ID: uc011beq.1_intron_10_0_chr3_53271837_r.3p
GENE: (4)
chr3:53271787-53272036-


(4)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(1)
BRAIN 		(22)
CELL-LINE 		(3)
CERVIX 		(1)
HEART 		(3)
HELA 		(1)
LIVER 		(5)
OTHER 		(1)
SKIN 		(1)
UTERUS

Sense strand
CTCCACTCACTGTTTCTCCCTGCCCTCCTGTTTAAAAAGTACAGAATGATATTAAGAAATGAACGTTTTCCTTATTTTTTTATTTTTATTTTTTCTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTACGATCTCGGCCCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCTCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTACGTGCCACCACGCCTGGCTAATT
..................................................................................................(((((((.....)))))))....((((.((((((((((((..((....))..))))))))..))))))))..................................................................................
.................................................................66........................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189787SRR189785GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040009(GSM532894)
G727T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM956925PAZD5SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCGGGG............................................................................3211.000.005.006.00-------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCCGGGG............................................................................317.000.005.002.00-------------------------------------
.................................................................TTTTCCTTATTTTTTTATTTTTATTTTTTCTG.........................................................................................................................................................3217.007.00---3.001.003.00---------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCCGGC............................................................................325.000.002.003.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCTGCG............................................................................325.000.003.002.00-------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCGGGG............................................................................294.000.003.001.00-------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCTCCC..................................................................................253.000.001.002.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCCGGT............................................................................323.000.002.001.00-------------------------------------
......................................................................CTTATTTTTTTATTTTTATTG...............................................................................................................................................................213.000.00----2.00-1.00--------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGT............................................................................293.000.003.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCGTGG............................................................................322.000.00-2.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCACG...................................................................................252.000.001.001.00-------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGGTTG.........................................................................322.000.001.001.00-------------------------------------
.......................................................................TTATTTTTTTATTTTTATTTATG............................................................................................................................................................232.000.00---2.00-----------------------------------
......................................................................................................................CCCAGGCTGGAGTGCAGTGGTACGGA..........................................................................................................262.000.00-------------------2.00-------------------
.........................................................................................................................AGGCTGGAGTGCAGTGGTACGATCGG.......................................................................................................262.000.002.00--------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGGTCC.........................................................................322.000.002.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCCAGC............................................................................322.000.001.001.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCTGGG..................................................................................262.000.002.00--------------------------------------
.......................................................................TTATTTTTTTATTTTTATTTATTC...........................................................................................................................................................242.000.002.00--------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGGGTC.........................................................................322.000.001.001.00-------------------------------------
.................................................................TTTTCCTTATTTTTTTATTTTTATTTTCTCT..........................................................................................................................................................312.000.00------2.00--------------------------------
...........................................................................................................................................ACGATCTCGGCCCACTGCAACCTCCCCA...................................................................................282.000.002.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCCAGG..................................................................................262.000.001.001.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCTCGG............................................................................322.000.002.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCACGG.............................................................................312.000.002.00--------------------------------------
........................................................................................................................................................ACTGCAACCTCCGCCTCCCGGGTCG.........................................................................252.000.002.00--------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCAGC..............................................................................272.000.00-2.00-------------------------------------
.......................................................................TTATTTTTTTATTTTTATTTTTCCAG.........................................................................................................................................................262.000.00----2.00----------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTACGG..............................................................................271.000.001.00--------------------------------------
.......................................................................TTATTTTTTTATTTTTATTTTCCTC..........................................................................................................................................................251.000.00--1.00------------------------------------
......................................................................CTTATTTTTTTATTTTTATTTTTTATG.........................................................................................................................................................271.000.00---1.00-----------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCCTGCA............................................................................311.000.00-1.00-------------------------------------
.................................................................................................................................................................................................................................TACGTGCCACCACGCCTTGG.....201.000.001.00--------------------------------------
...........................................................................................................................GCTGGAGTGCAGTGGTAG.............................................................................................................181.000.00-------1.00-------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACGCCC......................................................................................221.000.00-1.00-------------------------------------
.................................................................TTTTCCTTATTTTTTTATTTTTATTC...............................................................................................................................................................261.000.001.00--------------------------------------
.................................................................................................................................................................................................................TAGCTGGGACTACAGGTACGAGCT.................241.000.001.00--------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGGATC.........................................................................321.000.001.00--------------------------------------
.......................................................................TTATTTTTTTATTTTTATTTTTCAG..........................................................................................................................................................251.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCAAA....................................................................................241.000.00------------------1.00--------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCTGCG............................................................................291.000.001.00--------------------------------------
.....................................................................................................................................................CCCACTGCAACCTCCGCCTCCCGGGTCC.........................................................................281.000.00-1.00-------------------------------------
.............................................................AACGTTTTCCTTATTTTTTTATTTTTATTTC..............................................................................................................................................................311.000.00--1.00------------------------------------
.........................................................................ATTTTTTTATTTTTATTTTTTCTATAG......................................................................................................................................................271.000.00------1.00--------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCTGGG..................................................................................251.000.00-1.00-------------------------------------
................................................................................................................................................CTCGGCCCACTGCAACCTCCGCCTCCCAGGA...........................................................................311.000.001.00--------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCCCTA.....................................................................................221.000.001.00--------------------------------------
........................................................................................................................................................ACTGCAACCTCCGCCTCCCGGCCC..........................................................................241.000.001.00--------------------------------------
..................................................................TTTCCTTATTTTTTTATTTTTATTTTTCTG..........................................................................................................................................................301.000.00-----1.00---------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACGTCT......................................................................................221.000.00--------------1.00------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCCCAG.....................................................................................231.000.001.00--------------------------------------
......................................................................................................................................................CCACTGCAACCTCCGCCTCCCGGGTCC.........................................................................271.000.001.00--------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCGTGG.............................................................................301.000.001.00--------------------------------------
..............................................................................................................................................................................................................................AGGTACGTGCCACCACGCCTGGCTAATTAA301.000.00--1.00------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCTCCC..................................................................................261.000.00-1.00-------------------------------------
.....................................................................................................................................................CCCACTGCAACCTCCGCCTCCCGGGTTCAAC......................................................................311.000.00--1.00------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCCCAGCT...........................................................................321.000.001.00--------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGGG...........................................................................301.000.00-1.00-------------------------------------
.....................................................................CCTTATTTTTTTATTTTTATTTTATG...........................................................................................................................................................261.000.00------1.00--------------------------------
.................................................................................................................................................................................................................TAGCTGGGACTACAGGTACGTGCCAAG..............271.000.00--1.00------------------------------------
................................................................................................................................................CTCGGCCCACTGCAACCTCCCCCC..................................................................................241.000.001.00--------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCAGGG...........................................................................301.000.001.00--------------------------------------
........................................................................TATTTTTTTATTTTTATTTTTTCTGAGACGG...................................................................................................................................................311.000.001.00--------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGGTTT.........................................................................321.000.001.00--------------------------------------
....................................................................TCCTTATTTTTTTATTACCT..................................................................................................................................................................201.000.00---------------1.00-----------------------
....................................................................................................................................................................................................................CTGGGACTACAGGTACGTGCCGCA..............241.000.00----------------------------1.00----------
.........................................................................................................................AGGCTGGAGTGCAGTGGTACGTGTG........................................................................................................251.000.00---------------------1.00-----------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCCCCA..................................................................................261.000.00-1.00-------------------------------------
....................................................................................................................................................................................TGATTCTCCTCCTGCC......................................................1601.001.00--------1.00------------------------------
.................................................................TTTTCCTTATTTTTTTATTTTTATTTTTCTG..........................................................................................................................................................311.000.00-----1.00---------------------------------
