-	-	-	-	-	-	-
.............................................................................................................................TTTTTATTTTTAATTTTTCCG........................................................................................................	21		3.00	0.00	1.00	1.00	1.00	-	-	-	-	-	-	-	-
...............................................................................................................TTAAATTATTTTTATTTTTATTTTTTTG...............................................................................................................	28		2.00	0.00	-	1.00	1.00	-	-	-	-	-	-	-	-
...................................................................................................................ATTATTTTTATTTTTATTTTTAAG...............................................................................................................	24		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-
...............................................................................................................TTAAATTATTTTTATTTTTATTTTCAAG...............................................................................................................	28		2.00	0.00	-	-	1.00	-	1.00	-	-	-	-	-	-
................................................................................................................TAAATTATTTTTATTTTTATTTTTAAT...............................................................................................................	27	1	2.00	2.00	2.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................TTGTGGGTACATAGTGAGG..........................................................................................	19		2.00	0.00	-	-	-	-	-	-	-	2.00	-	-	-
...............................................................................................................TTAAATTATTTTTATTTTTATTTTTATG...............................................................................................................	28		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................TTTTTATTTTTAATTTTTCCCG.......................................................................................................	22		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-
...................................................................................................................................................GTACATAGTAGGCATGCAC....................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-
..............................................................................................................CTTAAATTATTTTTATTTTTATTTTTAAG...............................................................................................................	29		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................................TTAAATTATTTTTATTTTTATTTTAAAG...............................................................................................................	28		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-
..................................................................................................................AATTATTTTTATTTTTATTTTTATTTG.............................................................................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................................TTAAATTATTTTTATTTTTATTTTTAGG...............................................................................................................	28		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-
.............................................................................................................................TTTTTATTTTTAATTTTTGTGGGTACACGGT..............................................................................................	31		1.00	0.00	-	-	-	-	-	-	-	-	-	-	1.00
......................................................................................................................ATTTTTATTTTTATTTTTAATTTTTTTCA.......................................................................................................	29		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-
...................................................................................................................ATTATTTTTATTTTTATTTTCTAG...............................................................................................................	24		1.00	0.00	-	-	-	-	-	1.00	-	-	-	-	-
..............................................................................................................................TTTTATTTTTAATTTTTGCGCG......................................................................................................	22		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-
................................................................................................................TAAATTATTTTTATTTTTAAG.....................................................................................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................TTTTTATTTTTATTTTTAATTTTTCCT........................................................................................................	27		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-
...............................................................................................................TTAAATTATTTTTATTTTTTTG.....................................................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-
...........................................................................................................................TATTTTTATTTTTAATTTTTATTG.......................................................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-
......................................................................................................................ATTTTTATTTTTATTTTTAATTTTCATG........................................................................................................	28		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-
................................................................................................................TAAATTATTTTTATTTTTATTTTTCAG...............................................................................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................................TTAAATTATTTTTATTTTTATTTTGAAG...............................................................................................................	28		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................TTTTTATTTTTATTTTTAATTTGGGG.........................................................................................................	26		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-
.......................................................................AAGGAGTTAGGATTTTCAG................................................................................................................................................................	19	1	1.00	1.00	-	-	-	-	-	-	-	-	1.00	-	-
.................................................................................................................AAATTATTTTTATTTTTATTTG...................................................................................................................	22		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-
.............................................................................................................................................TTGTGGGTACATAGTAGGCGTC.......................................................................................	22		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-
...................................................................................................................ATTATTTTTATTTTTATTTTATTC...............................................................................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-
......................................................................................................................ATTTTTATTTTTATTTTTAATTTTTTTTG.......................................................................................................	29		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................CATATATATTTATGGACG.........................................................................	18		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-
...............................................................................................................TTAAATTATTTTTATTTTTATTTTTAA................................................................................................................	27	3	0.67	0.67	-	0.67	-	-	-	-	-	-	-	-	-
................................................................................................................TAAATTATTTTTATTTTTATTTTTA.................................................................................................................	25	6	0.17	0.17	-	0.17	-	-	-	-	-	-	-	-	-
.........................................................................................GGCTCTTTATTTATG..................................................................................................................................................	15	7	0.14	0.14	-	-	-	-	-	0.14	-	-	-	-	-

TACTCAGAGAAGAGGATCCTAGAGGAGCTGTGCTCTCCATTCATTGTGAAGTAAGTGACCACTTGGCTTCCAAGGAGTTAGGATTTTCAGGCTCTTTATTTATGTATTTACTTAAATTATTTTTATTTTTATTTTTAATTTTTGTGGGTACATAGTAGGCATATATATTTATGGGGTACATGAAATGTTTTGATACAGGCATGCAATGCATAATTACAGCATGGAAAATGGGGTATCCATCCCCTTGAGC
..........................................................................................................(((((..((((((....((....))....))))))..)))))......................................................................................................
..........................................................................................................107......................................................164....................................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189782

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)

SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

...............................................................................................................TTAAATTATTTTTATTTTTATTTTTAAG...............................................................................................................

