ID: uc011bjw.1_intron_14_0_chr3_123401158_r.3p
GENE: (16)
chr3:123401108-123401357-


(3)
BRAIN
(2)
BREAST
(10)
CELL-LINE
(2)
CERVIX
(1)
HEART
(2)
LIVER
(1)
OTHER
(48)
SKIN
(1)
XRN.ip

Sense strand
GGGTAGTGGACGGTCCTTCTTTGATGCTCTCATGGAGAGTGAAATAGGTTGCCTGGACACAGGCGCTGTTCTGCCCAGCGGGCACAAAGGGCCCTCAGAGTTGGGGAGGAGTTTGGCTGAGGTGGGATTTTGACTGAGAGACCCCCTTTGCTCATTTCCTCAGCAGCTGCTAACATTTATTGTTACCTGTTTCATTCCAGATGCTCCAGCCAGTGAGAACACCAAGGCCCCAGAGATGAAATCCCGGAGG
..................................................(((((....)))))((((((((.((((((((((.......)))).....)))))).))))...))))...((.((..((((....))))..)))).........................................................................................................
..................................................51............................................................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR038854(GSM458537)
MM653. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
..........................................................................................................................TGGGATTTTGACTGAACGC.............................................................................................................1932.000.00-4.003.003.001.00-2.001.00--3.001.001.001.00-2.002.00-2.00--1.00--1.00---1.00-1.001.001.00--------------------------------------
..........................................................................................................................TGGGATTTTGACTGAACG..............................................................................................................1815.000.00--1.00-1.002.001.00----1.00-1.00---1.00-1.002.00------------1.00---1.00---------1.00-----1.00-----------------
..........................................................................................................................TGGGATTTTGACTGAAC...............................................................................................................1710.000.00----1.00--2.00----1.00------1.00-----1.00---------1.001.00-------1.001.00-------------------------
.........................................................................................................................GTGGGATTTTGACTGA.................................................................................................................1653.603.60---0.200.20-------0.20---------0.200.40-0.20--0.20---------------------------0.20-0.60-0.400.40-----0.20-0.20-
.........................................................................................................................GTGGGATTTTGACTGAAC...............................................................................................................1853.003.60---0.60--0.20------0.20--------------------------------0.40--------0.40-0.60-0.20---0.20------0.20
.........................................................................................................................GTGGGATTTTGACTGAACGC.............................................................................................................2053.003.60----0.200.40--------0.20-------0.40---0.20-------------------0.20---------0.20--0.20--0.40--0.200.20-0.20--
.........................................................................................................................GTGGGATTTTGACTGAACG..............................................................................................................1953.003.60----0.20-0.200.20---0.600.20-----------0.400.20-0.20------------------0.40---------0.20-------0.20------
........................................................................................................................GGTGGGATTTTGACTGGG................................................................................................................183.000.00--------3.00--------------------------------------------------------------
.....................................................................................AAAGGGCCCTCAGAGTCCCG.................................................................................................................................................201.000.001.00----------------------------------------------------------------------
...........................................................................................................................................................................................................................................ATGAAATCCCGGAGG1511.001.00---------------------------1.00-------------------------------------------
.................................................................................................................TGGCTGAGGTGGGATTTTGACTG..................................................................................................................2311.001.00------------------------------------------1.00----------------------------
.........................................................................................................................GTGGGATTTTGACTGCC................................................................................................................171.000.00-----------------1.00-----------------------------------------------------
.......................................................................................................................................................................................................................AGAACACCAAGGCCCCAGAG...............2011.001.00------------------------------------------------1.00----------------------
.....................................................................................................................................................................................................................................CCAGAGATGAAATCCCGGA..1911.001.00--------------------------------------------------1.00--------------------
...........................................................................................................GGAGTTTGGCTGAGGTGGCA...........................................................................................................................201.000.00---------------------------------------1.00-------------------------------
....................................................................................................TTGGGGAGGAGTTTGTCAT...................................................................................................................................191.000.00---------------------------------------------------1.00-------------------
.......................................................................................................................................................................................................GATGCTCCAGCCAGTGAGAA...............................2011.001.00----------------------------------------1.00------------------------------
...............................................................................................................................................................................................................................AAGGCCCCAGAGATGAAATCCCG....2311.001.00------------------------------------------------------1.00----------------
.....................................................................................AAAGGGCCCTCAGAGTCCGG.................................................................................................................................................201.000.001.00----------------------------------------------------------------------
.........................................................................................................................................................................................................................................AGATGAAATCCCGGAGG1711.001.00-----1.00-----------------------------------------------------------------
........................................................................................................................GGTGGGATTTTGACTGAA................................................................................................................181.000.00--------------------------1.00--------------------------------------------
................................................................................................................................TTTGACTGAGAGACCG..........................................................................................................161.000.00----------------------1.00------------------------------------------------
...........................................................................................................................................................................................................................CACCAAGGCCCCAGAGATGA...........2011.001.00----------------------------------1.00------------------------------------
.........................................................................................................................GTGGGATTTTGACTGGG................................................................................................................171.000.00-----------------------1.00-----------------------------------------------
............................................................................................................GAGTTTGGCTGAGGTATTG...........................................................................................................................191.000.001.00----------------------------------------------------------------------
....................................................................................................TTGGGGAGGAGTTTGGATAG..................................................................................................................................201.000.00-------------------------------------------1.00---------------------------
.....................................................................................................................TGAGGTGGGATTTTGTTCC..................................................................................................................191.000.00--------------------------------------1.00--------------------------------
.....................................................................................................................TGAGGTGGGATTTTGTAA...................................................................................................................181.000.001.00----------------------------------------------------------------------
.....................................................TGGACACAGGCGCTGCATG..................................................................................................................................................................................191.000.00-------------------------------------------------1.00---------------------
.........................................................................................................................GTGGGATTTTGACTGAAA...............................................................................................................1850.203.60-------------------------------------------------------0.20---------------
.........................................................................................................................GTGGGATTTTGACTGAAACG.............................................................................................................2050.203.60-------------------------------------------------------0.20---------------

