ID: uc011blo.1_intron_0_0_chr3_131181720_r.5p
GENE: (9)
chr3:131186735-131186984-


(1)
B-CELL 		(2)
BREAST 		(13)
CELL-LINE 		(4)
HEART 		(3)
LIVER 		(6)
OTHER 		(1)
RRP40.ip 		(2)
SKIN 		(1)
XRN.ip

Sense strand
TAATCTATGTAAATGGCTCTGTACCTGGACATAAAAATTGCTTAGTAAAGGTAAGTATAAGTGTCTTCTTTTTTTTTCCTTTTTTTTTTTTGTTTCTTACTCGCAAGCTAACAAATTACTATCTTTATTTTCTATTGTTTATATATGTGGATATTTGCCATAAAGTCTCCTTTTTCTCATATATGTGGCTTATAAATAAATGGCTGTTTTTCCACATGTTCTCTCCTGAATCTTTCTGCTTTTTAGTAGC
........................................................................................((((((.(((......)))..)))))).......................................................................................................................................
.....................................................................70.............................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189784SRR189785SRR343337SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189786SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTG................................................................................................................................................................2723.000.00--3.002.0014.00-4.00------------------------
..........................................................................TTTCCTTTTTTTTTTTTGTTGGC.........................................................................................................................................................2318.000.0014.004.00-----------------------------
............................................................................TCCTTTTTTTTTTTTGTTGGC.........................................................................................................................................................2115.000.0011.004.00-----------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTAAG............................................................................................................................................................2814.000.00--7.002.003.002.00-------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTGTCT.................................................................................................................................................................2514.000.0012.002.00-----------------------------
.........................................................................TTTTCCTTTTTTTTTTTTGTTGGC.........................................................................................................................................................2413.000.0011.002.00-----------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTG.................................................................................................................................................................2613.000.001.00-1.004.006.00-1.00------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTGTC..................................................................................................................................................................2412.000.007.005.00-----------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTTAAG...........................................................................................................................................................2911.000.00--5.004.001.001.00-------------------------
...........................................................................TTCCTTTTTTTTTTTTGTTGGC.........................................................................................................................................................228.000.008.00------------------------------
........................................................................TTTTTCCTTTTTTTTTTTTGTTGGC.........................................................................................................................................................257.000.003.004.00-----------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTTG...............................................................................................................................................................2827.002.50--0.502.002.50-2.00------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTTTG..............................................................................................................................................................2915.005.00---1.003.00-1.00------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTGGCC..............................................................................................................................................................244.000.00-4.00-----------------------------
........................................................................TTTTTCCTTTTTTTTTTTTGTTGG..........................................................................................................................................................244.000.004.00------------------------------
..........................................................................TTTCCTTTTTTTTTTTTGTTGGCT........................................................................................................................................................244.000.004.00------------------------------
............................................................................TCCTTTTTTTTTTTTGTTGGCT........................................................................................................................................................224.000.003.001.00-----------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTGGAC.............................................................................................................................................................263.000.003.00------------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTG....................................................................................................................................................................223.000.001.001.00-1.00---------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTG..................................................................................................................................................................253.000.00---1.002.00--------------------------
................................................................................TTTTTTTTTTTGTTTCTTACTCG...................................................................................................................................................2313.003.003.00------------------------------
................CTCTGTACCTGGACATAAAAACTG..................................................................................................................................................................................................................243.000.00-------1.002.00----------------------
...........................................................................TTCCTTTTTTTTTTTTGTTGGCT........................................................................................................................................................233.000.001.002.00-----------------------------
...........................................................................................................CTAACAAATTACTATCTTTATTTTCTATTG.................................................................................................................3013.003.00----2.001.00-------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTT................................................................................................................................................................2722.502.500.50-0.50-1.50--------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTGTAG..............................................................................................................................................................232.000.002.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTGGGG..............................................................................................................................................................242.000.001.001.00-----------------------------
...................................................................CTTTTTTTTTCCTTTTTAATG..................................................................................................................................................................212.000.00--2.00----------------------------
........................................................................TTTTTCCTTTTTTTTTAAGC..............................................................................................................................................................202.000.00-----2.00-------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTAAG..............................................................................................................................................................262.000.00----1.00---1.00----------------------
.........................................................................TTTTCCTTTTTTTTTTTTGCCC...........................................................................................................................................................222.000.002.00------------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTTGTTGGCT........................................................................................................................................................292.000.002.00------------------------------
..............................................................................CTTTTTTTTTTTTGTTTCGGTT......................................................................................................................................................222.000.002.00------------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTACAG..............................................................................................................................................................232.000.00-----1.00-1.00-----------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTTT...............................................................................................................................................................2822.002.000.50-0.500.500.50--------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTCCAG.............................................................................................................................................................272.000.00--2.00----------------------------
