ID: uc011beg.1_intron_19_0_chr3_52524850_f.3p
GENE: (20)
chr3:52525168-52525417+


(1)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
HELA 		(1)
KIDNEY 		(6)
LIVER 		(1)
OTHER 		(12)
SKIN 		(1)
XRN.ip

Sense strand
CTCCCCTTCCAGAAAAATGCCTCAGCTCTTCCGGCCTGAAGGAATGGCCTCCTCCCGGGCCCCATGATTCTTTCCTGTGTGGGCCCTCCTGGCCCTGGCCTCTGGGCTGAGGCTTGCTAGGGACTCGGGGTGGCTCTAAGGGGCAGGGATAGGGCTGGGGAGCGCCGGCCTGTGGCCCTGACCAGCCCCTTCTCGTGCAGGTTCCACCCCGATGCAGGTGGTCACGTGCTTGACGCGGGACAGCTACCTG
..............................................................................................................................................(((((((..(((((((..((.((((.....)))).))..)))))))..)))).)))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................................................................................................CCTGACCAGCCCCTTCTCGTGCAGT.................................................25117.007.001.00-8.004.00---2.00--2.00--------------------------------------
.............................................................................................................................................GGCAGGGATAGGGCTGGGGAGCAAT....................................................................................2519.004.00-9.00-----------------------------------------------
.............................................................................................................................................GGCAGGGATAGGGCTGGGGAG........................................................................................2117.007.006.00-------------------------------------1.00----------
................................................................................................................................................................................CCTGACCAGCCCCTTCTCGTGCAG..................................................2417.007.007.00------------------------------------------------
.................................................................................................................................................................................CTGACCAGCCCCTTCTCGTGCAGT.................................................2416.001.006.00------------------------------------------------
..................................................................................................................................................................................TGACCAGCCCCTTCTCGTGCAGT.................................................2316.001.00----3.00----------------------1.00-------1.00--------1.00----
.............................................................................................................................................GGCAGGGATAGGGCTGGGGAGC.......................................................................................2214.004.003.00---------------------------------------1.00--------
.............................................................................................................................................GGCAGGGATAGGGCTGGGGAGCAT.....................................................................................2414.004.004.00------------------------------------------------
................................................................................................................................................................................CCTGACCAGCCCCTTCTCGTGCAT..................................................2414.001.004.00------------------------------------------------
..................................................................................................................................................................................TGACCAGCCCCTTCTCGTGCAGA.................................................2312.001.00----------------1.001.00-------------------------------
................................................................................................................................................................................CCTGACCAGCCCCTTCTCGTGC....................................................2212.002.00------------1.00-------------------1.00----------------
...............................................................................................................................................................................CCCTGACCAGCCCCTTCTCGTGC....................................................2312.002.001.00--------1.00---------------------------------------
......................................................................................................................AGGGACTCGGGGTGGCTCTAAGGGGCA.........................................................................................................2711.001.00---------------------1.00---------------------------
..............................................................................................................................................GCAGGGATAGGGCTGGGGAG........................................................................................2011.001.00----------------------------------1.00--------------
.............................................................................................................................................GGCAGGGATAGGGCTGGGGAGCGGCT...................................................................................261.000.00-----------------------1.00-------------------------
.....................................GAAGGAATGGCCTCCTCCCG.................................................................................................................................................................................................2011.001.00---------------------------------------------1.00---
..................................................................................................................................................................................................................GATGCAGGTGGTCACGTGC.....................1911.001.00-----1.00-------------------------------------------
......................................................................................................................................................................................................................................TGACGCGGGACAGCTACCAAG211.000.00-------------------------------1.00-----------------
................................................................................................................................................................................CCTGACCAGCCCCTTCTCG.......................................................1911.001.00--------1.00----------------------------------------
...............................................................................................................................................................................CCCTGACCAGCCCCTTCTCGTT.....................................................221.000.00------------------1.00------------------------------
......................................................................................................................................................................................................................CAGGTGGTCACGTGCTTGACGC..............2211.001.00------1.00------------------------------------------
.............................................................................................................................................GGCAGGGATAGGGCTGGGGAAA.......................................................................................221.000.00----------------------------------------------1.00--
................................................................................................................................................................................CCTGACCAGCCCCTTCTCGTGCA...................................................2311.001.00-------------------1.00-----------------------------
..................................................................................................................................................................................TGACCAGCCCCTTCTCGTGCAG..................................................2211.001.00------1.00------------------------------------------
....................................................................................................................................................................CCGGCCTGTGGCCCTGACCAGCCCC.............................................................2511.001.00----------------------1.00--------------------------
............................................................................................................................................GGGCAGGGATAGGGCTGGGGAGTATT....................................................................................261.000.00---------------------------------1.00---------------
