ID: uc011bha.1_intron_2_0_chr3_100058780_f.5p
GENE: NIT2(3)
chr3:100058730-100058979+


(1)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(3)
BREAST
(12)
CELL-LINE
(1)
CERVIX
(3)
HEART
(1)
KIDNEY
(3)
LIVER
(6)
OTHER
(3)
SKIN
(1)
TESTES

Sense strand
ACAGAAGCTTTCTGAAGTAGCAAAGGAATGCAGCATATATCTCATTGGAGGTAACTTCCTACCCACAAGGTATAATGACCTAAACATTAGAAACATCTGAATGAGTCAGGTGTGGTGGCGTGCGCCTGTATTCCCTACTTGGGAAGCTTCAGCTTGGGAAGCTGAAGCAGAGAGTTTCTTTTTCTTATTTATTTATTTTTTTTGAGGTGAGGTCTTGCTTTGTCACCCGTGCTAGAGTACAGTGGTGTGA
....................................................................................................................................................((((((.....))))))...((((((.....)))))).................................................................
....................................................................................................................................................149........................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343336SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR343337SRR189785SRR189782SRR553576(SRX182782)
source: Testis. (testes)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040039(GSM532924)
G531T. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
TAX577740(Rovira)
total RNA. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577744(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.......................................................................................................................................................................................CTTATTTATTTATTTTTTCAT..............................................2114.000.00-8.003.002.001.00---------------------------------
......................................................................................................................................................................................TCTTATTTATTTATTTTTTATTG.............................................2310.000.00-4.00-6.00----------------------------------
.......................................................................................................................................................................................................................................CTAGAGTACAGTGGTGTAGGG216.000.00--------6.00-----------------------------
..................................................................................................................................................................................TTTTTCTTATTTATTTATTTTTTTTTTTG...........................................294.000.00----3.00--1.00------------------------------
......................AAGGAATGCAGCATATATCT................................................................................................................................................................................................................2013.003.00----------------1.00------1.00--------1.00-----
...................................................................................................................................................................................TTTTCTTATTTATTTATTTTAAG................................................233.000.00---2.001.00---------------------------------
..............................................................................................................................................................................TTTCTTTTTCTTATTTATTTATTTG...................................................253.000.00-2.00-1.00----------------------------------
.....................................................................................................................................................................................TTCTTATTTATTTATTTTTATTG..............................................233.000.00--3.00-----------------------------------
..............................................................................................................................................................AAGCTGAAGCAGAGAGTTTCTTTT....................................................................2413.003.00-------3.00------------------------------
......................................................................................................................................................................................TCTTATTTATTTATTTTTTTTTATG...........................................252.000.00----2.00---------------------------------
..........TCTGAAGTAGCAAAGGAATGCAGCATA.....................................................................................................................................................................................................................2712.002.00------------2.00-------------------------
..................................................................................................................................................................................TTTTTCTTATTTATTTACAAG...................................................212.000.00----------1.00---------1.00-----------------
.....................................................................................................................................................................................TTCTTATTTATTTATTTTTTTTTTTG...........................................262.000.00-1.001.00-----------------------------------
..................................................................................................................................................................................TTTTTCTTATTTATTTATTTTTTTTCTTG...........................................292.000.00--1.00-1.00---------------------------------
......................................................................................................................................................................................TCTTATTTATTTATTTTAAG................................................202.000.00--1.001.00----------------------------------
.............GAAGTAGCAAAGGAATGCAG.........................................................................................................................................................................................................................2012.002.00-----------------2.00--------------------
.....................................................................................................................................................................................TTCTTATTTATTTATTTTTTTTGCCGG..........................................271.000.001.00-------------------------------------
.....................................................................................................................................................................................TTCTTATTTATTTATTTTTTTTGAGACGG........................................291.000.00------1.00-------------------------------
..............AAGTAGCAAAGGAATGCAGCATA.....................................................................................................................................................................................................................2311.001.00----------------------------------1.00---
..............................................................................................................................................................AAGCTGAAGCAGAGAGTTTCT.......................................................................2111.001.00-------1.00------------------------------
