ID: uc011bva.1_intron_6_0_chr4_731311_f.3p
GENE: PCGF3(7)
chr4:737062-737311+


(1)
AGO2.ip 		(6)
BRAIN 		(16)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(1)
KIDNEY 		(1)
LIVER 		(2)
OTHER 		(27)
SKIN 		(1)
TESTES

Sense strand
GTGGGGCGGGTGCCCGGGGGGTGCGCTTCCCGCTGTGCTGAGCCCCCAAAACATCTCAGTCTTAATTTGCTGCTTTCTTATTAGTAGCCTTCAAACTTCATAATGCAAATCCCTAATTTTCTTTATGTGATGTTTATGAACAGAAGTTTAATAGAATCCACTGCCTGTGAGATGAAAGACTGTGTGTTGATTTTCCGCAGCGGAAATGAGAAAGCAGAGGGAGTTCTATCACAAATTGGGCATGGAGGTG
.......................................................................................................................................((.((((..(((((......((((((.....))).)))...)))))...)))).))...........................................................
......................................................................................................103.....................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormTAX577580(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577744(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577740(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.......................................................................................................................................................................TGAGATGAAAGACTGTAGCT...............................................................2028.000.00-2.002.00-1.001.00-5.00-----1.00-1.00-1.00------2.00-1.002.00----1.00-1.00--------------1.00----1.00-1.001.00--1.001.00--1.00------
.......................................................................................................................................................................TGAGATGAAAGACTGTAGC................................................................197.000.00-----1.001.00--2.00-------1.00-1.00-------------------------------------------1.00-------
.......................................................................................................................................................................TGAGATGAAAGACTGTAGAT...............................................................207.000.002.00-------1.00-1.001.001.00--------------------------1.00-------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTAGAG...............................................................207.000.002.00---1.001.001.00---1.00-1.00----------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTATCT...............................................................206.000.00-2.00--1.00-1.00----------1.001.00----------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTAG.................................................................186.000.00--1.00-1.001.00------1.00---1.00-1.00----------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTAGCG...............................................................204.000.00--2.00-1.00-----------1.00------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTAGGT...............................................................204.000.00------1.00----1.00----------1.00------1.00-----------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTAGGG...............................................................203.000.00------1.00--1.00-1.00-----------------------------------------------------------
........................................................................................................................................................................................................CGGAAATGAGAAAGCAGAGGGAG...........................2313.003.00--------------------------1.00--------------------1.00----1.00------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTATA................................................................193.000.00--1.00-----1.00--------------------1.00-----------------------------------------
......................................................................................................................................................................................................AGCGGAAATGAGAAAGCAGAGGGA............................2413.003.00-------------------------------2.00--------------------------1.00------------
.......................................................................................................................................................................TGAGATGAAAGACTGTAGCA...............................................................202.000.00--------1.00-------1.00------------------------------------------------------
.......................................................................................................................................................................................................GCGGAAATGAGAAAGCAGAGGGAGT..........................2512.002.00---2.00-------------------------------------------------------------------
........................................................................................................................................................................GAGATGAAAGACTGTGTGTTGA............................................................2212.002.00------------------------------------------1.00-1.00--------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTATCG...............................................................202.000.00----------1.00--1.00---------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTATAT...............................................................202.000.001.00------------------1.00---------------------------------------------------
...........................................................................................................AATCCCTAATTTTCTTTAT............................................................................................................................1912.002.00------------------------------2.00----------------------------------------
.......................................................................................................................................................................................................GCGGAAATGAGAAAGCAGAGG..............................2112.002.00---------------------2.00-------------------------------------------------
........................................................................................................................................................................................................CGGAAATGAGAAAGC...................................1542.002.00---0.50----------------------------0.250.25--------------------------------0.250.250.250.25-
........................................................................................................................................................................................................CGGAAATGAGAAAGCAGA................................1812.002.00-------------------------1.00------------------------1.00--------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTA..................................................................172.000.001.00-----------------1.00----------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTAAA................................................................192.000.00-----1.00--------------------------------1.00--------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTAGAA...............................................................202.000.00--1.00------------1.00-------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTAA.................................................................182.000.00------------1.00------------1.00---------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTATAA...............................................................202.000.00----------1.00----1.00-------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTATAG...............................................................202.000.001.001.00---------------------------------------------------------------------
......................................................................................................................................................................................................AGCGGAAATGAGAAAGCAGAGGG.............................2311.001.00---1.00-------------------------------------------------------------------
......................................................................................................................................................................................................AGCGGAAATGAGAAAGCAGAGGGAGTTC........................2811.001.00---------------------------------------------1.00-------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTGGTTC..............................................................211.000.00--1.00--------------------------------------------------------------------
...................................................................................................................................................................CCTGTGAGATGAAAGACTGT...................................................................2011.001.00--------------1.00--------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTGAAA...............................................................201.000.00---------1.00-------------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTGGAGT..............................................................211.000.00-----------1.00-----------------------------------------------------------
............................................................................................................................................................................................................AATGAGAAAGCAGAGGGAG...........................1911.001.00-----------------------------------1.00-----------------------------------
......................................................................................................................TTCTTTATGTGATGTTTATGAACAGAAGTT......................................................................................................3011.001.00--------------------------------------------------------------1.00--------
.......................................................................................................................................................................TGAGATGAAAGACTGTAGA................................................................191.000.00-1.00---------------------------------------------------------------------
................................................................................................................................................................CTGCCTGTGAGATGAAAGACTGTGTG................................................................2611.001.00-----------------------------------------------------------1.00-----------
.....................................................................................................................................................................TGTGAGATGAAAGACTGTGTGTT..............................................................2311.001.00-------------------------------------------------------1.00---------------
.......................................................................................................................................................................................................GCGGAAATGAGAAAGCAGA................................1911.001.00-------------------1.00---------------------------------------------------
........................................................................................................................................................................................................CGGAAATGAGAAAGCAGAGGGAGTTCTATC....................3011.001.00---1.00-------------------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTAT.................................................................181.000.00--1.00--------------------------------------------------------------------
...........................................................................................................................................................ATCCACTGCCTGTGAGATGAAAGACTGTGTG................................................................3111.001.00-------------------------------------1.00---------------------------------
................GGGGGTGCGCTTCCCCTG........................................................................................................................................................................................................................181.000.00----------------------------------------1.00------------------------------
........................................................................................................................................TGAACAGAAGTTTAACACG...............................................................................................191.000.00------------------------------------1.00----------------------------------
...................................................................................................................................................................CCTGTGAGATGAAAGACTG....................................................................1911.001.00---------------------------------1.00-------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGATGC................................................................191.000.00----1.00------------------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTACCT...............................................................201.000.00-1.00---------------------------------------------------------------------
...................................................................................................................................................................CCTGTGAGATGAAAGACTGTGTGTTGAA...........................................................281.000.00--------------1.00--------------------------------------------------------
...........................................................................................................................................................ATCCACTGCCTGTGAGATGAAAGACTGT...................................................................2811.001.00------------------------------------------------1.00----------------------
..........................................................................................................................................................................................................GAAATGAGAAAGCAGAGGGA............................2011.001.00----------------------------1.00------------------------------------------
...................................................................................................................................................................................................CGCAGCGGAAATGAGAAAGCAGAGGGAGTTC........................3111.001.00--------------------1.00--------------------------------------------------
......................................................................................................................................................................................................AGCGGAAATGAGAAAGCAGAGGGAGTG.........................271.000.00-----------------------------------------1.00-----------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTATCA...............................................................201.000.001.00----------------------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTGGCT...............................................................201.000.00--------1.00--------------------------------------------------------------
......................................................................................................................................................................GTGAGATGAAAGACTGTGTGTTGA............................................................2411.001.00--------------------1.00--------------------------------------------------
................................................................................................................................................................CTGCCTGTGAGATGAAAGACTGT...................................................................2311.001.00--------------1.00--------------------------------------------------------
.......................................................................................................................................................................................................GCGGAAATGAGAAAGCAGAGGGAGTTCTAT.....................3011.001.00-----------------------1.00-----------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTGGCGT..............................................................211.000.001.00----------------------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTGGGGT..............................................................211.000.00----------------------1.00------------------------------------------------
........................................................................................................................................................................................................................................AAATTGGGCATGGAGGAT181.000.00-----------------------------------------------------------------1.00-----
..........................................................................................................................................................................................................GAAATGAGAAAGCAGAGGGAGTT.........................2311.001.00----------------------------1.00------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTATC................................................................191.000.00-1.00---------------------------------------------------------------------
.......................................................................................................................................................................TGAGATGAAAGACTGTCTCG...............................................................201.000.00-1.00---------------------------------------------------------------------
........................................................................................................................................................................................................CGGAAATGAGAAAGCAGAGGG.............................2111.001.00----------------------------------------------1.00------------------------

Antisense strand
GTGGGGCGGGTGCCCGGGGGGTGCGCTTCCCGCTGTGCTGAGCCCCCAAAACATCTCAGTCTTAATTTGCTGCTTTCTTATTAGTAGCCTTCAAACTTCATAATGCAAATCCCTAATTTTCTTTATGTGATGTTTATGAACAGAAGTTTAATAGAATCCACTGCCTGTGAGATGAAAGACTGTGTGTTGATTTTCCGCAGCGGAAATGAGAAAGCAGAGGGAGTTCTATCACAAATTGGGCATGGAGGTG
.......................................................................................................................................((.((((..(((((......((((((.....))).)))...)))))...)))).))...........................................................
......................................................................................................103.....................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormTAX577580(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577744(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577740(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
........................................................................................TAGGGATTTGCATTATGAAGTTTGAAG....................................................................................................................................... 2712.002.00---2.00-------------------------------------------------------------------
......................................................................................GGGATTTGCATTATGAAGTTTGAAGGC......................................................................................................................................... 2711.001.00---1.00-------------------------------------------------------------------
...................GGTGCGCTTCCCGCTTAC..................................................................................................................................................................................................................... 181.000.00-----------------------------------------------------1.00-----------------
...........................................................................................................AATCCCTAATTTTCTTGTT............................................................................................................................ 191.000.00-------------1.00---------------------------------------------------------
......................................................................................TGCATTATGAAGTTTGAAGGC............................................................................................................................................... 2111.001.00-----------------------1.00-----------------------------------------------
..GGGGCGGGTGCCCGGGGC...................................................................................................................................................................................................................................... 181.000.00---------------------------------------------------1.00-------------------
........................................................................................................................................................AGAATCCACTGCCTGTG................................................................................. 171.000.00-------------------------------------------1.00---------------------------
........CGCACCCCCCGGGCACC................................................................................................................................................................................................................................. 1720.500.50--------------------0.50--------------------------------------------------
.................................................................................................................................................................................AATCAACACACAGTC.......................................................... 1560.170.17----------------------------------------------------------------------0.17