...............................................................................TTTTTTTTTTTTGTTTCGGG.......................................................................................................................................................202.000.002.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTGGC...............................................................................................................................................................232.000.001.001.00-----------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTTTCAG...........................................................................................................................................................282.000.00---1.001.00--------------------------
..................................................................TCTTTTTTTTTCCTTTTTTAAG..................................................................................................................................................................222.000.00--1.00---1.00------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTCTTG............................................................................................................................................................242.000.00-1.001.00----------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTGCCT.................................................................................................................................................................252.000.00-2.00-----------------------------
.........................................................................TTTTCCTTTTTTTTTTTTGCGA...........................................................................................................................................................222.000.002.00------------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTGCT.............................................................................................................................................................272.000.002.00------------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTCAAG...............................................................................................................................................................252.000.00---1.00-1.00-------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTTTC............................................................................................................................................................282.000.002.00------------------------------
...............................................................................TTTTTTTTTTTTGTTTCTTGCGG....................................................................................................................................................232.000.002.00------------------------------
.......................................................................................................CAAGCTAACAAATTACTATCTTTATT.........................................................................................................................2612.002.00-----2.00-------------------------
........................................................................TTTTTCCTTTTTTTTTTTTGTTGGCT........................................................................................................................................................262.000.001.001.00-----------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTG...................................................................................................................................................................232.000.00---2.00---------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTTCCAG..............................................................................................................................................................272.000.00--1.001.00---------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTTAG............................................................................................................................................................282.000.001.00-1.00----------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTTTTTTTG............................................................................................................................................................302.000.00------2.00------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTCG...............................................................................................................................................................282.000.001.00----1.00-------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTGGTC............................................................................................................................................................282.000.00-2.00-----------------------------
..........................................................................TTTCCTTTTTTTTTTTTGTGGGC.........................................................................................................................................................232.000.001.001.00-----------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTTTTG.............................................................................................................................................................3021.502.00---0.500.50-0.50------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTCTGT...........................................................................................................................................................251.000.001.00------------------------------
..............................................................................CTTTTTTTTTTTTGTTTCATG.......................................................................................................................................................211.000.001.00------------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTGTAGAG.........................................................................................................................................................271.000.001.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTCACT...........................................................................................................................................................271.000.001.00------------------------------
.......................................................................TTTTTTCCTTTTTTTTTTTTGTGAG..........................................................................................................................................................251.000.001.00------------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTTAAG............................................................................................................................................................271.000.00--1.00----------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTTCTC............................................................................................................................................................251.000.00-1.00-----------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTCCAT...........................................................................................................................................................271.000.00------1.00------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTAG.............................................................................................................................................................271.000.00---1.00---------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTCTAT...............................................................................................................................................................271.000.001.00------------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTTATTT...........................................................................................................................................................281.000.00---1.00---------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTAAAG............................................................................................................................................................271.000.00------1.00------------------------
...................................................................CTTTTTTTTTCCTTTTTTTAAAG................................................................................................................................................................231.000.00--1.00----------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTGTAGAG.........................................................................................................................................................291.000.001.00------------------------------
...............................................................................TTTTTTTTTTTTGTTTCTTGGCT....................................................................................................................................................231.000.001.00------------------------------
...................................................................CTTTTTTTTTCCTTTTTATAG..................................................................................................................................................................211.000.00--1.00----------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTGGGC..............................................................................................................................................................261.000.001.00------------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTCTGA...................................................................................................................................................................241.000.00-1.00-----------------------------
..........................................................................TTTCCTTTTTTTTTTTTGTTTTAG........................................................................................................................................................241.000.00---1.00---------------------------
................................................................CTTCTTTTTTTTTCCTAAG.......................................................................................................................................................................191.000.00--1.00----------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTCTTG............................................................................................................................................................271.000.00--1.00----------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTGGATG..........................................................................................................................................................281.000.00-1.00-----------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTTAGG............................................................................................................................................................251.000.00-----1.00-------------------------
.........................................................................TTTTCCTTTTTTTTTTTTGTTCG..........................................................................................................................................................231.000.00-1.00-----------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTCGGT............................................................................................................................................................251.000.001.00------------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTCTA................................................................................................................................................................251.000.001.00------------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTGGTC.............................................................................................................................................................261.000.00-1.00-----------------------------
.............................................................TGTCTTCTTTTTTTTTCGTT.........................................................................................................................................................................201.000.00-1.00-----------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTG....................................................................................................................................................................231.000.00---1.00---------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTCAGG...........................................................................................................................................................271.000.001.00------------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTAACG............................................................................................................................................................271.000.00--1.00----------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTTGTC............................................................................................................................................................251.000.001.00------------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTCCCC..............................................................................................................................................................261.000.001.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTCTGC............................................................................................................................................................261.000.00-1.00-----------------------------
........................................................................TTTTTCCTTTTTTTTTATGT..............................................................................................................................................................201.000.00-----1.00-------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTCTGT..............................................................................................................................................................291.000.001.00------------------------------
...........................................................................................................CTAACAAATTACTATCTTTACT.........................................................................................................................221.000.00-----1.00-------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTTTG................................................................................................................................................................2651.000.20--0.600.200.20--------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTTTTACTG............................................................................................................................................................301.000.00----1.00--------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTACAG................................................................................................................................................................241.000.00---1.00---------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTGC...................................................................................................................................................................231.000.00-1.00-----------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTCC.............................................................................................................................................................271.000.001.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTCGG.............................................................................................................................................................251.000.00-1.00-----------------------------
.......................................................................TTTTTTCCTTTTTTTTTTTTGTTGTTT........................................................................................................................................................271.000.001.00------------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTGGT...............................................................................................................................................................251.000.00-1.00-----------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTCGTT.............................................................................................................................................................251.000.001.00------------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTTCG............................................................................................................................................................281.000.00---1.00---------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTTTCG...............................................................................................................................................................261.000.00-1.00-----------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTAAAG............................................................................................................................................................281.000.00-----1.00-------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTGGTA.................................................................................................................................................................241.000.001.00------------------------------
................................................................................TTTTTTTTTTTGTTTCTTACTCGC..................................................................................................................................................2411.001.001.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTACG.............................................................................................................................................................251.000.00----1.00--------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTTTTCT...........................................................................................................................................................281.000.001.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTGGAC...........................................................................................................................................................271.000.00-1.00-----------------------------
...............................................................................TTTTTTTTTTTTGTTTCTTAGGGG...................................................................................................................................................241.000.001.00------------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTTCG.............................................................................................................................................................261.000.00--1.00----------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTCGCC...........................................................................................................................................................271.000.001.00------------------------------
..................................................................................TTTTTTTTTGTTTCTTGCGG....................................................................................................................................................201.000.001.00------------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTTATG............................................................................................................................................................251.000.00-1.00-----------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTCAAG.................................................................................................................................................................241.000.00--1.00----------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTGGTT...............................................................................................................................................................251.000.00-1.00-----------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTCAAG............................................................................................................................................................271.000.00---1.00---------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTGTCTTA.........................................................................................................................................................291.000.001.00------------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTGAGG...............................................................................................................................................................271.000.001.00------------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTTTGTT............................................................................................................................................................3111.001.00-----1.00-------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTAACC...............................................................................................................................................................251.000.001.00------------------------------