Antisense strand
GGGTAGTGGACGGTCCTTCTTTGATGCTCTCATGGAGAGTGAAATAGGTTGCCTGGACACAGGCGCTGTTCTGCCCAGCGGGCACAAAGGGCCCTCAGAGTTGGGGAGGAGTTTGGCTGAGGTGGGATTTTGACTGAGAGACCCCCTTTGCTCATTTCCTCAGCAGCTGCTAACATTTATTGTTACCTGTTTCATTCCAGATGCTCCAGCCAGTGAGAACACCAAGGCCCCAGAGATGAAATCCCGGAGG
..................................................(((((....)))))((((((((.((((((((((.......)))).....)))))).))))...))))...((.((..((((....))))..)))).........................................................................................................
..................................................51............................................................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR038854(GSM458537)
MM653. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
.................................................................................................................TGGCTGAGGTGGGATCCA....................................................................................................................... 184.000.00---------3.00-----------1.00-------------------------------------------------
..........................................................................................................................................................................................CTGTTTCATTCCAGATGT.............................................. 181.000.00-----------------------------------------1.00-----------------------------
......................................................................................................GGGGAGGAGTTTGGCCAT.................................................................................................................................. 181.000.00----------------------------------------------------1.00------------------
............................................................................................................GAGTTTGGCTGAGGTACTG........................................................................................................................... 191.000.00-----------------------------1.00-----------------------------------------
....................................................................................................................................................................................................CCAGATGCTCCAGCCAGGCGG................................. 211.000.00--------------1.00--------------------------------------------------------
...........................................................................................................................................................TTCCTCAGCAGCTGCTGAGG........................................................................... 201.000.00--------------1.00--------------------------------------------------------