ID: uc011bdp.1_intron_1_0_chr3_50325936_r
GENE: (10)
chr3:50325886-50326063-


(2)
AGO1.ip 		(5)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(2)
BRAIN 		(9)
BREAST 		(21)
CELL-LINE 		(4)
HEART 		(3)
HELA 		(5)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(2)
XRN.ip

Sense strand
ACGCTGCCTTCAAGGAAGTGCTGGGTTCGGGCATGCACCACCACCTCCAGGTGCGGGGACGGACAGGGAGGGGACATCTGGTGTGGTTGCTTCAGTCTGGCCTGAGCTCACTGCCCTCTGCCCCCCAGAACAATGAGCTACTCCGTGACATCTTTGGCCTGGGCCCTGTGCTGTTGCT
..................................................((.((....)).))..((.((((.((...((.(((((.((.((((......))))))..)))))))..))))))))....................................................
..................................................51...........................................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189784SRR189786DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191545(GSM715655)
139genomic small RNA (size selected RNA from . (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
..........................................................................................................CTCACTGCCCTCTGCCCCCCAGT.................................................237.000.00-4.00--2.00---------------------------------1.00---------------------
...................................................TGCGGGGACGGACAGGGAGGGGACATC....................................................................................................2716.006.00---3.00-------1.00-------------------------1.00-----------------1.00----
...........................................................................................................TCACTGCCCTCTGCCCCCCAGTAA...............................................244.000.00-4.00----------------------------------------------------------
..................................................GTGCGGGGACGGACAGGGAGGGGACATCTGGTGTGGTTGCTTCAGTCTGGCCTGAGCTCACTGCCCTCTGCCCCCCAGT.................................................794.000.00-------4.00----------------------------------------------------
............................................................................................................................CCAGAACAATGAGCTACTCCGTGACA............................2613.003.00----3.00-------------------------------------------------------
..............................................................................................................................AGAACAATGAGCTACTCCGTGAC.............................2313.003.00---------3.00--------------------------------------------------
.........................................................................................................GCTCACTGCCCTCTGCCCCCCAGTA................................................253.000.00---3.00--------------------------------------------------------
..........................................................................................................CTCACTGCCCTCTGCCCCCCAGATT...............................................252.000.00-2.00----------------------------------------------------------
..................................................GTGCGGGGACGGACAGGGA.............................................................................................................1912.002.00-----------------1.00----------------------1.00-------------------
.........................................................................................................GCTCACTGCCCTCTGCCCCCCAGT.................................................242.000.00-1.00----------------------------------------1.00-----------------
....................................................................................................................................ATGAGCTACTCCGTGACATCTTTGGC....................2612.002.00----------2.00-------------------------------------------------
...........AAGGAAGTGCTGGGTTCGGGC..................................................................................................................................................2112.002.00---------------1.00------------------1.00-------------------------
....................................................................................................................................ATGAGCTACTCCGTGACATCTTTGGCCTGG................3012.002.00--------2.00---------------------------------------------------
....................CTGGGTTCGGGCATGCAC............................................................................................................................................1811.001.00-------------------------------------------------1.00----------
..............................................................................................................................AGAACAATGAGCTACTCCGTG...............................2111.001.00-------------------------------1.00----------------------------
...........AAGGAAGTGCTGGGTTCGG....................................................................................................................................................1911.001.00-------------------------1.00----------------------------------
....................................................................AGGGGACATCTGGTGTGGTTGCTT......................................................................................2411.001.00---------------------------------------1.00--------------------
.........................................................................................................GCTCACTGCCCTCTGCCCCCCAGAAAT..............................................271.000.00--1.00---------------------------------------------------------
...................GCTGGGTTCGGGCATGCACCACC........................................................................................................................................2311.001.00------------1.00-----------------------------------------------
..........................................................................................................CTCACTGCCCTCTGCCCCCCA...................................................2111.001.00---------------1.00--------------------------------------------
..................................................GTGCGGGGACGGACAGGGAA............................................................................................................2011.002.00---------------------------------------------------------1.00--
..................................................GTGCGGGGACGGACAGGGAGGGG.........................................................................................................2311.001.00-------------1.00----------------------------------------------
...................................................TGCGGGGACGGACAGGGAGG...........................................................................................................2011.001.00---------------------------------------------------1.00--------
............................................................................................................................CCAGAACAATGAGCTACTCCGTGACATCT.........................2911.001.00----------------------------------------------------1.00-------
.........................TTCGGGCATGCACCACCACCTCCA.................................................................................................................................2411.001.00--1.00---------------------------------------------------------
.......................................................................................................................................AGCTACTCCGTGACATCTTTGGCCTG.................2611.001.00----------------1.00-------------------------------------------
...........AAGGAAGTGCTGGGTTCGGGCATG...............................................................................................................................................2411.001.00--------------------------------1.00---------------------------
................................................................................................................................AACAATGAGCTACTCCGTGACA............................2211.001.00-----------------------------------------1.00------------------
...................................................TGCGGGGACGGACAGGGAGGGGACATCTTTT................................................................................................311.000.00------1.00-----------------------------------------------------
..................................................................GGAGGGGACATCTGGTGTGGTTGCT.......................................................................................2511.001.00--1.00---------------------------------------------------------
...................................................................GAGGGGACATCTGGTGTGGTTG.........................................................................................2211.001.00------------------1.00-----------------------------------------
...........AAGGAAGTGCTGGGTTCGGGCAT................................................................................................................................................2311.001.00------------------------------------------------------1.00-----
..................................................GTGCGGGGACGGACAGGGAAT...........................................................................................................2111.002.00-----------------------------------------------1.00------------
.........................................................................................................GCTCACTGCCCTCTGCCCCCCAGA.................................................2411.001.00--------------1.00---------------------------------------------
...........................CGGGCATGCACCACCACCTCCAG................................................................................................................................2311.001.00-----------------------1.00------------------------------------
...................................................TGCGGGGACGGACAGGGAGGGGACATTA...................................................................................................281.000.00-----------1.00------------------------------------------------
.............................................................................................................................................TCCGTGACATCTTTGGCC...................1811.001.00------------------------------1.00-----------------------------
...............................................................................................................................................CGTGACATCTTTGGCCTGGGCAA............231.000.00----------------------------------------------1.00-------------
...................................................TGCGGGGACGGACAGGGAG............................................................................................................1911.001.00--------------------------------------------------1.00---------
....................................................................AGGGGACATCTGGTGTGGTTGCTA......................................................................................241.000.00---------------------1.00--------------------------------------
........................................................................................................AGCTCACTGCCCTCTGCCCCC.....................................................2111.001.00--------------1.00---------------------------------------------
...................................................TGCGGGGACGGACAGGGAGGGGAT.......................................................................................................241.000.00-----------------------------1.00------------------------------
...................................................TGCGGGGACGGACAGGGA.............................................................................................................1811.001.00---------------------------------------------1.00--------------
..................................................GTGCGGGGACGGACAGGGAGGGGAA.......................................................................................................251.000.00------1.00-----------------------------------------------------
................................................................................................................................AACAATGAGCTACTCCGTGT..............................201.000.00---------------------------------1.00--------------------------
...................................................TGCGGGGACGGACAGGGAGT...........................................................................................................2011.001.00--------------------------1.00---------------------------------
..................................................GTGCGGGGACGGACAGGG..............................................................................................................1811.001.00---------------------------1.00--------------------------------
..................................................GTGCGGGGACGGACAGGGAGGGGACAT.....................................................................................................2711.001.00-----------------------------------------------------1.00------
.....................................................................................................................................TGAGCTACTCCGTGACATCTTTGGCCTGGGC..............3111.001.00--------1.00---------------------------------------------------
..................................................GTGCGGGGACGGACAGG...............................................................................................................1711.001.00------------1.00-----------------------------------------------
..................................................GTGCGGGGACGGACAGAA..............................................................................................................181.000.00-----------------1.00------------------------------------------
...........................................................................................................TCACTGCCCTCTGCCCCCCTGGT................................................231.000.00------1.00-----------------------------------------------------
...................................................TGCGGGGACGGACAGGGAAG...........................................................................................................2011.001.00----------------------1.00-------------------------------------
...........................................................................................................TCACTGCCCTCTGCCCCCCAGGT................................................231.000.00------------------------------------1.00-----------------------
...................................................TGCGGGGACGGACAGGGAGGGGAC.......................................................................................................2411.001.00--------------------------------------------------------1.00---
...................................................TGCGGGGACGGACAGGGAAT...........................................................................................................2011.001.00------------------------------------------------1.00-----------
