ID: uc011byu.1_intron_0_0_chr4_41615116_f
GENE: (1)
chr4:41615066-41615532+


(1)
B-CELL
(1)
BREAST
(11)
CELL-LINE
(2)
CERVIX
(6)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(5)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CTCATTCCCAGGACAGACATGCAGTTATGGATTCCGAAAGACAAGTCAAGGTTAAGGTTTTGGTTTTTCGTTTTTGTTTTGAACTATCATTGTACTGTTGTGAATCCAAACTTTGTGATCCTTTCTTCTAATTCTTTCTCTACTCTTTTTTTTTTAAACCTAGGGAATATGAGTTATTTGGGGATTTTTTTAAAAAAAACGTTGTGCATGATTTTCTGATTGGGAAAGTTGCAGCAAAGGAGGCTCCAGGAACAGAGCAGTGACTTTTCAAAGATGATTGATCCTGTAACTGGTTTCCACAACCTTTCCATTCTGATGTGATATGCAGGGGTTTTTTTGGAGACCACTGGAGACCCATCTTCCTGATAGTGTAGGCTAGAATTATGTCTGTAACCCTTTCATTTTCTTTTTTGACAGGACACTGATGACATTGAAAGTCCTAAACGCAGTATCCGAGACAGTGGCTA
....................................................(((((.(((((...((((.....((..(((....)))....)).....)))).))))))))))................................................................................................................................................................................................................................................................................................................................................................
..................................................51...............................................................................................................164.............................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189782SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM532874(GSM532874)
G699T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR189785SRR029128(GSM416757)
H520. (cell line)
GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............................................................................................................................................TACTCTTTTTTTTTTAATAG...................................................................................................................................................................................................................................................................................................................207.000.00-6.00---1.00-----------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGAAAGTCCTAAACGCAGT.................2314.004.00---4.00-------------------------------
.....................................................................GTTTTTGTTTTGAACTCTG...........................................................................................................................................................................................................................................................................................................................................................................................194.000.00----------2.00----1.00-1.00-----------------
.........................................................................................................................................CTCTACTCTTTTTTTTTTTG......................................................................................................................................................................................................................................................................................................................203.000.00-2.00-----------1.00---------------------
............................................................TGGTTTTTCGTTTTTGTTTTTTTA...............................................................................................................................................................................................................................................................................................................................................................................................242.000.00--2.00--------------------------------
............................................................TGGTTTTTCGTTTTTGTTTTGCTTC..............................................................................................................................................................................................................................................................................................................................................................................................2522.000.501.00-1.00--------------------------------
............................................................TGGTTTTTCGTTTTTGTTTTCGTT...............................................................................................................................................................................................................................................................................................................................................................................................242.000.002.00----------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAACGCAGTATCCGAGACAGTGGC..2612.002.00------------2.00----------------------
.......................................................................................................................................................................................................................................................AGGAACAGAGCAGTGATA..........................................................................................................................................................................................................182.000.00---------2.00-------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGTCCTAAACGCAGTATCCGAGAC........2812.002.00----------------1.00---1.00--------------
..........................................................TTTGGTTTTTCGTTTTTGTTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................262.000.002.00----------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGAAAGTCCTAAACGCACT.................231.000.00---1.00-------------------------------
...........................................................................................................................................CTACTCTTTTTTTTTCTAG.....................................................................................................................................................................................................................................................................................................................191.000.00-----1.00-----------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACATTGAAAGTCCTAAACGCAGTATC..............3011.001.00-------1.00---------------------------
................................................................TTTTCGTTTTTGTTTCTAG................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------1.00----------------------------
.................................................................TTTCGTTTTTGTTTTGCTTC..............................................................................................................................................................................................................................................................................................................................................................................................201.000.001.00----------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTATCCGAGACAGTGGCTAAA231.000.00------------------------------1.00----
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGACATTGAAAGTCCTAAACGCAGTATC..............2811.001.00-------1.00---------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAAACGCAGTATCCGAGA.........2211.001.00-----------1.00-----------------------
..........................................................TTTGGTTTTTCGTTTTTGTTTTTTA................................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00----------------------------------
............................................................TGGTTTTTCGTTTTTGTTTTTTGC...............................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00----------------------------------
.........AGGACAGACATGCAGTTCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00----------------------1.00------------
...................................................................................................................................................................................................................................................CTCCAGGAACAGAGCATTA.............................................................................................................................................................................................................191.000.00---------------------1.00-------------
...............................................................TTTTTCGTTTTTGTTTTCTTC...............................................................................................................................................................................................................................................................................................................................................................................................211.000.001.00----------------------------------
..........................................................TTTGGTTTTTCGTTTTGGTC.....................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--1.00--------------------------------
.........................................................................................................................................CTCTACTCTTTTTTTTTTTGGG....................................................................................................................................................................................................................................................................................................................221.000.00-------------1.00---------------------
............................................................TGGTTTTTCGTTTTTGTTTTGTTGC..............................................................................................................................................................................................................................................................................................................................................................................................2521.000.50--1.00--------------------------------
..................................................................................................................................................................................................................................................GCTCCAGGAACAGAGGTG...............................................................................................................................................................................................................181.000.00---------------------------------1.00-
..........................................................................................................................................TCTACTCTTTTTTTTTGTTC.....................................................................................................................................................................................................................................................................................................................201.000.00-------------------1.00---------------
.......................................................................................................................................TTCTCTACTCTTTTTGTTG.........................................................................................................................................................................................................................................................................................................................191.000.00----1.00------------------------------
.............................................................................................................................................................................TTATTTGGGGATTTTTTGT...................................................................................................................................................................................................................................................................................191.000.00------1.00----------------------------