..............................................................................................................................................................AAGCTGAAGCAGAGAGTTTCTT......................................................................2211.001.00-------1.00------------------------------
....................................................................................................................................................................................TTTCTTATTTATTTATTTTTCG................................................221.000.00--1.00-----------------------------------
....................................................................................................................................................................................TTTCTTATTTATTTATTTTTTTTTCG............................................261.000.00----1.00---------------------------------
.........................................................................................................................................................................................TATTTATTTATTTTTTTTGACG...........................................221.000.00---1.00----------------------------------
..........TCTGAAGTAGCAAAGGAATGCAGCAT......................................................................................................................................................................................................................2611.001.00------------1.00-------------------------
.........................................................................................................................................................TTGGGAAGCTGAAGCAG................................................................................1701.001.00-------------1.00------------------------
................................................................................................................................................................................TCTTTTTCTTATTTATTAAAG.....................................................211.000.00---1.00----------------------------------
.......................AGGAATGCAGCATATATCTCA..............................................................................................................................................................................................................2111.001.00-----------------------------1.00--------
...................................................................................................................................................................................TTTTCTTATTTATTTATTTTTTTTAACG...........................................281.000.00----1.00---------------------------------
...............................................................................................................................................................................TTCTTTTTCTTATTTATTTATTTTTTCTG..............................................291.000.00----1.00---------------------------------
...........................................................................................................AGGTGTGGTGGCGTGCGCCGTAG........................................................................................................................231.000.001.00-------------------------------------
.........TTCTGAAGTAGCAAAGGAATGCA..........................................................................................................................................................................................................................2311.001.00----------------1.00---------------------
......................................................................................................................................................................................TCTTATTTATTTATTTTTATTG..............................................221.000.00-1.00------------------------------------
..................................................................................................................................................................................TTTTTCTTATTTATTTACAAT...................................................211.000.00----------1.00---------------------------
..........TCTGAAGTAGCAAAGGAATGCAG.........................................................................................................................................................................................................................2311.001.00----------------------------1.00---------
......................................................................................................................................................................................TCTTATTTATTTATTTTTTTTATG............................................241.000.00----1.00---------------------------------
.........TTCTGAAGTAGCAAAGGAATGCAGC........................................................................................................................................................................................................................2511.001.00-------------------------1.00------------
..................................................................................................................................................................................TTTTTCTTATTTATTTATATAG..................................................221.000.00-1.00------------------------------------
..............................................................................................................................................................................TTTCTTTTTCTTATTTATCTAT......................................................221.000.00----1.00---------------------------------
.......CTTTCTGAAGTAGCAAAGGAATGCAGCATATA...................................................................................................................................................................................................................3211.001.00----------------------1.00---------------
.....................................................................................................................................................................................TTCTTATTTATTTATTTTAAG................................................211.000.00-1.00------------------------------------
.................................................................................................................................................................................CTTTTTCTTATTTATTTATTTACTT................................................251.000.00----1.00---------------------------------
...................................................................................................................................................................................TTTTCTTATTTATTTATTTTAAA................................................231.000.00--1.00-----------------------------------
...................................................................................................................................................................................TTTTCTTATTTATTTATTTTTTTACCT............................................271.000.00----1.00---------------------------------