..................................................................TTTCCTTATTTTTTTATTTTTAAG................................................................................................................................................................241.000.00----1.00----------------------------------
..........................................................................................TTTTCTGAGATGGAGTCTCGCTCTGCC.....................................................................................................................................271.000.001.00--------------------------------------
...................................................................................................................TCACCCAGGCTGGAGTGCAGTGGTAGGGC..........................................................................................................291.000.00-1.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCGT..................................................................................261.000.00-1.00-------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCAGCA...................................................................................241.000.00-1.00-------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGACTC.........................................................................321.000.00-1.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTTGC...............................................................................291.000.001.00--------------------------------------
.................................................................TTTTCCTTATTTTTTTATTTTTACTTT..............................................................................................................................................................271.000.00--1.00------------------------------------
............................................................................................................................................................................................................................ACAGGTACGTGCCACCACGCCGGCT.....251.000.001.00--------------------------------------
..................................................................TTTCCTTATTTTTTTATTTTTATTTTTCCT..........................................................................................................................................................301.000.00--1.00------------------------------------
.................................................................TTTTCCTTATTTTTTTATTTGAT..................................................................................................................................................................231.000.00------1.00--------------------------------
.....................................................................................TTATTTTTTCTGAGATACG..................................................................................................................................................191.000.00-1.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTGGG...............................................................................291.000.00-1.00-------------------------------------
..........................................................................TTTTTTTATTTTTATTTTTTCTGCAGT.....................................................................................................................................................271.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCAGAG............................................................................321.000.001.00--------------------------------------
.............................................................................................TCTGAGATGGAGTCTCGCTCTGC......................................................................................................................................231.000.00-1.00-------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCGGGC............................................................................291.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCAGGT.............................................................................311.000.00-1.00-------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGGGG..........................................................................311.000.00-1.00-------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCCTTGA............................................................................311.000.00-1.00-------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCCCGGAC...........................................................................321.000.00-1.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCCGC.............................................................................311.000.00-1.00-------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCCATGG............................................................................311.000.001.00--------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTTCTC..............................................................................271.000.00-1.00-------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCGCTC.............................................................................301.000.00-1.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCATT..........................................................................................181.000.00-----------------------------------1.00---
..........................................................................................TTTTCTGAGATGGAGTCTCGCTCCGCC.....................................................................................................................................271.000.001.00--------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCCTGCG............................................................................311.000.00-1.00-------------------------------------
.........................................................................................TTTTTCTGAGATGGAGTCTCGCCCTC.......................................................................................................................................261.000.00-1.00-------------------------------------
...............................................................................................................................................................................................................AGTAGCTGGGACTACAGGTACGTTG..................251.000.001.00--------------------------------------
.....................................................................................................................................................CCCACTGCAACCTCCGCCTCCGGGC............................................................................251.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCGAGC............................................................................321.000.001.00--------------------------------------
.........................................................................ATTTTTTTATTTTTATTTTGAC...........................................................................................................................................................221.000.00--1.00------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCTGG...................................................................................251.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCCAT.............................................................................311.000.001.00--------------------------------------
.....................................................................................................................................................CCCACTGCAACCTCCGCCTCCCGGAC...........................................................................261.000.00-1.00-------------------------------------
......................................................................CTTATTTTTTTATTTTTATTTTTCTT..........................................................................................................................................................261.000.00-----1.00---------------------------------
...........................................................................................................................................ACGATCTCGGCCCACTGCAACCACGG.....................................................................................261.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCCCGG.....................................................................................231.000.001.00--------------------------------------