....................CTGGGTTCGGGCATGCACCA..........................................................................................................................................2011.001.00-------------------------------------------1.00----------------
.............................................................................................................................CAGAACAATGAGCTACTCCGTGACATC..........................2711.001.00-------------------1.00----------------------------------------
....................................................................AGGGGACATCTGGTGTGGTTG.........................................................................................2111.001.00--1.00---------------------------------------------------------
..........CAAGGAAGTGCTGGGTTCGGGC..................................................................................................................................................2211.001.00----------------1.00-------------------------------------------
............................................................................................................CACTGCCCTCTGCCCCCCAGA.................................................2111.001.00-1.00----------------------------------------------------------
....................................................................................................................................................CATCTTTGGCCTGGGCC.............1720.500.50----------------------------------------------------------0.50-
.............................................................................................................................CAGAACAATGAGCTACT....................................1720.500.50----------0.50-------------------------------------------------
..............................................................................................................................AGAACAATGAGCTAC.....................................1580.120.12------------------0.12-----------------------------------------

Antisense strand
ACGCTGCCTTCAAGGAAGTGCTGGGTTCGGGCATGCACCACCACCTCCAGGTGCGGGGACGGACAGGGAGGGGACATCTGGTGTGGTTGCTTCAGTCTGGCCTGAGCTCACTGCCCTCTGCCCCCCAGAACAATGAGCTACTCCGTGACATCTTTGGCCTGGGCCCTGTGCTGTTGCT
..................................................((.((....)).))..((.((((.((...((.(((((.((.((((......))))))..)))))))..))))))))....................................................
..................................................51...........................................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189784SRR189786DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR343336SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191545(GSM715655)
139genomic small RNA (size selected RNA from . (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
...............................CATGCACCACCACCTGCCG................................................................................................................................ 1911.000.0011.00-----------------------------------------------------------
...........................CGGGCATGCACCACCACTTCT.................................................................................................................................. 212.000.00-----2.00------------------------------------------------------
...........................CGGGCATGCACCACCACCGTC.................................................................................................................................. 211.000.00--1.00---------------------------------------------------------
...........................CGGGCATGCACCACCATTC.................................................................................................................................... 191.000.001.00-----------------------------------------------------------
.........TCAAGGAAGTGCTGGTC........................................................................................................................................................ 171.000.00--------------------1.00---------------------------------------
............................................................................................................CACTGCCCTCTGCCCCCCGAA................................................. 211.000.00--1.00---------------------------------------------------------
.................................................................................................................................ACAATGAGCTACTCCGATAG............................. 201.000.00--1.00---------------------------------------------------------
..............................................................................................................CTGCCCTCTGCCCCCCAACT................................................ 201.000.00-------------1.00----------------------------------------------
...........................CGGGCATGCACCACCACCTTA.................................................................................................................................. 211.000.00-----1.00------------------------------------------------------
................................................................................................................................................................GGGCCCTGTGCTGTTTGA 181.000.00------1.00-----------------------------------------------------
...............................CATGCACCACCACCTGCC................................................................................................................................. 181.000.00------------------------1.00-----------------------------------
...........................CGGGCATGCACCACCACCTTC.................................................................................................................................. 211.000.00-----1.00------------------------------------------------------
..................................................................................................................CCTCTGCCCCCCAGAAAC.............................................. 181.000.00-----------------------------------1.00------------------------
...............................CATGCACCACCACCTGCTG................................................................................................................................ 191.000.001.00-----------------------------------------------------------
...............................CATGCACCACCACCTGCT................................................................................................................................. 181.000.00----------------------------1.00-------------------------------
.............................GGCATGCACCACCACGTT................................................................................................................................... 181.000.00--------------------------------------------1.00---------------
...........................CGGGCATGCACCACCACTCT................................................................................................................................... 201.000.001.00-----------------------------------------------------------
........................................CCACCTCCAGGTGCGAGGC....................................................................................................................... 191.000.00--1.00---------------------------------------------------------
............................GGTGGTGGTGCATGCCC..................................................................................................................................... 1750.200.20-----------------------------------------------------------0.20