......................AAGGAATGCAGCATATATCTCA..............................................................................................................................................................................................................2211.001.00---------------------------------1.00----
.......................AGGAATGCAGCATATATCT................................................................................................................................................................................................................1911.001.00------------------1.00-------------------
....................CAAAGGAATGCAGCATATATCTTA..............................................................................................................................................................................................................241.000.00------------------------------1.00-------
.........TTCTGAAGTAGCAAAGGAATG............................................................................................................................................................................................................................2111.001.00--------------1.00-----------------------
.......................................................................................................................................................................................CTTATTTATTTATTTTTTCGG..............................................211.000.00-1.00------------------------------------
.....................AAAGGAATGCAGCATATA...................................................................................................................................................................................................................1811.001.00-------------------------------1.00------
...............................................................................................................................................................................TTCTTTTTCTTATTTATTTATTTTTTTTTCAG...........................................321.000.00--1.00-----------------------------------
....................CAAAGGAATGCAGCATATA...................................................................................................................................................................................................................1911.001.00--------------1.00-----------------------
....................................................................................................................................................................................................................TCTTGCTTTGTCACCCGTGCTGGAG.............251.000.001.00-------------------------------------
..................................................................................................................GTGGCGTGCGCCTGTGG.......................................................................................................................171.000.00-------------1.00------------------------
...........................................................................................................................................................GGGAAGCTGAAGCAGAGGT............................................................................191.000.00---------------1.00----------------------
....................................................................................................................................................................................TTTCTTATTTATTTATTTTTTTGGCA............................................261.000.001.00-------------------------------------
.........TTCTGAAGTAGCAAAGGAATGCAG.........................................................................................................................................................................................................................2411.001.00---------------------------1.00----------
.................................................................................................................................................................................CTTTTTCTTATTTATTTATTTTTTTTG..............................................2711.001.00--1.00-----------------------------------
...................................................................................................................................................................................TTTTCTTATTTATTTATTTTATG................................................231.000.00--1.00-----------------------------------
......................................................................................................................................................................................TCTTATTTATTTATTTTTTATAG.............................................231.000.00---1.00----------------------------------
..................................................................................................................................................................................................ATTTTTTTTGAGGTGAAGTC....................................201.000.00---------------1.00----------------------
......................................................................................................................................................................................TCTTATTTATTTATTTTCTAG...............................................211.000.00--1.00-----------------------------------
..............................................................................................................................................................AAGCTGAAGCAGAGAGTTTCTTCT....................................................................2411.001.00-------1.00------------------------------
................................................................................................................................................................................TCTTTTTCTTATTTATTTATTTTTTTTTCAG...........................................3120.500.50--0.50-----------------------------------
................................................................................................................................................................................TCTTTTTCTTATTTATTTATTTTTTTT...............................................2720.500.50---0.50----------------------------------
..................................ATATATCTCATTGGAG........................................................................................................................................................................................................1620.500.50------------------------------------0.50-
....................................................................................................................................................................................TTTCTTATTTATTTATTTTTTTTG..............................................2440.250.25--0.25-----------------------------------

Antisense strand
ACAGAAGCTTTCTGAAGTAGCAAAGGAATGCAGCATATATCTCATTGGAGGTAACTTCCTACCCACAAGGTATAATGACCTAAACATTAGAAACATCTGAATGAGTCAGGTGTGGTGGCGTGCGCCTGTATTCCCTACTTGGGAAGCTTCAGCTTGGGAAGCTGAAGCAGAGAGTTTCTTTTTCTTATTTATTTATTTTTTTTGAGGTGAGGTCTTGCTTTGTCACCCGTGCTAGAGTACAGTGGTGTGA
....................................................................................................................................................((((((.....))))))...((((((.....)))))).................................................................
....................................................................................................................................................149........................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343336SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR343337SRR189785SRR189782SRR553576(SRX182782)
source: Testis. (testes)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR040039(GSM532924)
G531T. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
TAX577740(Rovira)
total RNA. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577744(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................................................................TTCAGCTTGGGAAGCTGTC.................................................................................... 199.000.00-----7.00---2.00----------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGTGGC...................................................................................................................... 247.000.005.00-----2.00-------------------------------
....................................................................................................................................................TCAGCTTGGGAAGCTTGAC................................................................................... 194.000.00-----2.00---2.00----------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGTGGCT..................................................................................................................... 254.000.002.00-----2.00-------------------------------
....................................................................................................................................................TCAGCTTGGGAAGCTGTGAC.................................................................................. 204.000.00-----3.00---1.00----------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGTAGCC..................................................................................................................... 253.000.003.00-------------------------------------
..........................................................................................................CAGGTGTGGTGGCGTGCGCCTGCA........................................................................................................................ 243.000.003.00-------------------------------------
..........................................................................................................CAGGTGTGGTGGCGTGCGCCTGTGG....................................................................................................................... 253.000.001.00-----2.00-------------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGCGGG...................................................................................................................... 242.000.002.00-------------------------------------
..........................................................................................AAACATCTGAATGAGTACAA............................................................................................................................................ 202.000.00-----------2.00--------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGTAGGC..................................................................................................................... 252.000.002.00-------------------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGTAGGCT.................................................................................................................... 262.000.002.00-------------------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGTCGCC..................................................................................................................... 252.000.002.00-------------------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGTACGCC.................................................................................................................... 262.000.002.00-------------------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGTGGCC..................................................................................................................... 252.000.002.00-------------------------------------
..........................................................................................................CAGGTGTGGTGGCGTGCGCCTGTGCA...................................................................................................................... 262.000.002.00-------------------------------------
..........................................................................................................CAGGTGTGGTGGCGTGCGCCTGTC........................................................................................................................ 241.000.001.00-------------------------------------
..........................................................................................................CAGGTGTGGTGGCGTGCGCCTGTAGG...................................................................................................................... 261.000.001.00-------------------------------------
......................................................................................................................................................................................................................................GCTAGAGTACAGTGGGC... 171.000.00-----------------------------------1.00--
..........................................................................................................CAGGTGTGGTGGCGTGCGCCTGTGCG...................................................................................................................... 261.000.001.00-------------------------------------
..........................................................................................................CAGGTGTGGTGGCGTGCGCCTCC......................................................................................................................... 231.000.001.00-------------------------------------
..................................................................................................................................................CTTCAGCTTGGGAAGTCGT..................................................................................... 191.000.00----------1.00---------------------------
.............................................................................................................GTGTGGTGGCGTGCGCCTGTTCAA..................................................................................................................... 241.000.001.00-------------------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGTAAGAC.................................................................................................................... 261.000.001.00-------------------------------------
...................................................TAACTTCCTACCCACTAG..................................................................................................................................................................................... 181.000.00-----------1.00--------------------------
........................................................................................................................TGCGCCTGTATTCCCTG................................................................................................................. 171.000.00------------------------1.00-------------
...................................................................................................................................................TTCAGCTTGGGAAGCTACG.................................................................................... 191.000.00-------------------1.00------------------
..........................................................................................................CAGGTGTGGTGGCGTGCGCCTGTATTGC.................................................................................................................... 281.000.00------1.00-------------------------------
....................................................................................................................................................TCAGCTTGGGAAGCTGAGAAC................................................................................. 211.000.00----------1.00---------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTCGCC....................................................................................................................... 231.000.001.00-------------------------------------
.............................................................................................................GTGTGGTGGCGTGCGCCTGTTGGG..................................................................................................................... 241.000.001.00-------------------------------------
..........................................................................................................CAGGTGTGGTGGCGTGCGCCTGTGCCG..................................................................................................................... 271.000.001.00-------------------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGTACGC..................................................................................................................... 251.000.001.00-------------------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGGCT....................................................................................................................... 231.000.001.00-------------------------------------
..........................................................................................................CAGGTGTGGTGGCGTGCGCCTGTCC....................................................................................................................... 251.000.001.00-------------------------------------
...........................................................................................................AGGTGTGGTGGCGTGCGCCTGTAAA...................................................................................................................... 251.000.001.00-------------------------------------
............................................................................................................GGTGTGGTGGCGTGCGCCTGTAGAC..................................................................................................................... 251.000.001.00-------------------------------------
...........................................................................................................................................................................GAGTTTCTTTTTCTTGGCC............................................................ 191.000.00--------------------------1.00-----------
.........................................................CCTACCCACAAGGTAGGG............................................................................................................................................................................... 181.000.00---------------------1.00----------------
......................................................................................................................................................................AAAAGAAACTCTCTGC.................................................................... 1670.140.14-------------------------------------0.14