ID: uc011bsq.1_intron_11_0_chr3_193031983_r.5p
GENE: (18)
chr3:193032561-193032810-


(1)
AGO2.ip 		(12)
BREAST 		(6)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(1)
HELA 		(1)
KIDNEY 		(1)
OTHER 		(5)
SKIN 		(1)
XRN.ip

Sense strand
GGTCTTGAAGGAACTGAGTGAGGCCCGTATCAGGACTGTGATGATTACAGGTATGTATTTGTTTCTAGGGGCCTGGCAAGTTGATTGTATCCTAGGCATAAGAACAAGATGTGTGAGCTGAGTGAGTTCATGTATCAGAGACAGGGAAAAATGTTCTGTTGTCGAATTTGTTACCCTGTAGTCCCTTACCTAAAAACATGTGCAGCTGCCCCGACAGGACCAGAAGCTTTGAAGGTAGGGACCGTATCTC
..................................................................(((((((((((((.....)))....))))))..........((((..((((((.....))))))..))))....((((((.((...((((.......))))...)).))))))...))))................................................................
.............................................................62............................................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormTAX577746(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189782TAX577739(Rovira)
total RNA. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
..................................................................................................................................................................CGAATTTGTTACCCTGTAGAAC..................................................................22122.002.007.003.003.002.001.003.001.00----1.00--1.00--------------
..................................................................................................................................................................CGAATTTGTTACCCTGTAGATC..................................................................2217.002.00---2.00--2.00----1.00---1.00---1.00---------
...................................................................................................................................................................GAATTTGTTACCCTGTAGAACC.................................................................2216.001.001.00-1.00----------1.00---1.00--1.00---1.00----
...................................................................................................................................................................GAATTTGTTACCCTGTAGATCC.................................................................2216.001.00-2.00--1.00--3.00---------------------
..................................................................................................................................................................CGAATTTGTTACCCTGTAGA....................................................................2012.002.001.001.00---------------------------
...........................................................................................CTAGGCATAAGAACAAGATGTGTGAGC....................................................................................................................................2712.002.00--------2.00--------------------
..................................................................................................................................................................CGAATTTGTTACCCTGTAGTAC..................................................................222.000.00----1.001.00-----------------------
..................................................................................................................................................................CGAATTTGTTACCCTGTAG.....................................................................1912.002.00---------2.00-------------------
..................................................................................................................................................................CGAATTTGTTACCCTGTAGAT...................................................................2112.002.00------------2.00----------------
...................................................................................................................................................................GAATTTGTTACCCTGTAGATTC.................................................................2212.001.00--2.00--------------------------
...........................................................................................................................................................................TACCCTGTAGTCCCTTAG.............................................................181.000.00----------1.00------------------
...........................................................................................................................................................................TACCCTGTAGTCCCTTATTGT..........................................................211.000.00----------1.00------------------
..................................................................AGGGGCCTGGCAAGTTTGAG....................................................................................................................................................................201.000.00----------------------1.00------
...................................................................................................................................................................GAATTTGTTACCCTGTAG.....................................................................1811.001.00----1.00------------------------
............................................................GTTTCTAGGGGCCTGG..............................................................................................................................................................................1621.001.00----------------1.00------------
..................................................................................................................................................................CGAATTTGTTACCCTGTAGATA..................................................................2211.002.00---------------------------1.00-
..........................GTATCAGGACTGTGATGATTACA.........................................................................................................................................................................................................2311.001.00---------------------1.00-------
........................................................................................................................................AGAGACAGGGAAAAATG.................................................................................................1760.170.17----------------------------0.17

Antisense strand
GGTCTTGAAGGAACTGAGTGAGGCCCGTATCAGGACTGTGATGATTACAGGTATGTATTTGTTTCTAGGGGCCTGGCAAGTTGATTGTATCCTAGGCATAAGAACAAGATGTGTGAGCTGAGTGAGTTCATGTATCAGAGACAGGGAAAAATGTTCTGTTGTCGAATTTGTTACCCTGTAGTCCCTTACCTAAAAACATGTGCAGCTGCCCCGACAGGACCAGAAGCTTTGAAGGTAGGGACCGTATCTC
..................................................................(((((((((((((.....)))....))))))..........((((..((((((.....))))))..))))....((((((.((...((((.......))))...)).))))))...))))................................................................
.............................................................62............................................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormTAX577746(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189782TAX577739(Rovira)
total RNA. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040028(GSM532913)
G026N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
..........................................................................................................GAACTCACTCAGCTCACACATCT......................................................................................................................... 2311.001.00-------------------------1.00---
........................................................................................................................................................................................................TGCAGCTGCCCCGACAAGT............................... 191.000.00------------------1.00----------
.......................................................................................................................GAGTGAGTTCATGTATCA................................................................................................................. 181.000.00-----------------------1.00-----
..................................................................................................................................................................................................................CCGACAGGACCAGAATTGC..................... 191.000.00---1.00-------------------------
...........................................................................................................................GAGTTCATGTATCAGTG.............................................................................................................. 171.000.00--------------------------1.00--