ID: uc011bha.1_intron_4_0_chr3_100065100_f.5p
GENE: NIT2(5)
chr3:100065050-100065299+


(10)
B-CELL 		(3)
BRAIN 		(6)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CTGCTACGACATGCGGTTTGCAGAGCTTGCACAAATCTACGCACAGAGAGGTGAGGCAGTGTAATAGCTGTGTTATGTGGGTGCTTGGAGGCTTGGTTCTAGGCTGGTCTATGTGGGATCCTTAGTCAAGAAAAGCTGGGAGAGGGCTCTTTAATTTCTCCATCTTCAGCCCTTTCACCCCCATGAGGCTTCCCAGACTTTTGCTGTGTATGGATGACAGGGTTTTTGGGGGGTTGTAATTAAACACATC
....................................................................................................................................((((((((((((((((...................))))))))).)).......)))))...........................................................
.............................................................................................................................126..............................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR189782TAX577744(Rovira)
total RNA. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189786SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343334SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
..................................................................................................................................AAAAGCTGGGAGAGGGCGA.....................................................................................................19114.002.001.001.001.001.002.001.002.00-----------------------------1.001.001.00-1.00--1.00--------------
..................................................................................................................................AAAAGCTGGGAGAGGGCGAA....................................................................................................20112.002.00---2.001.00--1.00-1.00-1.002.00---2.00----1.00---------------------------1.00--------
..................................................................................................................................AAAAGCTGGGAGAGGGCGAT....................................................................................................2015.002.001.00----------1.00-----------1.00----------1.00-----------------1.00-----
..................................................................................................................................AAAAGCTGGGAGAGGGCGTT....................................................................................................2013.002.001.00--1.00----------------------1.00-------------------------------
..................................................................................................................................AAAAGCTGGGAGAGGGCGAAT...................................................................................................2113.002.00-----1.00-------------------------1.00----------1.00---------------
..................................................................................................................................AAAAGCTGGGAGAGGGCGATA...................................................................................................2113.002.003.00---------------------------------------------------------
.............................................................................................................................TCAAGAAAAGCTGGGCTG...........................................................................................................183.000.00---------------2.00--1.00---------------------------------------
..................................................................................................................................AAAAGCTGGGAGAGGGCG......................................................................................................1812.002.00--1.00----------------1.00--------------------------------------
...................................................................................................................................AAAGCTGGGAGAGGGCGAA....................................................................................................192.000.001.00--------1.00------------------------------------------------
...................................................................................................................................AAAGCTGGGAGAGGGCAA.....................................................................................................182.000.00-1.00---1.00----------------------------------------------------
..................................................................................................................................AAAAGCTGGGAGAGGGC.......................................................................................................1712.002.00----------------------------1.001.00----------------------------
..................................................................................................................................AAAAGCTGGGAGAGGGCGT.....................................................................................................1912.002.00--------2.00-------------------------------------------------
.........................................................................................................................................................................CCCTTTCACCCCCATAAC...............................................................181.000.00------------------------------------------------------1.00---
....................................................................................................................................AAGCTGGGAGAGGGCGAAA...................................................................................................191.000.00-1.00--------------------------------------------------------
...................................................................................................................................................TCTTTAATTTCTCCATCTCCT..................................................................................211.000.00-----------------------------------------------------1.00----
..............................................AGAGGTGAGGCAGTGTAGCTC.......................................................................................................................................................................................211.000.00---------------------------1.00------------------------------
.............CGGTTTGCAGAGCTTGCACA.........................................................................................................................................................................................................................2011.001.00---------------------------------------1.00------------------
...........................................................................................................................................................................................................CTGTGTATGGATGACTG..............................171.000.00--------------------------------1.00-------------------------
..........................................ACAGAGAGGTGAGGCAGTTGC...........................................................................................................................................................................................211.000.00------------------------------------------------1.00---------
.............................................................................................................................................................................................................GTGTATGGATGACAGTATC..........................191.000.00---------------------------------------------1.00------------
..................................................................................................................................AAAAGCTGGGAGAGGGCGAGA...................................................................................................2111.002.00-------1.00--------------------------------------------------
.........................................................................TATGTGGGTGCTTGGAGG...............................................................................................................................................................1811.001.00--------------------1.00-------------------------------------
......CGACATGCGGTTTGCAGAG.................................................................................................................................................................................................................................1911.001.00-------------------------1.00--------------------------------
.TGCTACGACATGCGGTTTGCAGAG.................................................................................................................................................................................................................................2411.001.00-----------------1.00----------------------------------------
..................................................................................................................................AAAAGCTGGGAGAGGGTGA.....................................................................................................191.000.00--1.00-------------------------------------------------------
...................................................................................................................................AAAGCTGGGAGAGGGCTCC....................................................................................................191.000.00--------------1.00-------------------------------------------
..........ATGCGGTTTGCAGAGCTTGCACAAATC.....................................................................................................................................................................................................................2711.001.00-----------------------------------------------1.00----------
............GCGGTTTGCAGAGCTTGCACAAATA.....................................................................................................................................................................................................................251.000.00-----------------1.00----------------------------------------
..................................................................................................................................AAAAGCTGGGAGAGGGCGAAA...................................................................................................2111.002.001.00---------------------------------------------------------
..GCTACGACATGCGGTTTGCA....................................................................................................................................................................................................................................2011.001.00----------------------1.00-----------------------------------
..................................................................................................................................AAAAGCTGGGAGAGGGCGATT...................................................................................................2111.002.00------------------------1.00---------------------------------
..............................................................AATAGCTGTGTTATGTGG..........................................................................................................................................................................1811.001.00-----------------------------------------1.00----------------
..................................................................................................................................AAAAGCTGGGAGAGGGGTGA....................................................................................................201.000.00--1.00-------------------------------------------------------
.......................................................................................................................................CTGGGAGAGGGCTCTTTACTCC.............................................................................................221.000.00-1.00--------------------------------------------------------
..................................................................................................................................AAAAGCTGGGAGAGGGGCGT....................................................................................................201.000.00--1.00-------------------------------------------------------
...................................................................................................TAGGCTGGTCTATGTGGGATC..................................................................................................................................2111.001.00----------1.00-----------------------------------------------
.............................................................................TGGGTGCTTGGAGGCTTGGCTC.......................................................................................................................................................221.000.00--------------1.00-------------------------------------------
.....................................................................................................................................AGCTGGGAGAGGGCTCTTTAA................................................................................................2111.001.00----------------------------------------------1.00-----------
.................................................................................................................................GAAAAGCTGGGAGAGGGCGT.....................................................................................................201.000.00-------------1.00--------------------------------------------
..................................................................................................................................AAAAGCTGGGAGAGGGCGAC....................................................................................................2011.002.00--------------------------------------------1.00-------------
...........TGCGGTTTGCAGAGCTTGCACAAATCTACGC................................................................................................................................................................................................................3111.001.00----------1.00-----------------------------------------------
.....ACGACATGCGGTTTGCAG...................................................................................................................................................................................................................................1811.001.00--------------------------------------------------1.00-------
...................................................................................................................................AAAGCTGGGAGAGGGCGAT....................................................................................................191.000.00---------------------------------1.00------------------------
...........................TGCACAAATCTACGCACAGCTGA........................................................................................................................................................................................................231.000.00-1.00--------------------------------------------------------
...........TGCGGTTTGCAGAGCTTGCACAAATCTA...................................................................................................................................................................................................................2811.001.00-----------------------------------1.00----------------------
........................................................................................................................................TGGGAGAGGGCTCTTTACTCC.............................................................................................211.000.00-1.00--------------------------------------------------------
.....................AGAGCTTGCACAAAT......................................................................................................................................................................................................................1570.570.57-------------------------------------------------------0.57--
.................................................................................................................................................................................CCCCCATGAGGCTTCC.........................................................1640.250.25--------------------------------------------------------0.25-
..............GGTTTGCAGAGCTTGC............................................................................................................................................................................................................................1650.200.20---------------------------------------------------------0.20

Antisense strand
CTGCTACGACATGCGGTTTGCAGAGCTTGCACAAATCTACGCACAGAGAGGTGAGGCAGTGTAATAGCTGTGTTATGTGGGTGCTTGGAGGCTTGGTTCTAGGCTGGTCTATGTGGGATCCTTAGTCAAGAAAAGCTGGGAGAGGGCTCTTTAATTTCTCCATCTTCAGCCCTTTCACCCCCATGAGGCTTCCCAGACTTTTGCTGTGTATGGATGACAGGGTTTTTGGGGGGTTGTAATTAAACACATC
....................................................................................................................................((((((((((((((((...................))))))))).)).......)))))...........................................................
.............................................................................................................................126..............................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787SRR189782TAX577744(Rovira)
total RNA. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189786SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343334SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.................................................................AGCTGTGTTATGTGGGTCTTT.................................................................................................................................................................... 211.000.00---------------------------------------------------1.00------
.........GCGTAGATTTGTGCAAGCTCTGCAAACCGCATG................................................................................................................................................................................................................ 3311.001.00-------------1.00--------------------------------------------
..............................................................................................................................................................CATGGGGGTGAAAGGGCTGAAGATGGA................................................................. 2711.001.00------------------------------1.00---------------------------