ID: uc011cbk.1_intron_5_0_chr4_75091112_f.3p
GENE: (6)
chr4:75146942-75147191+


(1)
AGO1.ip 		(3)
AGO2.ip 		(7)
BREAST 		(19)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCTCAGAAGTCCTGATGTGCTGCCTTAATCATCTTTGTTATTCTCTCGGATCAGAAATCATCAATGGCCTGTTTTTTAAGGAACAATGTATTACACATACGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTTAAAGCCTACCAAAACAGATATGTACACCTTTGTTATGCTGAAGGACAAACAACTCTTTTTGTTTTCAGGTATTCCAAAGTTGATTACGTCTGATATGGTTAAAGAAGGTGCTGCTGTA
.............................................................((.((.(((........)))..)).))...((((((((((..((....))..))))))))))...............................................................................................................................
...........................................................60...............................................................125...........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189787SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR189784SRR189782SRR029127(GSM416756)
A549. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.................................................................................................TACGTGTGTGTGTGTGTGTGTAGA.................................................................................................................................24029.002.001.0016.00---3.00-------2.001.00----1.001.00----1.00-------1.00--1.00-1.00-----
.................................................................................................TACGTGTGTGTGTGTGTGTGTACT.................................................................................................................................24013.002.009.00-3.00-------1.00---------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGTAAC.................................................................................................................................24013.002.002.00-1.006.00-----------2.00--2.00-------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGTAAAA................................................................................................................................2504.002.00-----1.00---1.00------1.00-----------------------1.00---
.................................................................................................TACGTGTGTGTGTGTGTGTTAT...................................................................................................................................223.000.00-------3.00------------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGT....................................................................................................................................2102.002.00------1.00-1.00-----------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGTA...................................................................................................................................2202.002.00--------1.00------------------------------1.00----
.................................................................................................TACGTGTGTGTGTGTGTGGGCA...................................................................................................................................222.000.001.00-1.00-----------------------------------------
.................................................................................................................................................................................................................................TATGGTTAAAGAAGGTGCT......1912.002.00----2.00---------------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGCAAA.................................................................................................................................2402.001.002.00-------------------------------------------
................................................................................................ATACGTGTGTGTGTGTGTGTGTAAAA................................................................................................................................262.000.00------------2.00-------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGCAGA.................................................................................................................................2402.001.002.00-------------------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGAT...................................................................................................................................2202.001.00-----------1.00----------1.00---------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGTACTT................................................................................................................................2502.002.002.00-------------------------------------------
......................CCTTAATCATCTTTGTAATG................................................................................................................................................................................................................201.000.00----------------------------------1.00---------
..................................................................................................ACGTGTGTGTGTGTGTGTGTGGAC................................................................................................................................241.000.00----------------------------1.00---------------
...................................................................................................CGTGTGTGTGTGTGTGTGTGTGTCCGT............................................................................................................................271.000.00--------------------------1.00-----------------
.................................................................................................TACGTGTGTGTGTGTGTGTGAAGA.................................................................................................................................2401.001.00-----------------------------1.00--------------
................................................................TGGCCTGTTTTTTAACAAC.......................................................................................................................................................................191.000.00-----------------1.00--------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGAAAA.................................................................................................................................2401.001.00------------------------------1.00-------------
.................................................................................................TACGTGTGTGTGTGTGTGGGC....................................................................................................................................211.000.00--1.00-----------------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGTAGC.................................................................................................................................2401.002.001.00-------------------------------------------
................................................................................................................................................................................................................................ATATGGTTAAAGAAGGAGAT......201.000.00--------------------------------1.00-----------
.................................................................................................TACGTGTGTGTGTGTGTGTTA....................................................................................................................................211.000.00---------1.00----------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGCAAT.................................................................................................................................2401.001.001.00-------------------------------------------
.................................................................................................TACGTGTGTGTGTGTGATTT.....................................................................................................................................201.000.00---------------------1.00----------------------
..................................................................................................................................................CAGATATGTACACCTTTGTTAT..................................................................................2211.001.00--------------1.00-----------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGTAGAA................................................................................................................................2501.002.00------------------------1.00-------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGTAT..................................................................................................................................2301.002.00--------1.00-----------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGAAC..................................................................................................................................2301.001.001.00-------------------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGTACGA................................................................................................................................2501.002.001.00-------------------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGTCAA.................................................................................................................................2401.002.00---------1.00----------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGTG...................................................................................................................................2201.001.00------1.00-------------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTG.....................................................................................................................................2001.001.00---------------------------1.00----------------
....AGAAGTCCTGATGTGCTGCCTTA...............................................................................................................................................................................................................................2311.001.00-----------------1.00--------------------------
..................................................................................................................................................................................................................GTTGATTACGTCTGATATGGTTAAA...............2511.001.00-----------------------1.00--------------------
................................................................................................................................................................................................................................ATATGGTTAAAGAAGGTGCT......2011.001.00----1.00---------------------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGTAACT................................................................................................................................2501.002.00----------1.00---------------------------------
.................................................................................................TACGTGTGTGTGTGTGAAT......................................................................................................................................191.000.00-------------------1.00------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTTTAG..................................................................................................................................231.000.00-----------------------------------1.00--------
.................................................................................................................................................................................CAAACAACTCTTTTTTAA.......................................................181.000.00-------------------------------------------1.00
..................................................................................................ACGTGTGTGTGTGTGTGTGTGTGTGTGGGG..........................................................................................................................301.000.00-------------------------------1.00------------
..................................................................................................................................................................................................................................ATGGTTAAAGAAGGTGCT......1811.001.00----1.00---------------------------------------
.................................................................................................TACGTGTGTGTGTGTGGGA......................................................................................................................................191.000.00-----------1.00--------------------------------
................................................................................................ATACGTGTGTGTGTGTGTGTGAT...................................................................................................................................231.000.00----------------1.00---------------------------
.................................................................................................TACGTGTGTGTGTGTGTGTGAAAC.................................................................................................................................2401.001.00--1.00-----------------------------------------

Antisense strand
CCTCAGAAGTCCTGATGTGCTGCCTTAATCATCTTTGTTATTCTCTCGGATCAGAAATCATCAATGGCCTGTTTTTTAAGGAACAATGTATTACACATACGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTTAAAGCCTACCAAAACAGATATGTACACCTTTGTTATGCTGAAGGACAAACAACTCTTTTTGTTTTCAGGTATTCCAAAGTTGATTACGTCTGATATGGTTAAAGAAGGTGCTGCTGTA
.............................................................((.((.(((........)))..)).))...((((((((((..((....))..))))))))))...............................................................................................................................
...........................................................60...............................................................125...........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189787SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR189784SRR189782SRR029127(GSM416756)
A549. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....................................................................................................GTGTGTGTGTGTGTGTGTGTGTGTGTATTCTTG..................................................................................................................... 331.000.00------------------------------------------1.00-
.......................................................................................................................................................................................ACTCTTTTTGTTTTCAATC................................................ 191.000.00-----------------------------------------1.00--
.....................................................................................................................TGTGTGTGTATTTTTACCA.................................................................................................................. 191.000.00-------------------------------------1.00------
.................................................................................................ACACACACACACACACACGTA.................................................................................................................................... 2101.001.00------1.00-------------------------------------