........................................................................................................................................................ACTGCAACCTCCGCCTCCCGGGTCGG........................................................................261.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCGTCC...................................................................................251.000.00-1.00-------------------------------------
.........................................................................................................................AGGCTGGAGTGCAGTGGTACTTGC.........................................................................................................241.000.00-1.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCCAG...................................................................................251.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGGGG..................................................................................261.000.00-1.00-------------------------------------
........................................................................................................................................................ACTGCAACCTCCGCCTCCCGGGACC.........................................................................251.000.001.00--------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGATC..........................................................................311.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTTT................................................................................281.000.00------------------1.00--------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGTTT..........................................................................311.000.001.00--------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCCCGGC............................................................................311.000.00-1.00-------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCATG............................................................................291.000.00-1.00-------------------------------------
.....................................................................................................................................................CCCACTGCAACCTCCGCCTCCAGCG............................................................................251.000.00-1.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCGGGT................................................................................281.000.001.00--------------------------------------
........................................................................TATTTTTTTATTTTTATTTTTTCTAAAG......................................................................................................................................................281.000.00----1.00----------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTGCTG..............................................................................301.000.001.00--------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCTGCA............................................................................291.000.001.00--------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCTGGT............................................................................291.000.00-1.00-------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGCCTCCCGGGCAC.........................................................................321.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCCTGC.....................................................................................231.000.00-1.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCAACT.............................................................................311.000.001.00--------------------------------------
.....................................................................................................................................................CCCACTGCAACCTCCGCCTCCCGGGCGC.........................................................................281.000.001.00--------------------------------------
....................................................................................................................................................GCCCACTGCAACCTCCGCCTCCCGGGTTCCCG......................................................................321.000.00--1.00------------------------------------
.........................................................................ATTTTTTTATTTTTATTTTTTCTGAG.......................................................................................................................................................2621.001.000.500.50-------------------------------------
................................................................................................................................................CTCGGCCCACTGCAACCTCCGCCTCCGGGG............................................................................301.000.001.00--------------------------------------
.................................................................TTTTCCTTATTTTTTTATTTTTATTTTCTG...........................................................................................................................................................301.000.00---1.00-----------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTACC.....................................................................................231.000.001.00--------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCACGG.............................................................................301.000.00-1.00-------------------------------------
....................................................................................................................................................GCCCACTGCAACCTCCGCCTACGG..............................................................................241.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCCTTT............................................................................321.000.001.00--------------------------------------
.................................................................................................................................................................................................................TAGCTGGGACTACAGGTACGTGCCACCCA............291.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTGCG...............................................................................291.000.001.00--------------------------------------
.....................................................................................................................................................CCCACTGCAACCTCCGCCTCCCGGGACC.........................................................................281.000.001.00--------------------------------------
..........................................................................TTTTTTTATTTTTATTTTTTCTATTG......................................................................................................................................................261.000.00----1.00----------------------------------
......................................................................................................................................................CCACTGCAACCTCCGCCTCCAGAG............................................................................241.000.00-1.00-------------------------------------
...................................................................TTCCTTATTTTTTTATTTTTATTTTTTCTG.........................................................................................................................................................3011.001.00---1.00-----------------------------------
........................................................................................................................................................ACTGCAACCTCCGCCTCCCGGGTCGA........................................................................261.000.00-1.00-------------------------------------
.................................................................................................................................................TCGGCCCACTGCAACCTCCGGGC..................................................................................231.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCAGGC............................................................................321.000.00-1.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCCTCCTTGG............................................................................321.000.001.00--------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGCAC..................................................................................261.000.001.00--------------------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCGCTG.....................................................................................221.000.00-1.00-------------------------------------
