ID: uc011bjw.1_intron_26_0_chr3_123456391_r.3p
GENE: (4)
chr3:123456341-123456590-


(2)
BRAIN 		(15)
BREAST 		(4)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(4)
LIVER 		(3)
OTHER 		(1)
RRP40.ip

Sense strand
CACACCACATCCACAGACCTCAAGTCAGGGCCCCTGAACTGTTTAAAGTTGGCTCTCTGAGCACATTGACAGGGCCCACAGCAGAGGACGCTGCTGCCCAGGCCCTGGAGTCTATCCCACTAGGATTGGCAGGAGGCAGGAGGACACAGCCAGAAGGTGAGCAGATTTGTATGACCAAGTTACCCCATTGCCATCCACAGGGAAATGTTCCACTGCAGCCGAGTGCCCGTGTGTCTGTGTCTGAGAAGAA
.....................................................(((((..((.......(((((((..((((((......))))))....)))))))..(((.((((.....)))).))).....)).)))))...........................................................................................................
..................................................51................................................................................................149...................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577453(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785TAX577590(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786GSM532887(GSM532887)
G761N. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
...........................................................AGCACATTGACAGGGATTT............................................................................................................................................................................1930.000.002.004.006.002.005.004.001.001.00-----1.00--1.00----1.001.00----1.00----
...........................................................AGCACATTGACAGGGATTA............................................................................................................................................................................198.000.001.001.001.002.00--1.00----1.00-----------1.00--------
...........................................................AGCACATTGACAGGGATT.............................................................................................................................................................................186.000.001.00-1.001.00-1.00-----------1.00-------1.00------
...........................................................AGCACATTGACAGGGTTTT............................................................................................................................................................................194.000.002.00---1.00------1.00--------------------
...........................................................AGCACATTGACAGGGAATT............................................................................................................................................................................193.000.00--1.001.00--1.00-------------------------
....................................................................................................................................................................................................................................GTGTGTCTGTGTCTGAGAAGAA2213.003.00--------2.00---------------------1.00-
...........................................................AGCACATTGACAGGGAATA............................................................................................................................................................................192.000.00-------------------1.00---------1.00--
...........................................................AGCACATTGACAGGGCTTT............................................................................................................................................................................192.000.00---1.001.00---------------------------
...........................................................AGCACATTGACAGGGATGT............................................................................................................................................................................192.000.00-----1.00--------1.00-----------------
...........................................................AGCACATTGACAGGGAT..............................................................................................................................................................................172.000.001.00-------------------------1.00-----
...........................................................AGCACATTGACAGGGAGCT............................................................................................................................................................................191.000.00----------1.00---------------------
...........................................................AGCACATTGACAGGGCTTTC...........................................................................................................................................................................201.000.00-------1.00------------------------
......................................................................................................................................GGCAGGAGGACACAGCGGAC................................................................................................201.000.00-1.00------------------------------
...........................................................AGCACATTGACAGGGACT.............................................................................................................................................................................181.000.00---1.00----------------------------
...........................................................AGCACATTGACAGGGTA..............................................................................................................................................................................171.000.00------------------1.00-------------
...........................................................AGCACATTGACAGGGTTTC............................................................................................................................................................................191.000.001.00-------------------------------
...........................................................AGCACATTGACAGGGATTG............................................................................................................................................................................191.000.00----------1.00---------------------
...........................................................AGCACATTGACAGGGTTTA............................................................................................................................................................................191.000.00---------------1.00----------------
...........................................................AGCACATTGACAGGGATAA............................................................................................................................................................................191.000.001.00-------------------------------
...........................................................AGCACATTGACAGGGATGG............................................................................................................................................................................191.000.00-1.00------------------------------
...........................................................AGCACATTGACAGGGTCTA............................................................................................................................................................................191.000.00----1.00---------------------------
................................................................................................................................GCAGGAGGCAGGAGGATCGG......................................................................................................201.000.00------------1.00-------------------
...........................................................AGCACATTGACAGGGCTGT............................................................................................................................................................................191.000.001.00-------------------------------
...........................................................AGCACATTGACAGGGAGTT............................................................................................................................................................................191.000.00-1.00------------------------------
...........................................................AGCACATTGACAGGGATAG............................................................................................................................................................................191.000.00-1.00------------------------------
.................................................................................................................................CAGGAGGCAGGAGGACACTC.....................................................................................................201.000.00----------------------------1.00---
........................TCAGGGCCCCTGAACTGTTT..............................................................................................................................................................................................................2011.001.00---------1.00----------------------
.................................................................................................................................CAGGAGGCAGGAGGACA........................................................................................................1760.170.17-------------------------------0.17

Antisense strand
CACACCACATCCACAGACCTCAAGTCAGGGCCCCTGAACTGTTTAAAGTTGGCTCTCTGAGCACATTGACAGGGCCCACAGCAGAGGACGCTGCTGCCCAGGCCCTGGAGTCTATCCCACTAGGATTGGCAGGAGGCAGGAGGACACAGCCAGAAGGTGAGCAGATTTGTATGACCAAGTTACCCCATTGCCATCCACAGGGAAATGTTCCACTGCAGCCGAGTGCCCGTGTGTCTGTGTCTGAGAAGAA
.....................................................(((((..((.......(((((((..((((((......))))))....)))))))..(((.((((.....)))).))).....)).)))))...........................................................................................................
..................................................51................................................................................................149...................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577453(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785TAX577590(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189786GSM532887(GSM532887)
G761N. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
............................................................................................................................................................................................TGCCATCCACAGGGAGAC............................................ 181.000.00------------1.00-------------------
.......................................................................................................................................................................TGTATGACCAAGTTATG.................................................................. 171.000.00--------------------1.00-----------
..................................................GGCTCTCTGAGCACATTGGAA................................................................................................................................................................................... 211.000.00------------------------1.00-------
......................................................................................GACGCTGCTGCCCAGGCA.................................................................................................................................................. 181.000.00-------1.00------------------------
............................................................................................GCTGCCCAGGCCCTGTCAG........................................................................................................................................... 191.000.00---------1.00----------------------