| (2) B-CELL | (1) BREAST | (9) CELL-LINE | (4) OTHER |
| CAAAAATAAAATAAAATATGCTTAATACAGTATTTTATCAATTCTAAATGCAGTTTTTCACAATTTTTATATCACTGAAATTAGGATGCATCTAAAATCTGCATTGTCTTAGGTTTAATGAAATATGATAGGTCAAGATTTTTGTGTTGATTCTTATTTGTGGATGACATGAGTGTAACTTTTTTTTTTTTTTTTTAAAGATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATTGGTAACAT ...............................................................................................((((.((((.(((((.((..((...........))..)))))))....)))).))))..((((..((.....))..))))........................................................................... ...........................................................................................92..........................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189785 | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR189786 | TAX577744(Rovira) total RNA. (breast) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR033730(GSM497075) Lymphoblastic (ALL411). (B cell) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTAAACCAG............................................... | 26 | 11.00 | 0.00 | 6.00 | 2.00 | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTATTTT................................................. | 24 | 10.00 | 0.00 | 3.00 | 2.00 | 3.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AACTTTTTTTTTTTTTTTTTATTG.................................................. | 24 | 7.00 | 0.00 | 4.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AACTTTTTTTTTTTTTTTTTATCAG................................................. | 25 | 6.00 | 0.00 | 1.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AACTTTTTTTTTTTTTTTTTAACG.................................................. | 24 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AACTTTTTTTTTTTTTTTTTAACGG................................................. | 25 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTATAAG................................................. | 24 | 3.00 | 0.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AACTTTTTTTTTTTTTTTTTAAAAG................................................. | 25 | 2.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTAACCG................................................. | 24 | 2.00 | 0.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTATAAT................................................. | 24 | 2.00 | 0.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTATTCG................................................. | 24 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AACTTTTTTTTTTTTTTTTTAACGC................................................. | 25 | 2.00 | 0.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTAAACTAT............................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................TACCTCTTCCTCCCAAAAAAT............. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .............................................................................................................................................................................TGTAACTTTTTTTTTTTTTGGTT...................................................... | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AACTTTTTTTTTTTTTTTTTAACGT................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTAACCGG................................................ | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTAAACGGG............................................... | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AACTTTTTTTTTTTTTTTTTATTTT................................................. | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................ATCTGCATTGTCTTATCGT....................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTAAACACG............................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTATTCA................................................. | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTAAACGT................................................ | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................TGTAACTTTTTTTTTTTTTTTTATT.................................................... | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTATCG.................................................. | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTAACCCG................................................ | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................GATGACATGAGTGTAACG...................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................CTACCTCTTCCTCCCCACG................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................AGATTGCAGGCCTAAGTA.................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTAAACCGG............................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................CCTAAGTCTACCTCTTCCTCCCAAAAAATTG........... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................AACTTTTTTTTTTTTTTTTTATAAA................................................. | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTAAAGAAGGG............................................. | 28 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTATTAC................................................. | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTATTGC................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................ATTGCAGGCCTAAGTCTACCTCCTC......................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .............................................................................................................................................................................TGTAACTTTTTTTTTTTTTTTTTCGAG.................................................. | 27 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................TTTATCAATTCTAAATCCCT..................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTATCAC................................................. | 24 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTATCCG................................................. | 24 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTAAAGTGTA.............................................. | 27 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TAACTTTTTTTTTTTTTTTTTATT................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................AGTGTAACTTTTTTTTTTTGAG......................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................AACTTTTTTTTTTTTTTTTTATCAC................................................. | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................AAATGCAGTTTTTCACATCG......................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................CTAAGTCTACCTCTTCCTCCCAAAAAATTG........... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ................................................................................................................................................................................AACTTTTTTTTTTTTTTTTTAAAATAG............................................... | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTATCAA................................................. | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TAACTTTTTTTTTTTTTTTTTAAAG.................................................. | 25 | 9 | 0.11 | 0.11 | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CAAAAATAAAATAAAATATGCTTAATACAGTATTTTATCAATTCTAAATGCAGTTTTTCACAATTTTTATATCACTGAAATTAGGATGCATCTAAAATCTGCATTGTCTTAGGTTTAATGAAATATGATAGGTCAAGATTTTTGTGTTGATTCTTATTTGTGGATGACATGAGTGTAACTTTTTTTTTTTTTTTTTAAAGATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATTGGTAACAT ...............................................................................................((((.((((.(((((.((..((...........))..)))))))....)))).))))..((((..((.....))..))))........................................................................... ...........................................................................................92..........................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189785 | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR189786 | TAX577744(Rovira) total RNA. (breast) | SRR037939(GSM510477) 293cand5_rep1. (cell line) | SRR033730(GSM497075) Lymphoblastic (ALL411). (B cell) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .AAAAATAAAATAAAATATGTTTG.................................................................................................................................................................................................................................. | 23 | 6.00 | 0.00 | 3.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .............AAATATGCTTAATACAGG........................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| .........................................................................................................................................ATTTTTGTGTTGATTATTG.............................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..AAAATAAAATAAAATATGCTTG.................................................................................................................................................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................CTACCTCTTCCTCCCAGCCC............... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |