ID: uc011bgq.1_intron_1_0_chr3_97562106_f.3p
GENE: AK296966(2)
chr3:97582861-97583110+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(6)
B-CELL 		(3)
BRAIN 		(28)
BREAST 		(27)
CELL-LINE 		(18)
CERVIX 		(4)
FIBROBLAST 		(8)
HEART 		(4)
HELA 		(11)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(18)
SKIN 		(4)
UTERUS 		(2)
XRN.ip

Sense strand
GACATTTACCGTATAGCTTTTTAAAGGTCATGCTTACTGTGCTCTTCAGTAGATTGTGAACTGCCCAAAGGAACAGAAGCCATTAGTCTTATTCACAAATGTATCCCTGGTGTCTACACAGAATCTGTTTTATAATAGCTTATCAGTCTGTTTCATTATTTAAATAATGATGCTTATGATTGTCTATTTTGTTTTCAAAGATTCGCCAAAGTGAGGACAAAAGGAACCATGCTGAGAAGCCAGTCACTCT
.....................................................................................................................................(((((...((((....((.(((((((....))))))).))...))))...)))))..............................................................
..................................................................................................................................131.........................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR040010(GSM532895)
G529N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040018(GSM532903)
G701N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577580(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR040012(GSM532897)
G648N. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040030(GSM532915)
G013N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577588(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191471(GSM715581)
119genomic small RNA (size selected RNA from . (breast)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		GSM532875(GSM532875)
G547N. (cervix)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR029126(GSM416755)
143B. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................TAGCTTATCAGTCTGTTGTTG..............................................................................................211294.004.0036.0017.0027.0015.0017.0017.0023.00-23.00--4.0011.009.00-12.008.003.003.006.007.003.005.003.003.005.00-1.002.005.00-4.00-2.002.00---1.001.001.00-2.00--2.002.00-1.001.001.00-------2.00-1.001.00------1.00---1.00-----1.00-----------1.00-------1.00----------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATGT................................................................................................192120.004.500.503.001.501.503.002.501.5016.001.0010.5013.0013.002.001.5010.00----0.50-1.501.001.000.50-0.50---2.50-0.50-1.001.000.500.50-0.501.002.00-1.00---0.50-0.501.001.500.500.500.500.50---0.50-0.50-0.50-1.000.50--1.00----0.500.500.50-----0.50--1.00------0.50------0.500.500.501.00-0.500.500.500.50----0.500.50-0.50-0.500.500.50-0.500.50-0.50-0.50---0.500.500.50
.......................................................................................................................................TAGCTTATCAGTCTGATG.................................................................................................18279.004.50-4.500.501.503.504.003.003.501.506.006.501.002.00-2.000.50--1.000.500.501.000.50---7.001.00--0.50-1.00-0.501.003.00-0.501.00-0.50-0.50----0.500.500.50-1.000.501.50----0.500.50----0.50-1.50------0.500.500.50----1.000.50-----0.50--1.00-0.500.50----0.500.50-------0.50-0.500.50--0.50-0.50---0.50--0.50-0.50-0.50-0.50---
.......................................................................................................................................TAGCTTATCAGTCTGTTGTT...............................................................................................20139.004.00-1.001.001.00-1.001.002.001.002.001.006.003.00-1.00-1.005.002.001.001.001.001.001.00-1.00------------2.00------------1.00------------1.00--------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTTGA.............................................................................................2227.000.001.006.001.002.002.002.002.00------2.00-3.001.00--1.00---1.00---1.00----------------------------1.00---------------------------1.00------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGAT..................................................................................................17227.004.50-1.00-1.001.00--6.00-5.003.50---4.50-------0.50-------1.50------------1.00---0.50---------------0.500.50------------------------------------0.50-------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGTTT..............................................................................................21125.004.001.001.004.005.003.005.00-------2.00---1.00---------1.00-----1.00-------------------1.00-------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTTG..............................................................................................2116.000.002.00-2.002.001.002.00-----1.00-2.00----1.00----1.00-1.00---1.00-------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGGTG..............................................................................................21114.004.002.001.002.00-1.001.001.00--------1.001.00-1.00-1.00------------------------1.001.00--------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTTTT.............................................................................................2214.000.001.003.001.002.001.00--------1.00--2.00------1.00------------------1.00-1.00----------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTCTTG..............................................................................................21113.004.005.00-1.002.002.00-----------1.001.00-------------------------------1.00-----------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTTGT.............................................................................................2211.000.001.003.00-1.001.002.00----------1.00----1.00--------------------------1.00------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTTTA.............................................................................................2211.000.00-5.00-1.00---------2.00------1.00--------------1.00--------1.00----------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGT................................................................................................19110.004.00-2.00-1.001.00-1.001.00-------1.00-1.001.00-------------------------------------1.00----------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTTT..............................................................................................216.000.00-2.001.00-------------1.002.00-------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGTTA..............................................................................................2115.004.00--1.00-----2.00-------1.00--1.00-----------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTG....................................................................................................1524.504.50----------------------------0.50--------2.00--1.00----------------------------------------------------0.500.50--------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATGC................................................................................................1924.504.50---------2.500.50---1.00-------------------------------------------------------------------------0.50--------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATT.................................................................................................1824.504.50-0.500.50----0.500.500.501.00---0.50--------------------------------------------0.50-------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATGG................................................................................................1924.004.50---------0.50----0.50-------0.50-0.50---0.50-0.50----0.50--------------------------------------------------------------------------------------------0.50----
.......................................................................................................................................TAGCTTATCAGTCTGTTGTGG..............................................................................................2114.004.00-1.001.00--1.00------1.00------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGATG..............................................................................................2114.004.00------1.00-----------1.001.00--1.00--------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATTT................................................................................................1924.004.50-------0.50-0.50-0.50-0.50--------------------0.50------0.50----------0.50----------------0.50---------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTT..................................................................................................1714.004.00-----1.00-1.00-1.00----1.00----------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATGA................................................................................................1923.504.50----------------------------0.50-----------0.50--0.50------------------0.500.50---------------0.50------------0.50----------------------------------------
