ID: uc011bey.1_intron_1_0_chr3_57264796_f.5p
GENE: APPL1(2)
chr3:57264746-57264995+


(1)
B-CELL 		(11)
CELL-LINE 		(1)
HEART 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(3)
SKIN

Sense strand
GAGTCCAAGAAGCAGAGCAGCAAAGAATATGAAGACTTTTAAAGCTCATGGTAAGTTTTTTGTTTTTTTTTTGAGACAGAGTCTCACTGTCACGTAGGTTGGATTGCAGTGGCACAGCCATAGCTCTGAAACCTCAAACTCCTGGGCACACGCCACCAAGCTCAGCTAATTTTATTTTATTTTATTTTTATTTTTTGGAGATGGAGTTTCGCTCTTGTCGCCTAGGCTAGAGTGCAGTGGCATGATCTTG
..................................................((.((..(((((((((......))))))))).)).))........(((((.....((.(((((...))))).)).....)))))....((((..(((....)))....(((...))).............................))))..................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
.......................................................................................................................................................................AATTTTATTTTATTTTATTTTCTTG..........................................................2541.000.0014.0015.00-7.005.00-----------------
........................................................................................................................................................................ATTTTATTTTATTTTATTTTTATTTCTTG.....................................................2910.000.004.003.00-3.00------------------
.........................................................................................................................................................................TTTTATTTTATTTTATTTTTATTTTCAG.....................................................283.000.00---2.00--1.00---------------
.....................................................................................................................................................................CTAATTTTATTTTATTTTATTTTTATTTTTTG.....................................................3213.003.002.00---1.00-----------------
.........................................................................................................................................................................TTTTATTTTATTTTATTTTTATTTCTAG.....................................................283.000.00---2.001.00-----------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTTTCTTT..........................................................253.000.001.001.00-1.00------------------
.......................................................................................................................................................................AATTTTATTTTATTTTATATTG.............................................................222.000.002.00---------------------
...........................................................................................................................................................................TTATTTTATTTTATTTTTATTTTTTCAAG..................................................292.000.00--2.00-------------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTTCG.............................................................222.000.001.001.00--------------------
.........................................................................................................................................................................TTTTATTTTATTTTATTTTTATTTTTCCGG...................................................302.000.00--2.00-------------------
......................................................................................................................................................................................................................TTGTCGCCTAGGCTAGAGTGCAGCGGC.........272.000.00--2.00-------------------
....CCAAGAAGCAGAGCAGCA....................................................................................................................................................................................................................................1811.001.00------------1.00---------
.....................................................AGTTTTTTGTTTTTTTTTGC.................................................................................................................................................................................201.000.00--1.00-------------------
....................CAAAGAATATGAAGATA.....................................................................................................................................................................................................................171.000.00----------------1.00-----
.......................................................................................................................................................................................................................TGTCGCCTAGGCTAGAGTGCATCGG..........251.000.00--1.00-------------------
.....................................................AGTTTTTTGTTTTTTTTCTGC................................................................................................................................................................................211.000.00--1.00-------------------
........................................................................................................................................................................ATTTTATTTTATTTTATTTTTCGGG.........................................................251.000.00--1.00-------------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTTTTATTTTCCTG....................................................311.000.00-1.00--------------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTTTTATTTTTTTAG...................................................321.000.00-1.00--------------------
.........................................................................................................................................................................TTTTATTTTATTTTATTTTTATTTTCAGC....................................................291.000.00--1.00-------------------
......................................................................................................................................................................TAATTTTATTTTATTTTATTTTTATTTACG......................................................301.000.00-1.00--------------------
............................................................................................................................................................................................................................CCTAGGCTAGAGTGCAGTGGC.........2101.001.00---------1.00------------
............................................................................................................................................................................TATTTTATTTTATTTTTATTTTACTA....................................................261.000.00---1.00------------------
.....................................................................................................................................................................CTAATTTTATTTTATTTTATTTTAATG..........................................................271.000.00----1.00-----------------
..............................................................................................................................................................................................................................TAGGCTAGAGTGCAGTGATA........201.000.00-------------------1.00--
.....................................................................................................................................................................CTAATTTTATTTTATTTTATTTTCAT...........................................................261.000.00---1.00------------------
.........................................................................................................................................................................TTTTATTTTATTTTATTTTTATTTTCGAG....................................................291.000.00-----1.00----------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTTTTATTTTTAG.....................................................301.000.00----1.00-----------------
...........................................................................................................................................................................................................................GCCTAGGCTAGAGTGCAGTGAGC........231.000.00-----------1.00----------
......................................................GTTTTTTGTTTTTTTTTTGAGAGC............................................................................................................................................................................241.000.00--1.00-------------------
.....................................................................................................................................................................CTAATTTTATTTTATTTTATTTTTCTG..........................................................271.000.00----1.00-----------------
........................................................................................................................................................................ATTTTATTTTATTTTATTTTTATTTTTAAG....................................................301.000.00-1.00--------------------