..........................................................................................................................................................................................................................................CAAAGGAGGCTCCAGTCG.......................................................................................................................................................................................................................181.000.00----1.00------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTTTTTTGACAGGTGG..............................................211.000.00--1.00--------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGAAAGTCCTAAACGCAGT.................2211.001.00---1.00-------------------------------
.........................................................TTTTGGTTTTTCGTTTTTGTTTTTAGC...............................................................................................................................................................................................................................................................................................................................................................................................271.000.00--1.00--------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATGACATTGAAAGTCCTAAACGC....................2711.001.00-----------1.00-----------------------
..........................................................TTTGGTTTTTCGTTTTTGTTTCTTA................................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00----------------------------------
..............................................................GTTTTTCGTTTTTGTTTTTTGC...............................................................................................................................................................................................................................................................................................................................................................................................221.000.001.00----------------------------------
.........................................................................................................................................CTCTACTCTTTTTTTTTCTCT.....................................................................................................................................................................................................................................................................................................................211.000.00----------------------------------1.00
........................TTATGGATTCCGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00------------------1.00----------------
...........................................................................................................................................CTACTCTTTTTTTTTTATTG....................................................................................................................................................................................................................................................................................................................201.000.00-1.00---------------------------------
.................................................................TTTCGTTTTTGTTTTACC................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--1.00--------------------------------
...........................................................TTGGTTTTTCGTTTTTGTTTTTGCC...............................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGACACTGATGACATTGA.................................1911.001.00-------------------------------1.00---
......................................................................................................................................................................................................................................................................................................TTCCACAACCTTTCCATCAG.........................................................................................................................................................201.000.00-----------------------1.00-----------
...........................................................................................................................................CTACTCTTTTTTTTTTCG......................................................................................................................................................................................................................................................................................................................181.000.00-----1.00-----------------------------
...........................................................TTGGTTTTTCGTTTTTGTTTTTTA................................................................................................................................................................................................................................................................................................................................................................................................241.000.00--1.00--------------------------------
...ATTCCCAGGACAGACATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00--------------1.00--------------------
.................................CCGAAAGACAAGTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00--------------------------------1.00--
...................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGATGACATTGAAAG..............................1821.001.00---------------------------1.00-------
................................................................................................................................................................................TTTGGGGATTTTTTTAGAAT...............................................................................................................................................................................................................................................................................201.000.00------------------------1.00----------
..........................................................................................................................................TCTACTCTTTTTTTTTCG.......................................................................................................................................................................................................................................................................................................................181.000.00-----1.00-----------------------------
...........................................................TTGGTTTTTCGTTTTTGAC.....................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00----------------------------------
......................................................................................................................................................................................................................................................................................................................................AGGGGTTTTTTTGGAGGTTT.........................................................................................................................201.000.00------1.00----------------------------
...........................................................................................................................................CTACTCTTTTTTTTTCAAG.....................................................................................................................................................................................................................................................................................................................191.000.00-1.00---------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTAAACGCAGTATCCGAGA.........2111.001.00-------------------------1.00---------
............................................................TGGTTTTTCGTTTTTGTTTTG..................................................................................................................................................................................................................................................................................................................................................................................................2120.500.50--0.50--------------------------------
............................................................TGGTTTTTCGTTTTTGTTT....................................................................................................................................................................................................................................................................................................................................................................................................1940.250.25--0.25--------------------------------

Antisense strand
CTCATTCCCAGGACAGACATGCAGTTATGGATTCCGAAAGACAAGTCAAGGTTAAGGTTTTGGTTTTTCGTTTTTGTTTTGAACTATCATTGTACTGTTGTGAATCCAAACTTTGTGATCCTTTCTTCTAATTCTTTCTCTACTCTTTTTTTTTTAAACCTAGGGAATATGAGTTATTTGGGGATTTTTTTAAAAAAAACGTTGTGCATGATTTTCTGATTGGGAAAGTTGCAGCAAAGGAGGCTCCAGGAACAGAGCAGTGACTTTTCAAAGATGATTGATCCTGTAACTGGTTTCCACAACCTTTCCATTCTGATGTGATATGCAGGGGTTTTTTTGGAGACCACTGGAGACCCATCTTCCTGATAGTGTAGGCTAGAATTATGTCTGTAACCCTTTCATTTTCTTTTTTGACAGGACACTGATGACATTGAAAGTCCTAAACGCAGTATCCGAGACAGTGGCTA
....................................................(((((.(((((...((((.....((..(((....)))....)).....)))).))))))))))................................................................................................................................................................................................................................................................................................................................................................
..................................................51...............................................................................................................164.............................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189782SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM532874(GSM532874)
G699T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR189785SRR029128(GSM416757)
H520. (cell line)
GSM359199(GSM359199)
hepg2_cip_tap_pasr_b. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACTGTCTCGGATACTGCG.. 2112.002.00--------2.00--------------------------
............................................................TGGTTTTTCGTTTTTCCA..................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------------------------1.00--------
.........................................................TTTTGGTTTTTCGTTTTTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................... 221.000.00----------------------------1.00------
.............................................................GGTTTTTCGTTTTTGCCGG................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----------------------------1.00-----
..................................................................................ACTATCATTGTACTGGGCA.............................................................................................................................................................................................................................................................................................................................................................................. 191.000.00----1.00------------------------------
.............................................................................................................................................................................................................GCATGATTTTCTGATTTTTG.................................................................................................................................................................................................................................................. 201.000.00----1.00------------------------------