.....................................................................................................................................AATAGCTTATCAGTCTGTTGTTG..............................................................................................233.000.00--1.00---------1.00-----------1.00------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGCTG..............................................................................................2113.004.001.00-----------------1.00--------------------1.00---------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTG.................................................................................................1813.004.00--1.00----------------------------------1.00-----------------------------------1.00-----------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGTTC..............................................................................................2113.004.002.00-------1.00----------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................AGCTTATCAGTCTGTTGTTG..............................................................................................203.000.00-------------------------1.00-1.00-------------------------------------------------------1.00-------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTT...............................................................................................203.000.00-------1.00-2.00---------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGAGG.................................................................................................1822.504.50----------0.50-0.501.00-------0.50---------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGCTG.................................................................................................1822.504.50----0.50-0.50-----0.50-------------0.50--------0.50-------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGGTGT................................................................................................1922.004.50---0.500.50-------------------0.50-----------------------0.50------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTCGT................................................................................................192.000.001.00------1.00-----------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTGTGT.............................................................................................222.000.00-1.00---------------------1.00-------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTA.................................................................................................1812.004.00--------1.00--1.00-------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATA.................................................................................................1822.004.50--------0.50-----------------------0.50--------0.50-------------0.50-----------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGTGT..............................................................................................2112.004.001.00---1.00--------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGTCG..............................................................................................2112.004.00------------------1.00------------------------------------------------------------------------------1.00-----------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTTTC.............................................................................................222.000.00---1.00--------------------------------------------------------------------------------------------1.00------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGA................................................................................................1912.004.00---1.00--1.00------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGGT...............................................................................................2012.004.00---1.00------1.00--------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTTGG.............................................................................................222.000.00-1.00----1.00------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGAC...............................................................................................2012.004.00---------------1.00------------1.00--------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTT................................................................................................192.000.00-----1.00---------------------1.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTATTG..............................................................................................2112.004.001.00-----------------------1.00------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGGTT..............................................................................................2112.004.001.00-----------------1.00------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGCTGT................................................................................................1921.504.50--------0.50--1.00-------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TCGCCAAAGTGAGGACAAAAGGAACCATGC..................3011.001.00-----------------------------------------------------------------------1.00-------------------------------------------------------------
........................................................................................................................................AGCTTATCAGTCTGTTTTTGA.............................................................................................211.000.00--------------------------------------------1.00----------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTCTT...............................................................................................2011.004.00---------------------------------1.00---------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTCGA................................................................................................191.000.00----------------------------1.00--------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................GTGAGGACAAAAGGAACCATGCTGAGT.............271.000.00-----------------------------------------------1.00-------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTGGA.............................................................................................221.000.00---1.00---------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................AATAGCTTATCAGTCTGTTGTTT..............................................................................................231.000.00---1.00---------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................AAAGGAACCATGCTGAGAAGCCA........2311.001.00--------------------------------------------------------------------------------1.00----------------------------------------------------
....................................................................................................................................................................................................................GAGGACAAAAGGAACCATGCTGAGAAGCCAGT......3211.001.00--------------------------------------------------------------------------------------1.00----------------------------------------------
...............................................AGTAGATTGTGAACTCTG.........................................................................................................................................................................................181.000.00-----------------------------------------------------------------------------1.00-------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTTGC.............................................................................................221.000.00-----1.00-------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................CGCCAAAGTGAGGACAAAAGGAA........................2311.001.00---------------------------------------------------------------------------------------1.00---------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTTGTT.............................................................................................221.000.00---1.00---------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTGG.................................................................................................181.000.00-----1.00-------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTCTGCG............................................................................................231.000.00---1.00---------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTGTTA...............................................................................................201.000.00------------1.00------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTCGTG..............................................................................................2111.004.00----------------1.00--------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................AATGATGCTTATGATTGTCTATTTTGTTTT.......................................................3011.001.00-------------------------------------------------------------------------------------------------------1.00-----------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATTG................................................................................................1921.004.50----1.00--------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTGTTT.............................................................................................221.000.001.00------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTGTGA.............................................................................................221.000.00------------------------1.00------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGAAA.................................................................................................1821.004.50--------0.50----------------------------------------------------------------------0.50-----------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGCTC..............................................................................................2111.004.00------1.00------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................AGCTTATCAGTCTGTTTTTTT.............................................................................................211.000.00-1.00-----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGTC...............................................................................................2011.004.00----------1.00--------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................TGATGCTTATGATTGTATAA...............................................................201.000.00----------------------------1.00--------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTGGTT...............................................................................................201.000.00----1.00--------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGCTT..............................................................................................2111.004.00---------------1.00---------------------------------------------------------------------------------------------------------------------