..............................................................................................................................................ATCTCGGCCCACTGCAACCTCCGAGT..................................................................................261.000.00--------------1.00------------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCCTGC.............................................................................301.000.00-1.00-------------------------------------
......................................................................................................................................................CCACTGCAACCTCCGCCTCCGTG.............................................................................231.000.001.00--------------------------------------
.....................................................................................................................................................................................................................TGGGACTACAGGTACG.....................1601.001.00-------1.00-------------------------------
........................................................................................................................................................ACTGCAACCTCCGCCTCCCGGC............................................................................221.000.00---------1.00-----------------------------
.........................................................................................................................................................CTGCAACCTCCGCCTCCCGGGGTGA........................................................................251.000.00-------------------------1.00-------------
....................................................................TCCTTATTTTTTTATTTTTTAG................................................................................................................................................................221.000.00---1.00-----------------------------------
.................................................................TTTTCCTTATTTTTTTATTTTTATTT...............................................................................................................................................................2620.500.500.50--------------------------------------
................................................................................TATTTTTATTTTTTCTGAGATGGAGTC...............................................................................................................................................2730.330.330.33--------------------------------------
..............................................................................TTTATTTTTATTTTTTCTGAGATGG...................................................................................................................................................2540.250.250.25--------------------------------------
..............................................................................TTTATTTTTATTTTTTCTGAGATG....................................................................................................................................................2440.250.25-0.25-------------------------------------
.........................................................................................................................................GTACGATCTCGGCCCACTGCAA...........................................................................................2290.220.22-------------------------------------0.22-
.....................................................................................TTATTTTTTCTGAGATGGAGTCTCGCTCTG.......................................................................................................................................3070.140.14-0.14-------------------------------------
.............................................................................................................................TGGAGTGCAGTGGTACGATCTCGGCC...................................................................................................2670.140.14--------------------------------------0.14
.....................................................................CCTTATTTTTTTATTTTTATTTTTTTTTG........................................................................................................................................................2990.110.11---0.11-----------------------------------
.....................................................................CCTTATTTTTTTATTTTTATTTTTT............................................................................................................................................................2590.110.11-----0.11---------------------------------

Antisense strand
CTCCACTCACTGTTTCTCCCTGCCCTCCTGTTTAAAAAGTACAGAATGATATTAAGAAATGAACGTTTTCCTTATTTTTTTATTTTTATTTTTTCTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTACGATCTCGGCCCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCTCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTACGTGCCACCACGCCTGGCTAATT
..................................................................................................(((((((.....)))))))....((((.((((((((((((..((....))..))))))))..))))))))..................................................................................
.................................................................66........................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189787SRR189785GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040009(GSM532894)
G727T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM956925PAZD5SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
..............................................................................................................................................................AGGAGAATCACTTGAACCCGGGAGGCGGAGGT............................................................ 3203.003.00--------2.00----1.00-------------------------
...............................................................................................................................................................................................................................GGTACGTGCCACCACGCCTGGCTAATCG 282.000.002.00--------------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGGC....................................... 242.000.00-2.00-------------------------------------
..........................................................................................................................................................................................TCGGGAGGCTGAGGCAGGAGGA.......................................... 2202.002.00---------1.00-1.00---------------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGCGTG....................................... 252.000.002.00--------------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGACCC....................................... 242.000.002.00--------------------------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGAGCACC..................................... 272.000.002.00--------------------------------------
.......................................................................................................................................................CACTGCAACCTCCGCCTCCCGGGTTT......................................................................... 262.000.00-----------2.00---------------------------
...............CTCCCTGCCCTCCTGTTCC........................................................................................................................................................................................................................ 192.000.00------------2.00--------------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGACCC....................................... 252.000.001.001.00-------------------------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGACCCC...................................... 262.000.002.00--------------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGTGCC..................................... 262.000.001.001.00-------------------------------------
................................................................................................................................AGTGCAGTGGTACGATCTCGAA.................................................................................................... 221.000.00--------------------------------1.00------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGACGA....................................... 251.000.001.00--------------------------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGAGTAACGC................................... 291.000.00-1.00-------------------------------------
