ID: uc011auv.1_intron_10_0_chr3_12791340_r.5p
GENE: TMEM40(1)
chr3:12810550-12810799-


(1)
AGO1.ip 		(3)
B-CELL 		(2)
BRAIN 		(9)
BREAST 		(19)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(2)
HELA 		(1)
OTHER 		(1)
RRP40.ip 		(17)
SKIN 		(2)
UTERUS

Sense strand
CCTTCCTGGGATGGCCGAGGCCGGAGCCGGCTCCCTCAGCCTTCCGGGAGGTATGGAGAGAAAGGCACGGGCGGGAACCGGGGCTGCACGCAGCACTTGAGGGCCGGCTACAGTTCCGGGTGGGCTTGGGCTTGGTAGGCCCCGCACTTGGAGAGGCCCCGCCAGTCCCGGGCAGTGAGGGGCTTAGCACCCGGGACAGCAGCTGTGGAGGGTGCGCCGGGTACCCCAGCAATGCCAGCCTACTGGCGCT
.......................................................(((.........(((.......)))..((((....)))).)))........................................................................................................................................................
..................................................51..............................................99......................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189787SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040041(GSM532926)
G612T. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
.............................................................................CCGGGGCTGCACGCACGC...........................................................................................................................................................1825.000.008.007.003.00-----1.00------1.00----------------1.001.00-------1.00----1.00-------1.00---------
............................................................................ACCGGGGCTGCACGCGCGC...........................................................................................................................................................1923.000.008.004.005.00------1.00---------1.00------1.001.00-1.00-------------------------------1.00--
.....................................................TGGAGAGAAAGGCACCTGA..................................................................................................................................................................................199.000.00---4.00--------1.00---1.00----1.00---------------1.00---------------1.00----------
..............................................................................................................................................................................GTGAGGGGCTTAGCACTCTG........................................................208.000.00----1.00--------1.00------1.00-1.002.00------1.00---------------------1.00-----------
...........................................................................AACCGGGGCTGCACGCGCGC...........................................................................................................................................................207.000.00--3.00-------1.00---1.00---------1.00---------------1.00-----------------------
...........................................................................................................................................................................GCAGTGAGGGGCTTAGCACTCTG........................................................236.000.00----1.00--2.002.00-------------------------------------------------1.00-----
............................................................................ACCGGGGCTGCACGCGCG............................................................................................................................................................185.000.002.00-1.00----------------1.00-----------1.00--------------------------------
.............................................................................CCGGGGCTGCACGCACG............................................................................................................................................................174.000.001.00-----------------1.00-1.00---------------------1.00---------------------
............................................................................................................................................................................CAGTGAGGGGCTTAGCACTCTG........................................................223.000.00-----------1.00-1.00--------1.00-----------------------------------------
.............................................................................CCGGGGCTGCACGCATGC...........................................................................................................................................................183.000.001.002.00--------------------------------------------------------------
.............................................................................................................................................................................AGTGAGGGGCTTAGCACTCTG........................................................213.000.00-----------1.00---1.00----------------------------------1.00-------------
.............................................................................CCGGGGCTGCACGCACTC...........................................................................................................................................................182.000.00-2.00--------------------------------------------------------------
.............................................................................CCGGGGCTGCACGCACGCT..........................................................................................................................................................192.000.00-1.001.00-------------------------------------------------------------
...........................................................................AACCGGGGCTGCACGCGCG............................................................................................................................................................192.000.00---------1.00--------------1.00---------------------------------------
.....................................................TGGAGAGAAAGGCACGTC...................................................................................................................................................................................182.000.00-----------------2.00----------------------------------------------
.............................................................................................................................................................................AGTGAGGGGCTTAGC..............................................................1502.002.00------1.00-------------------------------1.00-------------------------
.............................................................................CCGGGGCTGCACGCACGT...........................................................................................................................................................181.000.00-----------------------------------------------1.00----------------
...................................................................CGGGCGGGAACCGGGG.......................................................................................................................................................................1601.001.00------1.00---------------------------------------------------------
.....................................................TGGAGAGAAAGGCACGTAC..................................................................................................................................................................................191.000.00------------------1.00---------------------------------------------
............................................................................ACCGGGGCTGCACGCGC.............................................................................................................................................................171.000.00-------1.00--------------------------------------------------------
............................................................................ACCGGGGCTGCACGCACGC...........................................................................................................................................................191.000.00-------------------------------------------------------1.00--------
.............................................................................CCGGGGCTGCACGCACGGG..........................................................................................................................................................191.000.001.00---------------------------------------------------------------
.............................................................................CCGGGGCTGCACGCAGGC...........................................................................................................................................................181.000.001.00---------------------------------------------------------------
..............................................................................CGGGGCTGCACGCAGGAC..........................................................................................................................................................181.000.00-------------------------1.00--------------------------------------
.....................................................TGGAGAGAAAGGCACGTACT.................................................................................................................................................................................201.000.00----------------------------1.00-----------------------------------
........................................................................................................................................................................CGGGCAGTGAGGGGCTTAGCACTCTG........................................................261.000.00----1.00-----------------------------------------------------------
.....................................................TGGAGAGAAAGGCACCCTG..................................................................................................................................................................................191.000.00------------1.00---------------------------------------------------
.....................................................TGGAGAGAAAGGCACCTC...................................................................................................................................................................................181.000.00-----------------------------------1.00----------------------------
....CCTGGGATGGCCGAGCGG....................................................................................................................................................................................................................................181.000.00----------1.00-----------------------------------------------------
...............................................................................................................................................................................TGAGGGGCTTAGCACTCTG........................................................191.000.00-----------1.00----------------------------------------------------
...........................................................................AACCGGGGCTGCACGCGCTC...........................................................................................................................................................201.000.00-1.00--------------------------------------------------------------
.....................................................TGGAGAGAAAGGCACATCC..................................................................................................................................................................................191.000.00--------------1.00-------------------------------------------------
.....................................................TGGAGAGAAAGGCACACCC..................................................................................................................................................................................191.000.00--------------------------------------------1.00-------------------
.............................................................................................................................................................................AGTGAGGGGCTTAGCACATTT........................................................211.000.00---------------------------------------------1.00------------------
..................................................................................................................................................................................................GACAGCAGCTGTGGA.........................................1501.001.00-----------------------------------------------------------1.00----
.............................................................................CCGGGGCTGCACGCAGATGT.........................................................................................................................................................201.000.00-------------------------------------------------1.00--------------
.....................................................TGGAGAGAAAGGCACAACC..................................................................................................................................................................................191.000.00---1.00------------------------------------------------------------
.............................................................................CCGGGGCTGCACGCACAC...........................................................................................................................................................181.000.00-1.00--------------------------------------------------------------
...........................................................................AACCGGGGCTGCACGCGC.............................................................................................................................................................181.000.00----------------------------------1.00-----------------------------
.....................................................TGGAGAGAAAGGCACGGCCTG................................................................................................................................................................................211.000.00----------------1.00-----------------------------------------------
..........................................................................................................................................................................GGCAGTGAGGGGCTTAGCACTCTG........................................................241.000.00----1.00-----------------------------------------------------------
...................................................................................................................CCGGGTGGGCTTGGGCTTGG...................................................................................................................2040.250.25--------------------------------------------------------------0.25-
..............................................................................CGGGGCTGCACGCAGC............................................................................................................................................................1660.170.17---------------------------------------------------------------0.17
.............................................................................CCGGGGCTGCACGCAGC............................................................................................................................................................1760.170.17-------------------------0.17--------------------------------------

