ID: uc011bdc.1_intron_3_0_chr3_49928740_r
GENE: (6)
chr3:49928690-49928881-


(2)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(6)
BREAST 		(7)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(4)
HELA 		(4)
OTHER 		(10)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCTATATGTGCCACGGTGACCTGCTCCAGTTCATCCGCTCACCTCAGCGGGTCAGTGTTCATCTGGCTCTGGGTTGGGGGCTGGGCAGCAGCTGGAGAAGGAGCTGCTGTGCCCTTGCCCACCAACCCACCTGTGCCCCCAGAACCCCACCGTGAAGGACCTCATCAGCTTTGGCCTGCAGGTAGCCCGCAG
..................................................................................(((((((((((........)))))))..))))................(((......)))..................................................
.................................................................................82................................................................148..........................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR037938(GSM510476)
293Red. (cell line)		SRR343335SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191529(GSM715639)
131genomic small RNA (size selected RNA from . (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR189785SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................AGCAGCTGGAGAAGGAAA........................................................................................188.000.007.00-----------------1.00--------------------
......................................................................................AGCAGCTGGAGAAGGATT........................................................................................188.000.008.00--------------------------------------
...........................................................................................................TGTGCCCTTGCCCACCAACCCACC.............................................................2416.006.00----3.00------1.00--------------------1.001.00-----
....................................................................CTGGGTTGGGGGCTGGGCAGCA......................................................................................................2215.005.00-4.00-------------------------1.00-----------
......................................................................................AGCAGCTGGAGAAGGAAAT.......................................................................................194.000.004.00--------------------------------------
.....................................................................TGGGTTGGGGGCTGGGCAGCA......................................................................................................2113.003.00-1.002.00------------------------------------
...........................................................................................................TGTGCCCTTGCCCACCAACCCACT.............................................................2413.001.00--------------1.001.00------------------1.00----
.........................................................................TTGGGGGCTGGGCAGCAGCA...................................................................................................203.000.00-3.00-------------------------------------
....................................................................CTGGGTTGGGGGCTGGGCAGC.......................................................................................................2113.003.00---3.00-----------------------------------
...................................................................TCTGGGTTGGGGGCTGGGCAGCA......................................................................................................2312.002.00--2.00------------------------------------
................................ATCCGCTCACCTCAGCGG..............................................................................................................................................1812.002.00--------2.00------------------------------
.........................................................................................AGCTGGAGAAGGAGCTGT.....................................................................................181.000.00------------------------1.00--------------
...........................................................................................................TGTGCCCTTGCCCACCAACCCAT..............................................................231.000.00-------------------1.00-------------------
...........................................................................................................TGTGCCCTTGCCCACCAACCCTTT.............................................................241.000.00-----------------------------------1.00---
........................................................................................................TGCTGTGCCCTTGCCCACCA....................................................................2011.001.00------------1.00--------------------------
....................................................................CTGGGTTGGGGGCTGGGCAGCAGA....................................................................................................241.000.00-1.00-------------------------------------
........................................................................................................TGCTGTGCCCTTGCCCACCACCC.................................................................2311.001.00-----------------------1.00---------------
......................................................................................AGCAGCTGGAGAAGGATAA.......................................................................................191.000.001.00--------------------------------------
........................................................................................................TGCTGTGCCCTTGCCCACCAAC..................................................................2211.001.00-------1.00-------------------------------
...........................................................................................................TGTGCCCTTGCCCACCAACC.................................................................2011.001.00-----------------1.00---------------------
....................................................................CTGGGTTGGGGGCTGGGCAGCAGC....................................................................................................2411.001.001.00--------------------------------------
......................................................................................AGCAGCTGGAGAAGGAATAA......................................................................................201.000.001.00--------------------------------------
.......................................................................................................................................CCCCCAGAACCCCACCATTT.....................................201.000.00-------------------------1.00-------------
........................................................................................................TGCTGTGCCCTTGCCCACCAACA.................................................................2311.001.00--------------------1.00------------------
......................................................................................AGCAGCTGGAGAAGGAATGA......................................................................................201.000.001.00--------------------------------------
...........................................................................................................................AACCCACCTGTGCCCCCCTGT................................................211.000.00----------------1.00----------------------
.........................................................................................AGCTGGAGAAGGAGCTGTA....................................................................................191.000.00------------------------------1.00--------
...................................................................TCTGGGTTGGGGGCTGGGCAGCAGC....................................................................................................2511.001.00---------------------1.00-----------------
......................................................................................AGCAGCTGGAGAAGGAAAAA......................................................................................201.000.001.00--------------------------------------
......................................................................................AGCAGCTGGAGAAGGAAAAG......................................................................................201.000.001.00--------------------------------------
...........................................................................................................TGTGCCCTTGCCCACCAACCCAC..............................................................2311.001.00----------------------1.00----------------
...........................................................................................................TGTGCCCTTGCCCACCAACCCACCT............................................................2511.001.00-------------1.00-------------------------
...........................................................................................................TGTGCCCTTGCCCACCAACCCAA..............................................................231.000.00-------1.00-------------------------------
........................................................................................CAGCTGGAGAAGGAGCTGC.....................................................................................1920.500.50-------------------------------------0.50-
..........CCACGGTGACCTGCT.......................................................................................................................................................................1540.250.25-----0.25---------------------------------
......................................................................................AGCAGCTGGAGAAGGAG.........................................................................................1750.200.200.20--------------------------------------
....................................................................................GCAGCAGCTGGAGAAGG...........................................................................................1760.170.17--------------------------------------0.17

Antisense strand
CCTATATGTGCCACGGTGACCTGCTCCAGTTCATCCGCTCACCTCAGCGGGTCAGTGTTCATCTGGCTCTGGGTTGGGGGCTGGGCAGCAGCTGGAGAAGGAGCTGCTGTGCCCTTGCCCACCAACCCACCTGTGCCCCCAGAACCCCACCGTGAAGGACCTCATCAGCTTTGGCCTGCAGGTAGCCCGCAG
..................................................................................(((((((((((........)))))))..))))................(((......)))..................................................
.................................................................................82................................................................148..........................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR037938(GSM510476)
293Red. (cell line)		SRR343335SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191529(GSM715639)
131genomic small RNA (size selected RNA from . (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR189785SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM339994(GSM339994)
hues6. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
..........................CAGTTCATCCGCTCACAGGG.................................................................................................................................................. 203.000.00------2.00-------------------1.00------------
...........................GTGAGCGGATGAACT...................................................................................................................................................... 1512.002.00-----2.00---------------------------------
.........................................CCTCAGCGGGTCAGTGC...................................................................................................................................... 171.000.00----------1.00----------------------------
.........................................CACTGACCCGCTGAGG....................................................................................................................................... 1611.001.00-------------------------------1.00-------
..........................................CTCAGCGGGTCAGTGACG.................................................................................................................................... 181.000.00---------1.00-----------------------------
..........................................................................................................................CAACCCACCTGTGCCACA.................................................... 181.000.00------------------------------------1.00--
.........................................CCTCAGCGGGTCAGTCG...................................................................................................................................... 171.000.00-----------------------------1.00---------
..........................CAGTTCATCCGCTCATGGG................................................................................................................................................... 191.000.00----------------------------1.00----------