...............................................................................TTTTTTTTTTTTGTTTCGGAG......................................................................................................................................................211.000.00-1.00-----------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTGCAG..............................................................................................................................................................241.000.001.00------------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTCTG.................................................................................................................................................................251.000.00---1.00---------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTAATG............................................................................................................................................................261.000.00-----1.00-------------------------
................................................................................TTTTTTTTTTTGTTTCTTGCTC....................................................................................................................................................221.000.001.00------------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTCAAG..............................................................................................................................................................261.000.00--1.00----------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTCTAG...........................................................................................................................................................271.000.00---1.00---------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTGGGCG..........................................................................................................................................................281.000.001.00------------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTAG.....................................................................................................................................................................221.000.00--1.00----------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTGCC...............................................................................................................................................................231.000.001.00------------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTTTTTGTT............................................................................................................................................................3011.001.00-1.00-----------------------------
.........TAAATGGCTCTGTACCTGGACATAAAAACTG..................................................................................................................................................................................................................311.000.00-----1.00-------------------------
.........................................................................TTTTCCTTTTTTTTTTTTGTTTTAT........................................................................................................................................................251.000.00-----1.00-------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTGGTA...........................................................................................................................................................251.000.001.00------------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTTCCCT..............................................................................................................................................................271.000.001.00------------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTACAG...............................................................................................................................................................251.000.00--1.00----------------------------
.............TGGCTCTGTACCTGGACAT..........................................................................................................................................................................................................................1921.001.00-------------------------0.50-0.50---
.................................................................TTCTTTTTTTTTCCTTTTTTTTTTGGT..............................................................................................................................................................271.000.001.00------------------------------
........GTAAATGGCTCTGTACCTT...............................................................................................................................................................................................................................191.000.00---------------1.00---------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTGG...............................................................................................................................................................281.000.00----1.00--------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTGGGC..............................................................................................................................................................241.000.001.00------------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTCTTG...........................................................................................................................................................291.000.00---1.00---------------------------
................................................................CTTCTTTTTTTTTCCTTTTGTA....................................................................................................................................................................221.000.00-----1.00-------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTGAGT............................................................................................................................................................281.000.00-1.00-----------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTGGCT.................................................................................................................................................................251.000.001.00------------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTCG.............................................................................................................................................................231.000.00--1.00----------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTCCAG..............................................................................................................................................................261.000.00--1.00----------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTGG................................................................................................................................................................231.000.001.00------------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTAG...................................................................................................................................................................221.000.00---1.00---------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTAGC...............................................................................................................................................................251.000.00-----------------1.00-------------
.............................................................................CCTTTTTTTTTTTTGTCGTG.........................................................................................................................................................201.000.001.00------------------------------
..................................................................TCTTTTTTTTTCCTTTTTGAGT..................................................................................................................................................................221.000.00-1.00-----------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTCAG............................................................................................................................................................261.000.00---1.00---------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTGTTTTTGT.......................................................................................................................................................291.000.00-----1.00-------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTACAG..............................................................................................................................................................241.000.00-1.00-----------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTTGGC...........................................................................................................................................................291.000.001.00------------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTGGCC..............................................................................................................................................................261.000.00-1.00-----------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTATTT............................................................................................................................................................261.000.00--1.00----------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTGGC................................................................................................................................................................241.000.001.00------------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTCTTG..............................................................................................................................................................291.000.00---1.00---------------------------
...............................................................TCTTCTTTTTTTTTCCTTCCAG.....................................................................................................................................................................221.000.00--1.00----------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTGTTGGC.........................................................................................................................................................271.000.00-1.00-----------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTGT...................................................................................................................................................................231.000.001.00------------------------------
...........................................................................................................CTAACAAATTACTATCTTTATTTTCATTG..................................................................................................................291.000.00-----1.00-------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTCCTG............................................................................................................................................................241.000.00------1.00------------------------
..........................................................................TTTCCTTTTTTTTTTTTGTTGGGG........................................................................................................................................................241.000.00-1.00-----------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTCTG...............................................................................................................................................................281.000.001.00------------------------------
.............................................................................................................AACAAATTACTATCTTTATTTTCTATTG.................................................................................................................2811.001.00----1.00--------------------------
.............................................................TGTCTTCTTTTTTTTTCCTTTTTTTCTTG................................................................................................................................................................291.000.001.00------------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTCTG................................................................................................................................................................261.000.00---1.00---------------------------
...............................................................TCTTCTTTTTTTTTCCTTTATG.....................................................................................................................................................................221.000.00--1.00----------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTGCAG..............................................................................................................................................................231.000.001.00------------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTACCC...........................................................................................................................................................251.000.001.00------------------------------
.....................TACCTGGACATAAAATTG...................................................................................................................................................................................................................181.000.00----------1.00--------------------
...................................................................CTTTTTTTTTCCTTTTTTTTAGT................................................................................................................................................................231.000.00-----1.00-------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTAATA..............................................................................................................................................................241.000.00---1.00---------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTAATG..............................................................................................................................................................241.000.00---1.00---------------------------
........................................................................TTTTTCCTTTTTTTTTTTTGTTACAA........................................................................................................................................................261.000.00-1.00-----------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTGTC.............................................................................................................................................................271.000.00-1.00-----------------------------
................................................................................TTTTTTTTTTTGTTTCTTATC.....................................................................................................................................................211.000.00-1.00-----------------------------
.........................................................................TTTTCCTTTTTTTTTTTTGTCGGC.........................................................................................................................................................241.000.001.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTACG...............................................................................................................................................................231.000.00------1.00------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTCCAG...........................................................................................................................................................291.000.00---1.00---------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTTTGTC............................................................................................................................................................311.000.00-----1.00-------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTGCTG...........................................................................................................................................................251.000.001.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTACG............................................................................................................................................................261.000.001.00------------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTGAGC..............................................................................................................................................................261.000.001.00------------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTAT..............................................................................................................................................................251.000.00------1.00------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTGTC..................................................................................................................................................................251.000.001.00------------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTTGTTTCTTAC......................................................................................................................................................3111.001.00-----1.00-------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTCTCA............................................................................................................................................................241.000.00-----1.00-------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTTGGGCT..........................................................................................................................................................271.000.001.00------------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTTTTAAG.............................................................................................................................................................281.000.00--1.00----------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTTGCAG...........................................................................................................................................................261.000.00-1.00-----------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTGTC............................................................................................................................................................261.000.001.00------------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTTTTTAAAT...........................................................................................................................................................311.000.00---1.00---------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTGCTGG..........................................................................................................................................................261.000.001.00------------------------------
..............................................................GTCTTCTTTTTTTTTCCTTCTC......................................................................................................................................................................221.000.00-------1.00-----------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTAT.................................................................................................................................................................231.000.00--1.00----------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTCATG............................................................................................................................................................241.000.00---1.00---------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTGTCC..............................................................................................................................................................241.000.00--1.00----------------------------