Antisense strand
CCTTCCTGGGATGGCCGAGGCCGGAGCCGGCTCCCTCAGCCTTCCGGGAGGTATGGAGAGAAAGGCACGGGCGGGAACCGGGGCTGCACGCAGCACTTGAGGGCCGGCTACAGTTCCGGGTGGGCTTGGGCTTGGTAGGCCCCGCACTTGGAGAGGCCCCGCCAGTCCCGGGCAGTGAGGGGCTTAGCACCCGGGACAGCAGCTGTGGAGGGTGCGCCGGGTACCCCAGCAATGCCAGCCTACTGGCGCT
.......................................................(((.........(((.......)))..((((....)))).)))........................................................................................................................................................
..................................................51..............................................99......................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189787SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040041(GSM532926)
G612T. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
....................CCGGAGCCGGCTCCCTGAC................................................................................................................................................................................................................... 194.000.00-----4.00----------------------------------------------------------
.......................GAGCCGGCTCCCTCATGGA................................................................................................................................................................................................................ 191.000.00------------------------------------------------------------1.00---
....................CCGGAGCCGGCTCCCTGA.................................................................................................................................................................................................................... 181.000.00--------------------------------------------------------1.00-------
...........................................................................................................................................................GCCCCGCCAGTCCCGGC.............................................................................. 171.000.00---------------------------------------------------------1.00------
....................CCGGAGCCGGCTCCCGACG................................................................................................................................................................................................................... 191.000.00---------1.00------------------------------------------------------
...................................................................................CTGCACGCAGCACTTGCAG.................................................................................................................................................... 191.000.00---------------------1.00------------------------------------------
..................GGCCGGAGCCGGCTCCCTCAGCT................................................................................................................................................................................................................. 231.000.00---1.00------------------------------------------------------------
......................................................................................................................................................................................................................CGCCGGGTACCCCAGGG................... 171.000.00---------------------------------------------------1.00------------
..............................CTCCCTCAGCCTTCCATA.......................................................................................................................................................................................................... 181.000.00------------------------------------1.00---------------------------
.......................GAGCCGGCTCCCTCAGCTG................................................................................................................................................................................................................ 191.000.00------1.00---------------------------------------------------------
...........................................................................................................................................................................................................................................CAGCCTACTGGCGCTTAC 181.000.00---------------------------------------1.00------------------------
......................GCTGAGGGAGCCGGCTCC.................................................................................................................................................................................................................. 1801.001.00------------------------------------------------1.00---------------
.............................................................................CCGGGGCTGCACGCAGC............................................................................................................................................................ 171.000.00----------1.00-----------------------------------------------------
................GAGGCCGGAGCCGGCTCCCTCAGATT................................................................................................................................................................................................................ 261.000.00-------------------------------------------1.00--------------------