....................................................................AGGAACAGAAGCCATGAC....................................................................................................................................................................181.000.00-----------------------------------------------1.00-------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTGA.................................................................................................181.000.00---------------------1.00---------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTGTAG..............................................................................................2111.004.00----1.00--------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................GCTTATCAGTCTGTTGATG..............................................................................................191.000.00------1.00------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................AAGGAACCATGCTGAGAAGCC.........2111.001.00-----------------------------------------------------------------------------------------1.00-------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTATC..............................................................................................211.000.00---------------------1.00---------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTCTGTC............................................................................................231.000.00-1.00-----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTTTGTG..............................................................................................211.000.00---1.00---------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................GTGAGGACAAAAGGAACCATGCTGAGAAGCCA........3211.001.00-------------------------------------------------------1.00-----------------------------------------------------------------------------
................................................................................................................................................AGTCTGTTTCATTATCCTC.......................................................................................191.000.00---------------------------------------------------------1.00---------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGTCTC................................................................................................191.000.00------1.00------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATC.................................................................................................1821.004.50-----------------0.50--------------------------------------------------0.50----------------------------------------------------------------
......................................................................................................................................ATAGCTTATCAGTCTGTTGTTG..............................................................................................221.000.00----1.00--------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGCCGT................................................................................................1920.504.50--------------0.50----------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGAGGG................................................................................................1920.504.50-0.50-----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGGGG.................................................................................................1820.504.50------------0.50------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGACG.................................................................................................1820.504.50----------0.50--------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGGAGC................................................................................................1920.504.50-0.50-----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATCT................................................................................................1920.504.50----------0.50--------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGGTAT................................................................................................1920.504.50------------------------0.50------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGGTG.................................................................................................1820.504.50----0.50--------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGGGT.................................................................................................1820.504.50--------------------0.50----------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATAT................................................................................................1920.504.50-------0.50-----------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGGTTT................................................................................................1920.504.50--0.50----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGAG..................................................................................................1720.504.50----0.50--------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGGT..................................................................................................1720.504.50-------0.50-----------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGATCC................................................................................................1920.504.50-------------0.50-----------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGAGTT................................................................................................1920.504.50----------------------0.50--------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGCAT.................................................................................................1820.504.50-------------------------------------------------------------------------------------------------------------0.50-----------------------
.......................................................................................................................................TAGCTTATCAGTCTGAGGC................................................................................................1920.504.50---------------------------0.50---------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGAGGT................................................................................................1920.504.50---0.50---------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TAGCTTATCAGTCTGAGCT................................................................................................1920.504.50-----------0.50-------------------------------------------------------------------------------------------------------------------------

Antisense strand
GACATTTACCGTATAGCTTTTTAAAGGTCATGCTTACTGTGCTCTTCAGTAGATTGTGAACTGCCCAAAGGAACAGAAGCCATTAGTCTTATTCACAAATGTATCCCTGGTGTCTACACAGAATCTGTTTTATAATAGCTTATCAGTCTGTTTCATTATTTAAATAATGATGCTTATGATTGTCTATTTTGTTTTCAAAGATTCGCCAAAGTGAGGACAAAAGGAACCATGCTGAGAAGCCAGTCACTCT
.....................................................................................................................................(((((...((((....((.(((((((....))))))).))...))))...)))))..............................................................
..................................................................................................................................131.........................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR040010(GSM532895)
G529N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040018(GSM532903)
G701N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577580(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR040012(GSM532897)
G648N. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040030(GSM532915)
G013N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR040031(GSM532916)
G013T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577588(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191471(GSM715581)
119genomic small RNA (size selected RNA from . (breast)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		GSM532875(GSM532875)
G547N. (cervix)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR029126(GSM416755)
143B. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................................................................GACAAAAGGAACCATGCT................. 183.000.00--------------------------------2.00--------------------------------------------------------------1.00-------------------------------------
........................................................................................................CCCTGGTGTCTACACAGAATCA............................................................................................................................ 221.000.00---------------------------------------------------------1.00---------------------------------------------------------------------------
.......................................................................................................................................................................................................................GACAAAAGGAACCATG................... 161.000.00--------------------------------------------------------------1.00----------------------------------------------------------------------
.......................................................................................................................................................................................................................GACAAAAGGAACCATGCTC................ 191.000.00------------------------------------------------------------------1.00------------------------------------------------------------------
.................................................................CAAAGGAACAGAAGCTAA....................................................................................................................................................................... 181.000.00----------------------------------------------------------------------1.00--------------------------------------------------------------