...........................................................................................................CTAACAAATTACTATCTTTATTTTCTATTT.................................................................................................................301.000.00----1.00--------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTAATT.............................................................................................................................................................271.000.001.00------------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTTGTGGGG.........................................................................................................................................................281.000.001.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTGTTATTT........................................................................................................................................................301.000.001.00------------------------------
................................................................CTTCTTTTTTTTTCCTTTTCTG....................................................................................................................................................................221.000.00--1.00----------------------------
............................................................................TCCTTTTTTTTTTTTGTCGGC.........................................................................................................................................................211.000.00-1.00-----------------------------
........................................................................TTTTTCCTTTTTTTTTTTTGCTCT..........................................................................................................................................................241.000.00-1.00-----------------------------
................................................................CTTCTTTTTTTTTCCTTTTGTCC...................................................................................................................................................................231.000.001.00------------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTCTG..............................................................................................................................................................291.000.00-----1.00-------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTTGGTC...........................................................................................................................................................261.000.001.00------------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTTTTTCAG............................................................................................................................................................291.000.00-1.00-----------------------------
................................................................CTTCTTTTTTTTTCCTTTTGGG....................................................................................................................................................................221.000.001.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTCAAG.............................................................................................................................................................251.000.00--1.00----------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTTTTTAAAG...........................................................................................................................................................301.000.00--1.00----------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTTTTGTAGAG.........................................................................................................................................................281.000.001.00------------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTAATC...........................................................................................................................................................251.000.001.00------------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTTTCC...............................................................................................................................................................261.000.00-----1.00-------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTTAATG...........................................................................................................................................................271.000.00---1.00---------------------------
.....................................................................TTTTTTTTCCTTTTTTTTTGGC...............................................................................................................................................................221.000.001.00------------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTATC................................................................................................................................................................251.000.001.00------------------------------
.......................................................................TTTTTTCCTTTTTTTTTTTTGTTGCC.........................................................................................................................................................261.000.001.00------------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTTCTTC...........................................................................................................................................................281.000.001.00------------------------------
...........................................................................TTCCTTTTTTTTTTTTGTTGGCA........................................................................................................................................................231.000.001.00------------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTCAT.............................................................................................................................................................251.000.00----1.00--------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTGGTT...............................................................................................................................................................241.000.00-1.00-----------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTCCTC...........................................................................................................................................................251.000.00-1.00-----------------------------
............................................................................TCCTTTTTTTTTTTTGTCGTG.........................................................................................................................................................211.000.00-1.00-----------------------------
..........................................................................TTTCCTTTTTTTTTTTTGCACC..........................................................................................................................................................221.000.001.00------------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTTCAAG..............................................................................................................................................................271.000.00--1.00----------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTGCC..................................................................................................................................................................241.000.001.00------------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTTTTTTCTG...........................................................................................................................................................301.000.00---1.00---------------------------
.........................................................................TTTTCCTTTTTTTTTTTTGCTGG..........................................................................................................................................................231.000.00-1.00-----------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTCTTG............................................................................................................................................................281.000.001.00------------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTTTTTTG.............................................................................................................................................................291.000.00---1.00---------------------------
....................................................................TTTTTTTTTCCTTTTTTTTTTTCCAT............................................................................................................................................................261.000.00----1.00--------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTGC...............................................................................................................................................................251.000.001.00------------------------------
......................................................................TTTTTTTCCTTTTTTTTTTTTGCCTG..........................................................................................................................................................261.000.00--1.00----------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTTTTG...............................................................................................................................................................271.000.00------1.00------------------------
