ID: uc011awr.1_intron_5_0_chr3_25913388_r
GENE: (1)
chr3:25913338-25913855-


(1)
AGO2.ip
(2)
BRAIN
(11)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(1)
HEART
(2)
LIVER
(3)
OTHER
(7)
SKIN
(1)
TESTES

Sense strand
CACCAAAAGAGAATGGAAAGTGAAAAGAACACAACAGATCATTTTAAAAGGTACATGCCCTAGAATTTTTTGACAATGTTTGAGCGTGGTTCTCAAAACTACAATTCTATAAGTCAGTGAATGCTGAGTTTTATTTGGAAAGCATGGTCCCACCTTGTATAAAGAGAAAAAGCAGCCCTAGAATAACAGTACCAATTGTAAAGGGCTATTTCATGGCATCAATTAAAGCATGCATGCCATCGGTATAGTCTTTTGCCAAACATGGACCTTCAGTGTGGATACACGAATCTCTGCCAACTTAGCTTCATATTTTACATGAAATATGGATACAACACAGGATAGAAATATAAATGGTCTGCAGTGTGACTTGAAATTTCTGCCTATTAAAGAACTGTGTGTTGGTGACTTATCCATTAACTAAGGGACTTTAACTCCAGGCAAGTTGTTCTAATTCTCTTTTCTTTTCAGTAGTGTGTCAATTGCCTGGTTCTCCACTGACAGCTAAAATTAAACAAAAA
.....................................................(((((...........................((((((.....))))))..(((((.((.(((((....))))).)).....))))).)))))....................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150..............................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR029128(GSM416757)
H520. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)
SRR040040(GSM532925)
G612N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................................................................................................ATTGTAAAGGGCTATGA...................................................................................................................................................................................................................................................................................................................1749.000.0047.00-------------1.00------------1.00---------
..................................................................................................................................................................................................ATTGTAAAGGGCTATGAT..................................................................................................................................................................................................................................................................................................................1810.000.006.00--------------1.001.00---------1.00----1.00-----
..................................................................................................................................................................................................ATTGTAAAGGGCTATGT...................................................................................................................................................................................................................................................................................................................175.000.005.00------------------------------------
.................................................................................................................................................................................................AATTGTAAAGGGCTATGA...................................................................................................................................................................................................................................................................................................................183.000.00------------------1.00-1.00-------1.00--------
..................................................................................................................................................................................................ATTGTAAAGGGCTATGAA..................................................................................................................................................................................................................................................................................................................183.000.003.00------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTCTTTTCTTTTCAGCCT...............................................2222.000.50------2.00------------------------------
........GAGAATGGAAAGTGAAAAGAACACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00---1.00---------------------------------
.....................................................................................GTGGTTCTCAAAACTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-------------1.00-----------------------
..........GAATGGAAAGTGAAAAGAACACAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00---1.00---------------------------------
.......................AAAGAACACAACAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................161.000.00------------1.00------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTCTTTTCTTTTCATA.................................................201.000.00--------1.00----------------------------
.......................................................................................................................................................................................................................................................................................................AACTTAGCTTCATATGGT.............................................................................................................................................................................................................181.000.00-------1.00-----------------------------
......................................................................................................................................................................AAAAAGCAGCCCTAGTGAC.............................................................................................................................................................................................................................................................................................................................................191.000.00------------------------1.00------------
..................................................................................................................................................................................................ATTGTAAAGGGCTATCA...................................................................................................................................................................................................................................................................................................................171.000.001.00------------------------------------
..................................................................................................................................................................................................ATTGTAAAGGGCTATCAT..................................................................................................................................................................................................................................................................................................................181.000.001.00------------------------------------
....................................................................................................................................ATTTGGAAAGCATGGCCAT...............................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------------1.00---------------
......AAGAGAATGGAAAGTCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------1.00--------------------------
..................................................................................................................................................................................................ATTGTAAAGGGCTATGAAG.................................................................................................................................................................................................................................................................................................................191.000.00---------1.00---------------------------
.....AAAGAGAATGGAAAGTGAAAAGAACACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00---1.00---------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTCTTTTCTTTTCAG..................................................1920.500.50--------0.50----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTCTTTTCTTTTCAG..................................................1870.290.29--------0.29----------------------------

Antisense strand
CACCAAAAGAGAATGGAAAGTGAAAAGAACACAACAGATCATTTTAAAAGGTACATGCCCTAGAATTTTTTGACAATGTTTGAGCGTGGTTCTCAAAACTACAATTCTATAAGTCAGTGAATGCTGAGTTTTATTTGGAAAGCATGGTCCCACCTTGTATAAAGAGAAAAAGCAGCCCTAGAATAACAGTACCAATTGTAAAGGGCTATTTCATGGCATCAATTAAAGCATGCATGCCATCGGTATAGTCTTTTGCCAAACATGGACCTTCAGTGTGGATACACGAATCTCTGCCAACTTAGCTTCATATTTTACATGAAATATGGATACAACACAGGATAGAAATATAAATGGTCTGCAGTGTGACTTGAAATTTCTGCCTATTAAAGAACTGTGTGTTGGTGACTTATCCATTAACTAAGGGACTTTAACTCCAGGCAAGTTGTTCTAATTCTCTTTTCTTTTCAGTAGTGTGTCAATTGCCTGGTTCTCCACTGACAGCTAAAATTAAACAAAAA
.....................................................(((((...........................((((((.....))))))..(((((.((.(((((....))))).)).....))))).)))))....................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150..............................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR029128(GSM416757)
H520. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)
SRR040040(GSM532925)
G612N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTTCTAATTCTCTCA........................................................... 1926.000.00-9.006.00-5.005.00-----------------1.00-------------
.................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTTATCCATTAATG................................................................................................... 182.000.00-----------1.00-----------------1.00-------
.....................................................................................................................................................CCACCTTGTATAAAGCTT............................................................................................................................................................................................................................................................................................................................................................... 181.000.00-------1.00-----------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................TAGTTAATGGATAAGTCACCAACACA.................................................................................................. 2611.001.00---1.00---------------------------------
..............................................................................................AAAACTACAATTCTATGGA..................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------------1.00-----------------
.............TGTTCTTTTCACTTTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1831.001.00------------------------------1.00------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCTAATTCTCTAAA.......................................................... 181.000.00-----------------1.00-------------------
.....................................................................................................................................................................................................................................AAGACTATACCGATGGCATGCAT.......................................................................................................................................................................................................................................................................... 2311.001.00----------------------1.00--------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCTAATTCTCTTTTCTTTTCACT................................................. 281.000.00---1.00---------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................TGGTGACTTATCCATGCCC.................................................................................................... 191.000.00-------------------------1.00-----------
......................................................................................TTATAGAATTGTAGTTTTGAGAACCA...................................................................................................................................................................................................................................................................................................................................................................................................................... 2611.001.00---1.00---------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTTATCCATTATG.................................................................................................... 170.670.00---------------------------------0.67---
.................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTTATCCATTATGG................................................................................................... 180.670.00--------------------------------0.33-0.33--
.................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGATAAGTCAC...................................................................................................... 1530.670.67--------------------------------0.33--0.33-
.....................................................................................................................................................................................................................................................................................................ATGAAGCTAAGTTGG.................................................................................................................................................................................................................. 1560.170.17------------------------------------0.17