ID: uc011bno.1_intron_2_0_chr3_147114257_r.5p
GENE: (2)
chr3:147120315-147120564-


(1)
B-CELL 		(2)
BREAST 		(9)
CELL-LINE 		(2)
HEART 		(3)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(3)
SKIN

Sense strand
GGTGATGAGGAAACGATTACGGCTTTACCGAAACACTCTTAAAGAGTCAAGTAAGTTAAAATCCTCCTTTGAATATTGGTTTGCTGGTTTCTTTTCTTCTTCTTCTTCTTTTTTTTTTTTAAGTAGGAAGTTTTGTTTTGTCTTTTGTTTATGTTGGGTTGAGAGTTTGGGGGGAGTTTCTTGAGTTCAAATGAAACTTAGAACTCCTTAGTGTTCAATACATTTGCACACAAATCAATGACACAACGTC
.....................................................................................................(((((((((..........))).))))))........................................................................................................................
................................................................................................97..........................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189785SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335TAX577743(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
....................................................................................................TCTTCTTCTTTTTTTTTTTTAAAATG............................................................................................................................26426.000.00209.00160.0031.0022.001.003.00------------------
.....................................................................................................CTTCTTCTTTTTTTTTTTTAAAATG............................................................................................................................25127.000.0066.0042.0013.006.00--------------------
.................................................................................................TCTTCTTCTTCTTTTTTTTTTTTAAAATG............................................................................................................................2942.000.0026.009.003.002.00-2.00------------------
.........................................................................................TCTTTTCTTCTTCTTCTTCTTTTTTTTTTG...................................................................................................................................3023.000.0015.005.001.002.00--------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTCAG...................................................................................................................................2618.000.006.003.006.003.00--------------------
....................................................................................................TCTTCTTCTTTTTTTTTTTTAAAATT............................................................................................................................2617.000.006.006.002.002.00-1.00------------------
....................................................................................................TCTTCTTCTTTTTTTTTTTTAAATTG............................................................................................................................2612.000.007.005.00----------------------
....................................................................................................TCTTCTTCTTTTTTTTTTTTAAAAGG............................................................................................................................2611.000.005.004.001.001.00--------------------
.....................................................................................................CTTCTTCTTTTTTTTTTTTAAAATT............................................................................................................................258.000.006.001.001.00---------------------
..................................................................................................CTTCTTCTTCTTTTTTTTTTTTAAAATG............................................................................................................................286.000.002.002.002.00---------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTTTTTTAATTG.............................................................................................................................335.000.002.003.00----------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTTTCTTG................................................................................................................................295.000.001.001.001.002.00--------------------
.....................................................................................................CTTCTTCTTTTTTTTTTTTAAAAGG............................................................................................................................255.000.004.001.00----------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTTTTCTG..................................................................................................................................294.000.00--1.001.00--2.00-----------------
....................................................................................................TCTTCTTCTTTTTTTTTTTTAAAACG............................................................................................................................264.000.00-2.001.00--1.00------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTTTTTAATTG.............................................................................................................................324.000.001.003.00----------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTTTTCTTG................................................................................................................................303.000.00-1.001.001.00--------------------
...............................................................................................................................................................................................TGAAACTTAGAACTCTG..........................................173.000.00---------2.00------1.00-------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTTTTTCCTG..............................................................................................................................313.000.001.00--2.00--------------------
...................................................................................................TTCTTCTTCTTTTTTTTTGGAC.................................................................................................................................222.000.00----2.00-------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTTTCTG..................................................................................................................................282.000.001.00--1.00--------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTTTTTTCGG...............................................................................................................................312.000.00----2.00-------------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTTTTTCTAG................................................................................................................................282.000.001.00-1.00---------------------
.....................................................................................................CTTCTTCTTTTTTTTTTTTAAATTG............................................................................................................................252.000.001.001.00----------------------
...............................................................................................CTTCTTCTTCTTCTTTTTTTTTTTTCTTG..............................................................................................................................292.000.00-1.00-1.00--------------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTTTTTTTAACTTG............................................................................................................................322.000.001.00--1.00--------------------
......................................................................................................TTCTTCTTTTTTTTTTTTAAGCATA...........................................................................................................................252.000.00----2.00-------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTTCG.....................................................................................................................................262.000.00-----2.00------------------
....................................................................................................TCTTCTTCTTTTTTTTTTTTAAAAAT............................................................................................................................262.000.002.00-----------------------
