ID: uc011cbd.1_intron_11_0_chr4_74007561_r
GENE: ANKRD17(7)
chr4:74007511-74008008-


(1)
B-CELL
(3)
BREAST
(7)
CELL-LINE
(2)
HEART
(3)
HELA
(1)
LIVER
(1)
OTHER
(6)
SKIN

Sense strand
CTCCACCAGATGTCACTCAGTTAACTCCCCCATCCCACGATTTAAATAGGGTAAGATTTTAAAAATTAAAGCATTTTATGGTATGTCTTCTTTATCCTAATTCTTTCACTTACAGTTTCTGTTTAAATTAGGGTTTTTTTTTGTTCTAATATGTAGTTCTGTTTGTAAATATGTACTTGATACAGTTAATGAACATCTGGTACAATATTCAGATCCTAGATGATATGATTATGCTTTAGCTTTTAAAGGTCACAACTTGAATTCAAAGCCTACTAAAAAATGTCGTGGTAAACAATTTGGTGCCAACATATTTTAAGTAAATATGTCATTGTCTAAGATGACATATTAAAAATATTGTCAAAAAATCTCTAATTTATTCTTTATTTAGAGCATATTACTTAATGGATTGTGTAGGACACTAATAGTCACTTAGTGTCCTTTGTCTTAGGCTCCTCGTGTACCAGTTCAAGCACTGCCCATGGTTGTTCCACCTCAGGA
...........................................................................................................................................................................................................................................................................(((.((........))...))).......((((((((.(((((..((((((((((((((((((......)))))))))))...................((((((............)))))).....))))))).....))))).)).))))))............................................................................
....................................................................................................................................................................................................................................................................261...............................................................................................................................................................423.........................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............................................................................................................................................................................................................................................................................................................................................................................................TTATTTAGAGCATATTACTTAATGGATTGTGTAGGACACTAATAGTCACTTAGTGTCCTTTGTCTTAG..................................................68117.0017.0016.00--1.00---------------------
................................TCCCACGATTTAAATAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................18111.0011.00-6.00------2.002.00------1.00--------
.............................................................................................................................................................................................................................................................................................................................................................................................TATTTAGAGCATATTACTTAATGGATTGTGTAGGACACTAATAGTCACTTAGTGTCCTTTGTCTTAG..................................................6719.009.009.00------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................CTTTATTTAGAGCATATTACTTAATGGATTGTGTAGGACACTAATAGTCACTTAGTGTCCTTTGTCTTAG..................................................7017.007.007.00------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................TTTATTTAGAGCATATTACTTAATGGATTGTGTAGGACACTAATAGTCACTTAGTGTCCTTTGTCTTAG..................................................6915.005.005.00------------------------
.........................................................................................................................................................................................................................................................................AAGCCTACTAAAAAATGTCG.....................................................................................................................................................................................................................2012.002.00--2.00----------------------
............................................................................................................................................................................................................................................................................................................................................................................................TTATTTAGAGCATATTACTTAATGGATTGTGTAGGACACTAATAGTCACTTAGTGTCCTTTGTCTTAGA.................................................6912.0017.00---2.00---------------------
...CACCAGATGTCACTCAGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002.00------2.00------------------
.................................................................................................................................................................................................................................................................TGAATTCAAAGCCTACTAAAAA...........................................................................................................................................................................................................................2212.002.00-----2.00-------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................TACTTAATGGATTGTGTAGGACAC...............................................................................2411.001.00---------------------1.00---
...CACCAGATGTCACTCAGTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------------------1.00------
.............................................................................................................................................................................................................................................................................................................................................................................................................CTTAATGGATTGTGTAGGACA................................................................................2111.001.00--------------1.00----------
..........................................................................................................................................................................................................................GATGATATGATTATGCTTTAGCT.................................................................................................................................................................................................................................................................2311.001.00-------------1.00-----------
...........................................................................................................................................................................................................................................................ACAACTTGAATTCAATAG.....................................................................................................................................................................................................................................181.000.00---------------1.00---------
.........................................................................................................................TTTAAATTAGGGTTTGT........................................................................................................................................................................................................................................................................................................................................................................171.000.00----------1.00--------------
....................................................................................................................................GTTTTTTTTTGTTCTGTC............................................................................................................................................................................................................................................................................................................................................................181.000.00----------1.00--------------
.................................................................................................................................AGGGTTTTTTTTTGTACAC..............................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------1.00-------
......................................................................................................................................................................................................................................................................................................................................................................CAAAAAATCTCTAATTTATTCTTTATTTAG..............................................................................................................3011.001.00----1.00--------------------
...........................................................TAAAAATTAAAGCATTTTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-------------------1.00-----
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTGTACCAGTTCAAGC...........................1911.001.00--------------------1.00----
................................................................................................................................................................................................................................................................................................................................................................................CTAATTTATTCTTTATTTTCAG............................................................................................................221.000.00----1.00--------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCCCATGGTTGTTCCACCT.....2211.001.00--1.00----------------------
...............................................................................................................................................................................................................................................................................................................................AATATGTCATTGTCTAAA.................................................................................................................................................................181.000.00----------------------1.00--
.................................................................................................................................AGGGTTTTTTTTTGTTATCC.............................................................................................................................................................................................................................................................................................................................................................201.000.00-------1.00-----------------
.................................................................................................................................AGGGTTTTTTTTTGTTCTTTC............................................................................................................................................................................................................................................................................................................................................................211.000.00-------1.00-----------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTTAGGCTCCTCGTGTA......................................2311.001.00-----------1.00-------------
................................................................................................................................................................................................................................................................................................................................................................................................................AATGGATTGTGTAGGA..................................................................................1630.330.33-----------------------0.33-
................................................................................................................................................................................................................................................................................................................................................................................CTAATTTATTCTTTATT.................................................................................................................1790.220.22----0.11-------------------0.11

Antisense strand
CTCCACCAGATGTCACTCAGTTAACTCCCCCATCCCACGATTTAAATAGGGTAAGATTTTAAAAATTAAAGCATTTTATGGTATGTCTTCTTTATCCTAATTCTTTCACTTACAGTTTCTGTTTAAATTAGGGTTTTTTTTTGTTCTAATATGTAGTTCTGTTTGTAAATATGTACTTGATACAGTTAATGAACATCTGGTACAATATTCAGATCCTAGATGATATGATTATGCTTTAGCTTTTAAAGGTCACAACTTGAATTCAAAGCCTACTAAAAAATGTCGTGGTAAACAATTTGGTGCCAACATATTTTAAGTAAATATGTCATTGTCTAAGATGACATATTAAAAATATTGTCAAAAAATCTCTAATTTATTCTTTATTTAGAGCATATTACTTAATGGATTGTGTAGGACACTAATAGTCACTTAGTGTCCTTTGTCTTAGGCTCCTCGTGTACCAGTTCAAGCACTGCCCATGGTTGTTCCACCTCAGGA
...........................................................................................................................................................................................................................................................................(((.((........))...))).......((((((((.(((((..((((((((((((((((((......)))))))))))...................((((((............)))))).....))))))).....))))).)).))))))............................................................................
....................................................................................................................................................................................................................................................................261...............................................................................................................................................................423.........................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................ATGTCTTCTTTATCCTCCCT............................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00--1.00----------------------
......................................................GATTTTAAAAATTAAAGAATC....................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00------------1.00------------