...................................................................................................ATGGAGTCTCGCTCTGTCACCCAGGCTGGCAA....................................................................................................................... 321.000.00-1.00-------------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGTGAAC.................................... 271.000.00-1.00-------------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGTCAC..................................... 261.000.00-1.00-------------------------------------
......................................................................................................................................................CCACTGCAACCTCCGCCTCCCGGGTTCCCG...................................................................... 301.000.00-1.00-------------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGAC....................................... 241.000.00-1.00-------------------------------------
..............................................................................................................................................................................................CCTGCCTCAGCCTCCCGAGTTTTT.................................... 241.000.00-----------------------1.00---------------
.......................................................................................................................................................................................TTCTCCTCCTGCCTCAATCA............................................... 201.000.00--------------------1.00------------------
...............................................................................................................................................TCTCGGCCCACTGCAACCTCCGCCTCCCCAC............................................................................ 311.000.001.00--------------------------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGAGTAGCTCCCC................................ 321.000.00-1.00-------------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGGGC...................................... 251.000.00-1.00-------------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGAA....................................... 241.000.00------------------------------------1.00--
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGAGTACTTC................................... 291.000.00-1.00-------------------------------------
............................................................................................................................ATCGTACCACTGCACTCCAG.......................................................................................................... 2001.001.00-------1.00-------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGTCACC.................................... 271.000.001.00--------------------------------------
.....................................................................................................................................................CCCACTGCAACCTCCGCCTCCCGGGTTCAAGC..................................................................... 321.000.00-1.00-------------------------------------
...............................................................................................................................................................CCTCCGCCTCCCGGGTTCAAGTGATTAC............................................................... 281.000.00--1.00------------------------------------
............................................................................................................................................................................................................CCGAGTAGCTGGGACTACAGC......................... 211.000.00-----------------1.00---------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGTCCG..................................... 261.000.00-1.00-------------------------------------
.................................................................TTTTCCTTATTTTTTTACAG..................................................................................................................................................................... 201.000.00---------------1.00-----------------------
.........................................................................................................................................................................................CTCCTCCTGCCTCAGCCTCCCGAGTGG...................................... 271.000.001.00--------------------------------------
..............................................................................................................................................................................................CCTGCCTCAGCCTCCCGAGTAGCTTTTT................................ 281.000.00-1.00-------------------------------------
..........................................................................................................................GGCTGGAGTGCAGTGGTACGAGGGT....................................................................................................... 251.000.001.00--------------------------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGAGCCC...................................... 261.000.00-1.00-------------------------------------
.......................................................................................................................................................................................................................................CCACCACGCCTGGCTAAGG 191.000.00---------------------------------1.00-----
..........................................................................................................................GGCTGGAGTGCAGTGGTACGATGCG....................................................................................................... 251.000.001.00--------------------------------------
.........................................................................................................................................................CTGCAACCTCCGCCTCCCGGGTTCAGAGG.................................................................... 291.000.00-1.00-------------------------------------
..............................................................................................................................................................ACCTCCGCCTCCCGGGTTCAAGA..................................................................... 231.000.00------------------------1.00--------------
......................................................................................................................................................CCACTGCAACCTCCGCCTCCCGGGTCCT........................................................................ 281.000.001.00--------------------------------------
........................................................................................................................................................ACTGCAACCTCCGCCTCCCGGGCA.......................................................................... 241.000.00----------1.00----------------------------
..........................................................................................................................AGATCGTACCACTGCACTCCAGCC........................................................................................................ 2401.001.00-------------------------------1.00-------
..................................................................................................................................................CGGCCCACTGCAACCTCCGCCGA................................................................................. 231.000.00----------------------1.00----------------
.......................................................................................................................................................CACTGCAACCTCCGCCTCCCGGGTTCATAG..................................................................... 301.000.00----------------------------------1.00----
..............................................................................................................................................................ACCTCCGCCTCCCGGGTTCAAGTG.................................................................... 241.000.00---------1.00-----------------------------
.................CCCTGCCCTCCTGTTGGAA...................................................................................................................................................................................................................... 191.000.00------------1.00--------------------------