............................................................................................................................................................................TATTTTATTTTATTTTTATTTTTTCAG...................................................271.000.00----1.00-----------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTTTCCTC..........................................................251.000.00---1.00------------------
.........................................................................................................................................................................TTTTATTTTATTTTATTTTTATTTTTTGGAG..................................................3111.001.00--1.00-------------------
.....................................................AGTTTTTTGTTTTTTTTTTGAT...............................................................................................................................................................................221.000.00-----1.00----------------
..............................................................................................TAGGTTGGATTGCAGTGGCACAGC....................................................................................................................................2411.001.00----------1.00-----------
.............................................................................................................................................................................ATTTTATTTTATTTTTATTTCTTG.....................................................241.000.001.00---------------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTCGAG............................................................231.000.00--1.00-------------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTTCTTG...........................................................241.000.00---1.00------------------
.....................................................................................................................................................................CTAATTTTATTTTATTTTATTTTTATTTTTTTCAG..................................................351.000.00----1.00-----------------
....................................................AAGTTTTTTGTTTTTTTTTGAC................................................................................................................................................................................221.000.00--1.00-------------------
.....................................................................................................................................................................CTAATTTTATTTTATTTTATTTTTCAG..........................................................271.000.00---1.00------------------
...............................................................................................AGGTTGGATTGCAGTGGCGA.......................................................................................................................................201.000.00--------------------1.00-
.............................................................................................................................................................................ATTTTATTTTATTTTTATTTTTTCCGA..................................................271.000.00--1.00-------------------
.....................................................................................................................................................................CTAATTTTATTTTATTTCTA.................................................................201.000.00------1.00---------------
........................................................................................................................................AACTCCTGGGCACACGCC................................................................................................1811.001.00--1.00-------------------
.............................................................................................................................................................................ATTTTATTTTATTTTTATTTTTTAATG..................................................271.000.001.00---------------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTTTTATCTTT.......................................................281.000.00----1.00-----------------
........................................................................................................................................................................ATTTTATTTTATTTTATTTTTCTGC.........................................................251.000.00--1.00-------------------
........................................................................................................................................................................ATTTTATTTTATTTTATTTTTATCGG........................................................261.000.00--1.00-------------------
.........................................................................................................................................................................TTTTATTTTATTTTATTTTTATTTCGGC.....................................................281.000.00--1.00-------------------
......................................................................................................................................................................TAATTTTATTTTATTTTATTTTTATTTTTTTG....................................................321.000.001.00---------------------
..........................................................................................................................................................................TTTATTTTATTTTATTTTTATTTTCTAG....................................................281.000.001.00---------------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTTTTCAC..........................................................251.000.00----1.00-----------------
.........................................................................................................................................................................TTTTATTTTATTTTATTTTTATTTTTTAAAG..................................................311.000.00-1.00--------------------
..........................................................................................................................................................................TTTATTTTATTTTATTTTTATCAAG.......................................................251.000.00-1.00--------------------
...........................................................................................................................................................................TTATTTTATTTTATTTTTATTTTTAATG...................................................281.000.00-1.00--------------------
....................................................AAGTTTTTTGTTTTTTTTTTAAAA..............................................................................................................................................................................241.000.00--------------1.00-------
........................................................................................................................................................................ATTTTATTTTATTTTATTTTTATTTTTCAG....................................................301.000.001.00---------------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTTTTAACG.........................................................261.000.00-1.00--------------------
.......................................................................................................................................................................AATTTTATTTTATTTTATTTTTATTTTATTG....................................................311.000.001.00---------------------
.........................................................................................................................................................................TTTTATTTTATTTTATTTTTATCTAG.......................................................261.000.00---1.00------------------
.........................................................................................................................................................................TTTTATTTTATTTTATTTTTACGAT........................................................251.000.00------1.00---------------
..........................................................................................................................................................................TTTATTTTATTTTATTTTTATAGTG.......................................................251.000.00-1.00--------------------
.......................................................................................................................................................................................ATTTTTATTTTTTGGAGATGGTG............................................231.000.00--1.00-------------------
......................................................................................................................................................................TAATTTTATTTTATTTTATTTCG.............................................................231.000.00---1.00------------------
....................................................................................................................................................................................................GGAGATGGAGTTTCGCTCT...................................1901.001.00---------1.00------------