.........................................................................TTTTCCTTTTTTTTTTTTGTTGGCT........................................................................................................................................................251.000.001.00------------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTTCATG...........................................................................................................................................................281.000.00--1.00----------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTTTTTG..............................................................................................................................................................2730.670.67--0.33---0.33------------------------
......ATGTAAATGGCTCTGTACCTGGAC............................................................................................................................................................................................................................2420.500.50----------------------0.50--------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTG..............................................................................................................................................................2640.500.500.25---0.25--------------------------
...................................................................CTTTTTTTTTCCTTTTTTTTTTTTG..............................................................................................................................................................2560.500.50--0.170.170.17--------------------------
.........TAAATGGCTCTGTACCTGGAC............................................................................................................................................................................................................................2120.500.50-----------0.50-------------------
.....TATGTAAATGGCTCTGTACCTGGAC............................................................................................................................................................................................................................2520.500.50-------------0.50-----------------
......................ACCTGGACATAAAAATTGCTTAGT............................................................................................................................................................................................................2420.500.50--------------------------0.50----
............ATGGCTCTGTACCTGGACATAAAAAT....................................................................................................................................................................................................................2620.500.50-------------------0.50-----------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTTGGAC............................................................................................................................................................3120.502.50-0.50-----------------------------
......................ACCTGGACATAAAAATTGC.................................................................................................................................................................................................................1920.500.50-----------------------0.50-------
.....TATGTAAATGGCTCTGTACCTGGACATA.........................................................................................................................................................................................................................2820.500.50-----------------------------0.50-
......ATGTAAATGGCTCTGTACCTGGA.............................................................................................................................................................................................................................2320.500.50------------------------0.50------
........GTAAATGGCTCTGTACCTGGACATA.........................................................................................................................................................................................................................2520.500.50-------------------0.50-----------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTTAAG.............................................................................................................................................................3020.502.50---0.50---------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTTGGGG............................................................................................................................................................3120.502.500.50------------------------------
......ATGTAAATGGCTCTGTACC.................................................................................................................................................................................................................................1920.500.50-------------0.50-----------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTTCC..............................................................................................................................................................2920.502.500.50------------------------------
...............................................................TCTTCTTTTTTTTTCCTTTTTTTTTTTTCTG............................................................................................................................................................3120.502.00--0.50----------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTTAAG...............................................................................................................................................................2750.400.20--0.40----------------------------
.................................................................TTCTTTTTTTTTCCTTTTTTTTTTTTGAGA...........................................................................................................................................................3030.330.670.33------------------------------
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTGC.............................................................................................................................................................2740.250.500.25------------------------------
.....TATGTAAATGGCTCTGT....................................................................................................................................................................................................................................1740.250.25------------------------------0.25
..................................................................TCTTTTTTTTTCCTTTTTTTTTTTTGGGG...........................................................................................................................................................2940.250.500.25------------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTTT.................................................................................................................................................................2550.200.20---0.20---------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTT..................................................................................................................................................................2450.200.20-0.20-----------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTTG.................................................................................................................................................................2550.200.20----0.20--------------------------
................................................................CTTCTTTTTTTTTCCTTTTTTTTTTGC...............................................................................................................................................................2750.200.200.20------------------------------

Antisense strand
TAATCTATGTAAATGGCTCTGTACCTGGACATAAAAATTGCTTAGTAAAGGTAAGTATAAGTGTCTTCTTTTTTTTTCCTTTTTTTTTTTTGTTTCTTACTCGCAAGCTAACAAATTACTATCTTTATTTTCTATTGTTTATATATGTGGATATTTGCCATAAAGTCTCCTTTTTCTCATATATGTGGCTTATAAATAAATGGCTGTTTTTCCACATGTTCTCTCCTGAATCTTTCTGCTTTTTAGTAGC
........................................................................................((((((.(((......)))..)))))).......................................................................................................................................
.....................................................................70.............................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189784SRR189785SRR343337SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189786SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.............................................................................CCTTTTTTTTTTTTGTGAAG......................................................................................................................................................... 204.000.00---------3.00----1.00----------------
...............................................................................................................................................................................................................TTTTCCACATGTTCTCTA......................... 182.000.00------------1.00-------1.00----------
...........................................AGTAAAGGTAAGTATCTCC............................................................................................................................................................................................ 191.000.00------------------1.00------------
..............................................................................CTTTTTTTTTTTTGTTTTATT....................................................................................................................................................... 211.000.00----------------1.00--------------
.............................................................................CCTTTTTTTTTTTTGTGCGG......................................................................................................................................................... 201.000.00----------1.00--------------------
..........................................................................................................................................................................................GGCTTATAAATAAATGGT.............................................. 181.000.00-------1.00-----------------------
.........................................................................................................................................ATATCCACATATATAAA................................................................................................ 1790.110.11----------0.11--------------------