...............................................................................................................................................................CCTCCGCCTCCCGGGTTATGC...................................................................... 211.000.00---------1.00-----------------------------
................................................................................................................................AGTGCAGTGGTACGATCTCGATA................................................................................................... 231.000.00----------------1.00----------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGAGTACCCC................................... 291.000.00-1.00-------------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGTGACG.................................... 271.000.00-1.00-------------------------------------
...................................................................................................................................................AGGCGGAGGTTGCAGTGGGCC.................................................................................. 2101.001.00-----------1.00---------------------------
....................................................................................................................................................AGGCGGAGGTTGCAGTGGGC.................................................................................. 2001.001.00----------1.00----------------------------
...............................................................................................................................................................CCTCCGCCTCCCGGGTTCAATCC.................................................................... 231.000.00-1.00-------------------------------------
...........................................................................................................................................................................................................CCCGAGTAGCTGGGACTACCCG......................... 221.000.00-----------------------------1.00---------
................................................................................................................................................CTCGGCCCACTGCAACCTCCGCGCT................................................................................. 251.000.00-1.00-------------------------------------
.......................................................................................................................................................CACTGCAACCTCCGCCTCCCGGGTTCAATAG.................................................................... 311.000.00------------------------------1.00--------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGAGTACGC.................................... 281.000.00-1.00-------------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGCCG...................................... 251.000.001.00--------------------------------------
..........................................................................................................................GGCTGGAGTGCAGTGGTACGATCTGGTC.................................................................................................... 281.000.001.00--------------------------------------
...................................................................................................................................................................CGCCTCCCGGGTTCAAGTGATCAG............................................................... 241.000.00--------1.00------------------------------
........................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTT........................................................... 231.000.00--------1.00------------------------------
...................................................................................................................................................................CGCCTCCCGGGTTCAAGTCTC.................................................................. 211.000.00-1.00-------------------------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGAGTCTTG.................................... 281.000.00-1.00-------------------------------------
................................................................................................................................AGTGCAGTGGTACGATCTCGATAT.................................................................................................. 241.000.00----------------1.00----------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGAGTACG..................................... 271.000.001.00--------------------------------------
.....................................................................................................................................................GGAGGCGGAGGTTGCAGTGGG................................................................................ 2101.001.00----------1.00----------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGTCCC..................................... 261.000.00-1.00-------------------------------------
...........................................................................................................................................................................................CCTCCTGCCTCAGCCTCCCGAGGCG...................................... 251.000.00-1.00-------------------------------------
..................................................................................................................................................................CCGCCTCCCGGGTTCATG...................................................................... 181.000.00-------1.00-------------------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGC.......................................... 221.000.00-----------------1.00---------------------
.........................................................................................................................................................CTGCAACCTCCGCCTCCCGGGTACGG....................................................................... 261.000.001.00--------------------------------------
.....................................................................................................................................................CCCACTGCAACCTCCGCCTT................................................................................. 201.000.00----------1.00----------------------------
......................................................................................................................................................................................ATTCTCCTCCTGCCTCAAGTT............................................... 211.000.00---------------------------1.00-----------
...........................................................................................................................................................................................................CCCGAGTAGCTGGGACTACACGGC....................... 241.000.00-------1.00-------------------------------
.....................................................................................................................................................................CCTCCCGGGTTCAAGTGATTCTCCA............................................................ 251.000.00-------------1.00-------------------------
.........................................................................................................................AGATCGTACCACTGCACTCCAGCCT........................................................................................................ 2501.001.00--------------------------1.00------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGACGC....................................... 251.000.001.00--------------------------------------
..........................................................................................................................................................................................TCCTCCTGCCTCAGCCTCCCGAGTCTT..................................... 271.000.001.00--------------------------------------
.........................................................................................................................................................................................CTCCTCCTGCCTCAGCCTCCCGAGTCGC..................................... 281.000.001.00--------------------------------------
...........................................................................................................................................................GCAACCTCCGCCTCCCGGGTTCAGG...................................................................... 251.000.00-1.00-------------------------------------