.....................................................................................................................................................................CTAATTTTATTTTATTTTATTTTTCCAG.........................................................281.000.00---1.00------------------
.............................................................................................................................................................................ATTTTATTTTATTTTTATTTTTTCGG...................................................261.000.00--1.00-------------------
.....................................................................................................................................................................CTAATTTTATTTTATTCTAT.................................................................201.000.00----1.00-----------------
.....................................................................................................................................................................CTAATTTTATTTTATTTTATTTTCTT...........................................................261.000.00----1.00-----------------
..............................................................................................TAGGTTGGATTGCAGTGGCGCGA.....................................................................................................................................231.000.00-----1.00----------------
.................................................................................................................................................................................TATTTTATTTTTATTTTTTCTTG..................................................231.000.00---1.00------------------
........................................................................................................................................................................ATTTTATTTTATTTTATTTTTATCG.........................................................251.000.00----1.00-----------------
.....................................................................................................................................................................CTAATTTTATTTTATTTTATTTAG.............................................................241.000.001.00---------------------
...........................................................................................................................................................................................................GAGTTTCGCTCTTGTCGCCTAGGCTGGT...................281.000.00-----1.00----------------
.....................................................AGTTTTTTGTTTTTTTTTTAACC..............................................................................................................................................................................231.000.00--1.00-------------------
...............................................................................................................................................................................TTTATTTTATTTTTATTTTTTGGGACG................................................271.000.00--1.00-------------------
........................................................................................................................................................................................TTTTTATTTTTTGGAGATGGAGTTTCGCTC....................................3030.670.67--0.67-------------------
..........................................................................................................................................................................TTTATTTTATTTTATTTTTATTTTTTGG....................................................2840.500.50--0.50-------------------

Antisense strand
GAGTCCAAGAAGCAGAGCAGCAAAGAATATGAAGACTTTTAAAGCTCATGGTAAGTTTTTTGTTTTTTTTTTGAGACAGAGTCTCACTGTCACGTAGGTTGGATTGCAGTGGCACAGCCATAGCTCTGAAACCTCAAACTCCTGGGCACACGCCACCAAGCTCAGCTAATTTTATTTTATTTTATTTTTATTTTTTGGAGATGGAGTTTCGCTCTTGTCGCCTAGGCTAGAGTGCAGTGGCATGATCTTG
..................................................((.((..(((((((((......))))))))).)).))........(((((.....((.(((((...))))).)).....)))))....((((..(((....)))....(((...))).............................))))..................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
................................................................................................................................................................................................................................GGCTAGAGTGCAGTGGCATGAGAGC. 251.000.00-----1.00----------------
..............................................................................GAGTCTCACTGTCACGTA.......................................................................................................................................................... 181.000.00-----------------1.00----
................................................................................................................................................................................................................................GGCTAGAGTGCAGTGGCATGGAC... 231.000.00--1.00-------------------
.........................................................................................................................................ACTCCTGGGCACACGCC................................................................................................ 171.000.00---------------1.00------
................................................................................................................................................................................................................................GGCTAGAGTGCAGTGGCATGATGAGC 261.000.00-----1.00----------------
..............................................................................................................................................................................................................................TAGGCTAGAGTGCAGTGGCATGACG... 251.000.00--1.00-------------------
........................................................................................................................................................................................................................CACTGCACTCTAGCCTAGGCGAC........... 2301.001.00--------1.00-------------
....................................................................................................................GCCATAGCTCTGAAACGG.................................................................................................................... 181.000.00-------------1.00--------
.................................................................................................................................................................TCAGCTAATTTTATTAATG...................................................................... 191.000.00---------------------1.00
................................................................................................................................................................................................................................GGCTAGAGTGCAGTGGCATGACGGA. 251.000.00-----1.00----------------
..........................................................................................................................................................................................................................CGCCTAGGCTAGAGTGCAGT............ 201.000.00------------------1.00---
..............GAGCAGCAAAGAATATCCTC........................................................................................................................................................................................................................ 201.000.00-------1.00--------------
..........................................................................................................................................................................................................GCGACAAGAGCGAAACTCC............................. 1901.001.00--------1.00-------------
................................................................................................................................................................................................................................GGCTAGAGTGCAGTGGCATGATGAGG 261.000.00--1.00-------------------
................................................................................................................................................................................................................................GGCTAGAGTGCAGTGGCATGATCTTGG 271.000.00-----1.00----------------
..................................................GTAAGTTTTTTGTTTTTTTAAA.................................................................................................................................................................................. 221.000.00-------1.00--------------
..................................................................................................................................................................................................................ACTGCACTCTAGCCTAGGCGACAAGAGC............ 2840.250.25--0.25-------------------