..........................................................................................CTTTTCTTCTTCTTCTTCTTTTTTG.......................................................................................................................................252.000.00---2.00--------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTTCAG....................................................................................................................................272.000.00--1.001.00--------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTATG.....................................................................................................................................261.000.00---1.00--------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTTTTCTAG................................................................................................................................301.000.00---1.00--------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTTTCAAG................................................................................................................................291.000.00--1.00---------------------
.................................................................................................TCTTCTTCTTCTTTTTTTTTTTTAAAACG............................................................................................................................291.000.00--1.00---------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTTTTGAG..................................................................................................................................291.000.00----1.00-------------------
.................................................................................................................................GTTTTGTTTTGTCTTTCCCT.....................................................................................................201.000.00----1.00-------------------
.........................................................................................TCTTTTCTTCTTCTTCTTCTTTTTTTTTTTCT.................................................................................................................................321.000.00---1.00--------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTTTTCTTG.................................................................................................................................301.000.00--1.00---------------------
.......................................................................................................TCTTCTTTTTTTTTTTTAGAAG.............................................................................................................................221.000.00------1.00-----------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTTTTTTCG................................................................................................................................301.000.00--1.00---------------------
..................................................................................................CTTCTTCTTCTTTTTTTTTTTTAATCGT............................................................................................................................281.000.00-----1.00------------------
................................................................................................................................AGTTTTGTTTTGTCTTGGC.......................................................................................................191.000.00------1.00-----------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTTTTGGCT.................................................................................................................................271.000.00------1.00-----------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTCATT....................................................................................................................................251.000.00-1.00----------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTTTCAG...................................................................................................................................281.000.001.00-----------------------
.................................................................................................TCTTCTTCTTCTTTTTTTTTTTTCTGG..............................................................................................................................271.000.00----1.00-------------------
..........................................................................................CTTTTCTTCTTCTTCTTCTTTTTTTCG.....................................................................................................................................271.000.00---1.00--------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTTTTTTAAG...............................................................................................................................3111.001.00---1.00--------------------
..................................................................................................CTTCTTCTTCTTTTTTTTTTTTCCCG..............................................................................................................................261.000.00---1.00--------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTCTCG...................................................................................................................................271.000.00---1.00--------------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTTTTTTTACTAG.............................................................................................................................311.000.00---1.00--------------------
..........................................................................................CTTTTCTTCTTCTTCTTCTTTTTTTTCTTG..................................................................................................................................301.000.00--1.00---------------------
................................................AAGTAAGTTAAAATCCCGCT......................................................................................................................................................................................201.000.00------------1.00-----------
.....................................................................................................CTTCTTCTTTTTTTTTTTTAAAAAT............................................................................................................................251.000.001.00-----------------------
...............................................................................................................................AAGTTTTGTTTTGTCTTTTACC.....................................................................................................221.000.00------1.00-----------------
.........................................................................................TCTTTTCTTCTTCTTCTTCTTTTTTTTATTG..................................................................................................................................311.000.00--1.00---------------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTCG......................................................................................................................................221.000.00--1.00---------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTTTTTTCCTG..............................................................................................................................321.000.00-1.00----------------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTTTTTTTAAAAT.............................................................................................................................311.000.001.00-----------------------
..................................................................................................................................TTTTGTTTTGTCTTTTGGTCT...................................................................................................211.000.00----1.00-------------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTTTTTCTTA................................................................................................................................281.000.00------1.00-----------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTTTTGG...................................................................................................................................281.000.00-1.00----------------------
.........................................................................................TCTTTTCTTCTTCTTCTTCTTTTTTTTTTGG..................................................................................................................................311.000.00-1.00----------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTTTTTTAAAA..............................................................................................................................321.000.00-1.00----------------------
.................................................................................................TCTTCTTCTTCTTTTTTTTTTTTAAAATT............................................................................................................................291.000.00---1.00--------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTTTTTTAAAG..............................................................................................................................321.000.00-1.00----------------------
.......................................................................................TTTCTTTTCTTCTTCTTCTTGG.............................................................................................................................................221.000.00---1.00--------------------
..................................................................................................CTTCTTCTTCTTTTTTTTTTCAAT................................................................................................................................241.000.00--1.00---------------------
................................................................................................TTCTTCTTCTTCTTTTTTTTTTTTAATTG.............................................................................................................................291.000.00-1.00----------------------
...............................................................................................CTTCTTCTTCTTCTTTTTTTTCCAG..................................................................................................................................251.000.001.00-----------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTTTTTACT...............................................................................................................................301.000.001.00-----------------------
...................................................................................................................................TTTGTTTTGTCTTTTGTTTGGT.................................................................................................221.000.00----1.00-------------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTTTTTTTAACTTT............................................................................................................................321.000.00-1.00----------------------
.................................................................................................TCTTCTTCTTCTTTTTTTTTTTTCGGC..............................................................................................................................271.000.00----1.00-------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTCATT..................................................................................................................................271.000.00-1.00----------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTAG......................................................................................................................................251.000.00--1.00---------------------
...............................................................................................CTTCTTCTTCTTCTTTTTTTTTTTTAACTTG............................................................................................................................311.000.00-1.00----------------------
....................................................................................................TCTTCTTCTTTTTTTTTTTTAAATTA............................................................................................................................261.000.001.00-----------------------
...............................................................................................CTTCTTCTTCTTCTTTTTTTTCAG...................................................................................................................................241.000.00---1.00--------------------
.................................................................................................TCTTCTTCTTCTTTTTTTTTTTTAACTTG............................................................................................................................291.000.00---1.00--------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTCTTG....................................................................................................................................251.000.00---1.00--------------------
.................................................................................................TCTTCTTCTTCTTTTTTTTTTTTAATATC............................................................................................................................291.000.00-----1.00------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTCG.......................................................................................................................................231.000.00--1.00---------------------
.....................................................................................................CTTCTTCTTTTTTTTTTTTAAAACG............................................................................................................................251.000.00--1.00---------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTTTCTTG..................................................................................................................................291.000.00--1.00---------------------
................................................................................................TTCTTCTTCTTCTTTTTTTTTTCGGC................................................................................................................................261.000.00----1.00-------------------
.......................................................................................................TCTTCTTTTTTTTTTTTAGGG..............................................................................................................................211.000.00----1.00-------------------
.................................................................................................TCTTCTTCTTCTTTTTTTTTTTTAAAAGG............................................................................................................................291.000.001.00-----------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTTCG...................................................................................................................................261.000.00--1.00---------------------
......................................................................................................TTCTTCTTTTTTTTTTTTACG...............................................................................................................................211.000.00-1.00----------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTTTTCTTG.................................................................................................................................291.000.001.00-----------------------
.......................................................................................................TCTTCTTTTTTTTTTTTACCAG.............................................................................................................................221.000.00-1.00----------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTCTCC.......................................................................................................................................241.000.00----1.00-------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTTCTAG.................................................................................................................................281.000.00--1.00---------------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTTTTTTTACAG..............................................................................................................................301.000.00--1.00---------------------
..................................................................................................CTTCTTCTTCTTTTTTTTTTTTAAAACG............................................................................................................................281.000.00---1.00--------------------
............................................................................................TTTCTTCTTCTTCTTCTTTTTTCTG.....................................................................................................................................251.000.001.00-----------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTTTCAA...................................................................................................................................281.000.001.00-----------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTCAT...................................................................................................................................261.000.00-1.00----------------------
....................................................................................................TCTTCTTCTTTTTTTTTTTTACAG..............................................................................................................................241.000.00---1.00--------------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTTTTTCCCG................................................................................................................................281.000.00----1.00-------------------
.................................................................................................................................GTTTTGTTTTGTCTTTTGTTTATGTTTT.............................................................................................281.000.00----1.00-------------------
.......................................................................................................................TAAGTAGGAAGTTTTATAG................................................................................................................191.000.00------------------1.00-----
...........................................................................................................................TAGGAAGTTTTGTTTCGTT............................................................................................................191.000.00----1.00-------------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTTTTTTTAAAATG............................................................................................................................321.000.001.00-----------------------
.................................................................................................TCTTCTTCTTCTTTTTTTTTTCTAG................................................................................................................................251.000.00----1.00-------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTCAAG....................................................................................................................................251.000.00-1.00----------------------
.................................................................................................TCTTCTTCTTCTTTTTTTTTGGCC.................................................................................................................................241.000.00----1.00-------------------
...................................................................................................TTCTTCTTCTTTTTTTTTTTTACAG..............................................................................................................................251.000.00-1.00----------------------
...........................................................................................TTTTCTTCTTCTTCTTCTTTTTTTTCTG...................................................................................................................................281.000.00---1.00--------------------
..................................................................................................CTTCTTCTTCTTTTTTTTTTTTAACATG............................................................................................................................281.000.00-1.00----------------------
..................................................................................................CTTCTTCTTCTTTTTTTTTTTTAACCAG............................................................................................................................281.000.00--1.00---------------------
................................................................................................TTCTTCTTCTTCTTTTTTTTTTTTAAATTG............................................................................................................................301.000.00-----1.00------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTTTTTCTTG..............................................................................................................................311.000.00---1.00--------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTTTTTGTC...............................................................................................................................301.000.00----1.00-------------------
.....................................................................TGAATATTGGTTTGCTG....................................................................................................................................................................1720.500.50--------------------0.50---
...............................................................................................CTTCTTCTTCTTCTTTTTTTTTTTTAAG...............................................................................................................................2870.430.430.14-0.29---------------------
.........................................................................................TCTTTTCTTCTTCTTCTTCTTTTTTTTTTTTA.................................................................................................................................3230.330.33-0.33----------------------
.............................................................................................TTCTTCTTCTTCTTCTTTTTTTTTTTTAAG...............................................................................................................................3040.250.25--0.25---------------------
..............................................................................................TCTTCTTCTTCTTCTTTTTTTTTTTTAAG...............................................................................................................................2950.200.200.20-----------------------

Antisense strand
GGTGATGAGGAAACGATTACGGCTTTACCGAAACACTCTTAAAGAGTCAAGTAAGTTAAAATCCTCCTTTGAATATTGGTTTGCTGGTTTCTTTTCTTCTTCTTCTTCTTTTTTTTTTTTAAGTAGGAAGTTTTGTTTTGTCTTTTGTTTATGTTGGGTTGAGAGTTTGGGGGGAGTTTCTTGAGTTCAAATGAAACTTAGAACTCCTTAGTGTTCAATACATTTGCACACAAATCAATGACACAACGTC
.....................................................................................................(((((((((..........))).))))))........................................................................................................................
................................................................................................97..........................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189785SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335TAX577743(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
........................................................................................................................................................GTTGGGTTGAGAGTTTGG................................................................................ 183.000.00-------2.001.00---------------
................................................................................TTGCTGGTTTCTTTTGTC........................................................................................................................................................ 181.000.00----------1.00-------------
.................................................................................................TCTTCTTCTTCTTTTTTTTCTAT.................................................................................................................................. 231.000.00-------------1.00----------
..........................................................................................................................GTAGGAAGTTTTGTTTGG.............................................................................................................. 181.000.00--------------1.00---------
.................................................................................................................................................................AGAGTTTGGGGGGAGAAAG...................................................................... 191.000.00-----------------1.00------
......................................................................................................TTCTTCTTTTTTTTTTTTATTG.............................................................................................................................. 221.000.00--------1.00---------------
....................................................................................GAAGAAGAAGAAGAAAAGAAACCA.............................................................................................................................................. 2431.001.00-------------------0.67-0.33--
........................................AGGATTTTAACTTACTTGACTCTTT......................................................................................................................................................................................... 2511.001.00---------------1.00--------
..............................................................................................................CCTACTTAAAAAAAAAA........................................................................................................................... 1701.001.00-----------1.00------------
....................................................................................AAGAAGAAGAAAAGAAACCA.................................................................................................................................................. 2060.170.17----------------------0.17-
.....................................................................................AAGAAGAAGAAAAGAAACC.................................................................................................................................................. 1980.120.12-----------------------0.12