ID: uc011bdp.1_intron_5_0_chr3_50327060_r
GENE: (6)
chr3:50327010-50327192-


(1)
AGO1.ip 		(2)
AGO2.ip 		(5)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(21)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
HELA 		(3)
LIVER 		(1)
OTHER 		(10)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GTGCTTCTGCCCTTGGCCTGGGCTGCTACGTGGCTGCCGCTGACATCCAGGTGAGGGGTCTTTGGGCACAGGTGGTAGAGCATCTAGGGCTGTAACTCTGCCTCTGAGCTCCCCTGCCTCTCTGTGCTCCTAGGACCTGGTCTCTTGCCTTGCCTGCTTAGAAAGTGTTTTCAGCCGGTTCTA
...........................................................((..(((((((((.((((((((.((..((((.........))))..))))))...))))..)))))))))..))..................................................
.......................................................56...........................................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189787SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
............................................................TTTGGGCACAGGTGGTAGAGCA.....................................................................................................2216.006.00-------2.00--------------1.00---------1.001.00-----1.00---------------
............................................................TTTGGGCACAGGTGGTAGAGCAT....................................................................................................2315.005.002.00--1.00-------------1.00----------------------------1.00--------
..............................................................TGGGCACAGGTGGTAGAGCATC...................................................................................................2215.005.005.00------------------------------------------------------
.............................................................TTGGGCACAGGTGGTAGAGCAA....................................................................................................223.000.00--3.00----------------------------------------------------
..................................................GTGAGGGGTCTTTGGGCACAGGT..............................................................................................................2313.003.00-3.00-----------------------------------------------------
..................................................GTGAGGGGTCTTTGGGCACAGGTGGTAGAGCATCTAGGGCTGTAACTCTGCCTCTGAGCTC........................................................................6113.003.00-----3.00-------------------------------------------------
.............................................................TTGGGCACAGGTGGTAGAGC......................................................................................................2013.003.003.00------------------------------------------------------
............................................................TTTGGGCACAGGTGGTAGAG.......................................................................................................2012.002.00----1.00--------------------------------------1.00-----------
............................................................TTTGGGCACAGGTGGTAGAGC......................................................................................................2112.002.00----1.00---------1.00----------------------------------------
....TTCTGCCCTTGGCCTGGGCTGC.............................................................................................................................................................2212.002.00------------------------1.00--1.00---------------------------
..................................................GTGAGGGGTCTTTGGGCACAGG...............................................................................................................2212.002.00------2.00------------------------------------------------
............................................................TTTGGGCACAGGTGGTAGAGAAT....................................................................................................2312.002.00--------2.00----------------------------------------------
.......................TGCTACGTGGCTGCCGCTGACATCC.......................................................................................................................................2512.002.00-----------2.00-------------------------------------------
....................................................................CAGGTGGTAGAGCATAAGA................................................................................................192.000.00----------1.00------------------------------------1.00-------
..................................................GTGAGGGGTCTTTGGGCACAGGTGGTAGAGCAT....................................................................................................3311.001.00---------------1.00---------------------------------------
..................................................GTGAGGGGTCTTTGGGCACAGGTGGTAGAGC......................................................................................................3111.001.00---------------------1.00---------------------------------
................................................................................CATCTAGGGCTGTAACTCTG...................................................................................2011.001.00-------------------------1.00-----------------------------
........................................................................TGGTAGAGCATCTAGGGCTGTAACTCTGCC.................................................................................3011.001.00---------------------------------------------1.00---------
...............................................................................................................CCCTGCCTCTCTGTGCTCCTAGT.................................................231.000.00-------------------------------------1.00-----------------
..................TGGGCTGCTACGTGGCTGC..................................................................................................................................................1911.001.00----------------1.00--------------------------------------
..................................................GTGAGGGGTCTTTGGGCACAGGTG.............................................................................................................2411.001.00-1.00-----------------------------------------------------
.................................CTGCCGCTGACATCCAG.....................................................................................................................................1711.001.00------------------1.00------------------------------------
............................................................TTTGGGCACAGGTGGTAGA........................................................................................................1911.001.00-----------------------------1.00-------------------------
............................................................TTTGGGCACAGGTGGTAGAGCATC...................................................................................................2411.001.00---1.00---------------------------------------------------
....................................................................CAGGTGGTAGAGCATTAA.................................................................................................181.000.00--------------------------------------------1.00----------
............................................................TTTGGGCACAGGTGGTAGAGA......................................................................................................2111.002.00--------------------------------------1.00----------------