..............................................................................................................................................GCAGGGATAGGGCTGTCGG.........................................................................................191.000.00------------------------------------------1.00------
......................................................................................................................AGGGACTCGGGGTGGC....................................................................................................................1611.001.00-----------1.00-------------------------------------
.......................................................................................................................................................GGGCTGGGGAGCGCCGCGG................................................................................191.000.00----------------------------1.00--------------------
.....................................................................................................................................................................CGGCCTGTGGCCCTGGGGC..................................................................191.000.00-----------------------------------------------1.00-
.....................................................................................................................................................................CGGCCTGTGGCCCTGACCAGCCCC.............................................................2411.001.00--------------1.00----------------------------------
.......................................................................................................................................................................................................................................GACGCGGGACAGCTACCTTACG221.000.00-----------------------------------------1.00-------
...........................................................................................................................................................TGGGGAGCGCCGGCCTGTGGCCCTGACCAGCCC..............................................................3311.001.00------------------------1.00------------------------
............................TTCCGGCCTGAAGGACCA............................................................................................................................................................................................................181.000.00------------------------------1.00------------------
.................................................................................................................................................................................CTGACCAGCCCCTTCTCGTGCAG..................................................2311.001.00-----------1.00-------------------------------------
.....................................................................................................................................................................CGGCCTGTGGCCCTGACCAGC................................................................2111.001.00-------------------------1.00-----------------------
................................................................................................................................................................................CCTGACCAGCCCCTTCTCGTG.....................................................2111.001.00-----1.00-------------------------------------------
.............................................................................................................................................GGCAGGGATAGGGCTGGAAAT........................................................................................211.000.00---------------1.00---------------------------------
.............................................................................................................................................GGCAGGGATAGGGCTGGGGAGTAAA....................................................................................2511.007.001.00------------------------------------------------
......................................................................................................................................TCTAAGGGGCAGGGATAGGGCTGG............................................................................................2411.001.00--------1.00----------------------------------------
............AAAAATGCCTCAGCTCTT............................................................................................................................................................................................................................1811.001.00------------------------------------------------1.00
..........................................................................................................................................................CTGGGGAGCGCCGGCCTGTGG...........................................................................2111.001.00-----------------------------1.00-------------------
........................................GGAATGGCCTCCTCCCGGGC..............................................................................................................................................................................................2011.001.00--------------------------1.00----------------------
...............................................................................................................................................................................CCCTGACCAGCCCCTTC..........................................................1711.001.00---------1.00---------------------------------------
.............................TCCGGCCTGAAGGAACA............................................................................................................................................................................................................171.000.00-------------------------------------------1.00-----
..............................................................................................................................................GCAGGGATAGGGCTGTCT..........................................................................................181.000.00--------------------1.00----------------------------
.............................................................................................................................................GGCAGGGATAGGGCTGGTAGA........................................................................................211.000.00------------1.00------------------------------------
..................................................................................................................................................GGATAGGGCTGGGGAG........................................................................................1640.250.250.25------------------------------------------------

Antisense strand
CTCCCCTTCCAGAAAAATGCCTCAGCTCTTCCGGCCTGAAGGAATGGCCTCCTCCCGGGCCCCATGATTCTTTCCTGTGTGGGCCCTCCTGGCCCTGGCCTCTGGGCTGAGGCTTGCTAGGGACTCGGGGTGGCTCTAAGGGGCAGGGATAGGGCTGGGGAGCGCCGGCCTGTGGCCCTGACCAGCCCCTTCTCGTGCAGGTTCCACCCCGATGCAGGTGGTCACGTGCTTGACGCGGGACAGCTACCTG
..............................................................................................................................................(((((((..(((((((..((.((((.....)))).))..)))))))..)))).)))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..............................................................................................................................................................................GCCCTGACCAGCCCCTGG.......................................................... 181.000.00------------------------------------1.00------------
......................................................................................................................................................................................................AGGTTCCACCCCGATGCCA................................. 191.000.00-------------1.00-----------------------------------
....................................................................................................................................................................................ACCAGCCCCTTCTCGGG..................................................... 171.000.00-------------------------------------1.00-----------
.............................................................................................................GCCACCCCGAGTCCCTAGCAAGCCT.................................................................................................................... 2511.001.00---------------------------------------1.00---------