65.67

0.67

33.67

29.33

2.00

0.67

................................................................................................................TAAATTATTTTTATTTTTATTTTTAAG...............................................................................................................

52.00

0.00

26.00

.................................................................................................................AAATTATTTTTATTTTTATTTTTAAG...............................................................................................................

17.00

0.00

10.00

6.00

1.00

...............................................................................................................TTAAATTATTTTTATTTTTAAG.....................................................................................................................

7.00

0.00

5.00

1.00

...............................................................................................................TTAAATTATTTTTATTTTTATTTTTAAT...............................................................................................................

6.00

2.00

4.00

.................................................................................................................AAATTATTTTTATTTTTATTTTTATTTG.............................................................................................................

4.00

0.00

1.00

2.00

.............................................................................................................................TTTTTATTTTTAATTTTTCCG........................................................................................................

3.00

0.00

1.00

...............................................................................................................TTAAATTATTTTTATTTTTATTTTTTTG...............................................................................................................

2.00

0.00

1.00

...................................................................................................................ATTATTTTTATTTTTATTTTTAAG...............................................................................................................

2.00

0.00

1.00

...............................................................................................................TTAAATTATTTTTATTTTTATTTTCAAG...............................................................................................................

2.00

0.00

1.00

................................................................................................................TAAATTATTTTTATTTTTATTTTTAAT...............................................................................................................

2.00

.............................................................................................................................................TTGTGGGTACATAGTGAGG..........................................................................................

2.00

0.00

2.00

...............................................................................................................TTAAATTATTTTTATTTTTATTTTTATG...............................................................................................................

2.00

0.00

2.00

.............................................................................................................................TTTTTATTTTTAATTTTTCCCG.......................................................................................................

1.00

0.00

1.00

...................................................................................................................................................GTACATAGTAGGCATGCAC....................................................................................

1.00

0.00

1.00

..............................................................................................................CTTAAATTATTTTTATTTTTATTTTTAAG...............................................................................................................

1.00

0.00

1.00

...............................................................................................................TTAAATTATTTTTATTTTTATTTTAAAG...............................................................................................................

1.00

0.00

1.00

..................................................................................................................AATTATTTTTATTTTTATTTTTATTTG.............................................................................................................

1.00

0.00

1.00

...............................................................................................................TTAAATTATTTTTATTTTTATTTTTAGG...............................................................................................................

1.00

0.00

1.00

.............................................................................................................................TTTTTATTTTTAATTTTTGTGGGTACACGGT..............................................................................................

1.00

0.00

1.00

......................................................................................................................ATTTTTATTTTTATTTTTAATTTTTTTCA.......................................................................................................

1.00

0.00

1.00

...................................................................................................................ATTATTTTTATTTTTATTTTCTAG...............................................................................................................

1.00

0.00

1.00

..............................................................................................................................TTTTATTTTTAATTTTTGCGCG......................................................................................................

1.00

0.00

1.00

................................................................................................................TAAATTATTTTTATTTTTAAG.....................................................................................................................

1.00

0.00

1.00

.......................................................................................................................TTTTTATTTTTATTTTTAATTTTTCCT........................................................................................................

1.00

0.00

1.00

...............................................................................................................TTAAATTATTTTTATTTTTTTG.....................................................................................................................

1.00

0.00

1.00

...........................................................................................................................TATTTTTATTTTTAATTTTTATTG.......................................................................................................

1.00

0.00

1.00

......................................................................................................................ATTTTTATTTTTATTTTTAATTTTCATG........................................................................................................

1.00

0.00

1.00

................................................................................................................TAAATTATTTTTATTTTTATTTTTCAG...............................................................................................................

1.00

0.00

1.00

...............................................................................................................TTAAATTATTTTTATTTTTATTTTGAAG...............................................................................................................

1.00

0.00

1.00

.......................................................................................................................TTTTTATTTTTATTTTTAATTTGGGG.........................................................................................................

1.00

0.00

1.00

.......................................................................AAGGAGTTAGGATTTTCAG................................................................................................................................................................

1.00

.................................................................................................................AAATTATTTTTATTTTTATTTG...................................................................................................................

1.00

0.00

1.00

.............................................................................................................................................TTGTGGGTACATAGTAGGCGTC.......................................................................................

1.00

0.00

1.00

...................................................................................................................ATTATTTTTATTTTTATTTTATTC...............................................................................................................

1.00

0.00

1.00

......................................................................................................................ATTTTTATTTTTATTTTTAATTTTTTTTG.......................................................................................................

1.00

0.00

1.00

...............................................................................................................................................................CATATATATTTATGGACG.........................................................................

1.00

0.00

1.00

...............................................................................................................TTAAATTATTTTTATTTTTATTTTTAA................................................................................................................

0.67

................................................................................................................TAAATTATTTTTATTTTTATTTTTA.................................................................................................................

0.17

.........................................................................................GGCTCTTTATTTATG..................................................................................................................................................

0.14