.............................................TCCAGGTGAGGGGTCGCTG.......................................................................................................................191.000.00----------------------------1.00--------------------------
...................................................................ACAGGTGGTAGAGCATCTAGGGCTAT..........................................................................................261.000.00---1.00---------------------------------------------------
.............................................................TTGGGCACAGGTGGTAGAGCATC...................................................................................................2311.001.00--------------------------1.00----------------------------
.........................CTACGTGGCTGCCGCTG.............................................................................................................................................1711.001.00----------------------------------1.00--------------------
..........................................................................GTAGAGCATCTAGGG..............................................................................................1511.001.00-----------------------------------1.00-------------------
..................................................................................................TGCCTCTGAGCTCCCCTGCGT................................................................211.000.00------------------------------------1.00------------------
.............................................................TTGGGCACAGGTGGTAGA........................................................................................................1811.001.00---------1.00---------------------------------------------
...................................................................ACAGGTGGTAGAGCATCTAGGG..............................................................................................2211.001.00-1.00-----------------------------------------------------
.............................................................TTGGGCACAGGTGGTAGAGCATA...................................................................................................231.000.00----------------------------------------1.00--------------
..........................................................................GTAGAGCATCTAGGGCTGTAACTCTG...................................................................................2611.001.00-------------------1.00-----------------------------------
................CCTGGGCTGCTACGTGGC.....................................................................................................................................................1811.001.00----------1.00--------------------------------------------
...................................................................................CTAGGGCTGTAACTCTG...................................................................................1711.001.00-----------------------1.00-------------------------------
....................................................................CAGGTGGTAGAGCATGGGA................................................................................................191.000.00------------------------------1.00------------------------
.............................................................TTGGGCACAGGTGGTAGAG.......................................................................................................1911.001.00-------------------------------1.00-----------------------
..................TGGGCTGCTACGTGGCTGCCGCT..............................................................................................................................................2311.001.00-----------------------------------------1.00-------------
...............................................................................GCATCTAGGGCTGTAACTC.....................................................................................1911.001.00----1.00--------------------------------------------------
..........................................................................................................................................GGTCTCTTGCCTTGCCTGCT.........................2011.001.00--------------------1.00----------------------------------
.....................................................................................AGGGCTGTAACTCTGCCT................................................................................1820.500.50------------------------------------------------0.50------
............TTGGCCTGGGCTGCTA...........................................................................................................................................................1620.500.50--------------------------------------------------0.50----
.....................................................................................AGGGCTGTAACTCTGCC.................................................................................1720.500.50-------------------------------------------------0.50-----
.....................................................................................AGGGCTGTAACTCTG...................................................................................1540.500.50------------------------------------------------0.25---0.25--
..............................................................................................ACTCTGCCTCTGAGCT.........................................................................1670.430.43---------------------------------------------------0.43---
....................................................................CAGGTGGTAGAGCATC...................................................................................................1650.200.20-----------------------------------------------------0.20-

Antisense strand
GTGCTTCTGCCCTTGGCCTGGGCTGCTACGTGGCTGCCGCTGACATCCAGGTGAGGGGTCTTTGGGCACAGGTGGTAGAGCATCTAGGGCTGTAACTCTGCCTCTGAGCTCCCCTGCCTCTCTGTGCTCCTAGGACCTGGTCTCTTGCCTTGCCTGCTTAGAAAGTGTTTTCAGCCGGTTCTA
...........................................................((..(((((((((.((((((((.((..((((.........))))..))))))...))))..)))))))))..))..................................................
.......................................................56...........................................................................133................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189787SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................CTGCTTAGAAAGTGTTTAATG......... 212.000.00-------------2.00-----------------------------------------
...CTTCTGCCCTTGGCCTGGAC................................................................................................................................................................ 201.000.00------------1.00------------------------------------------
......................................................................................................................................................................GTTTTCAGCCGGTTCTAGGTG 211.000.00------------------------------------------1.00------------
....TTCTGCCCTTGGCCTTTCA................................................................................................................................................................ 191.000.00------------1.00------------------------------------------
..........................................................................................................................................GGTCTCTTGCCTTGCGGG........................... 181.000.00---------1.00---------------------------------------------