ID: uc011aut.1_intron_3_0_chr3_12627299_r.3p
GENE: (9)
chr3:12627249-12627498-


(2)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(19)
CELL-LINE 		(1)
FIBROBLAST 		(7)
HEART 		(3)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(2)
OTHER 		(21)
SKIN 		(1)
XRN.ip

Sense strand
GACCAATCCCTGCCTGTCTTCTGGAAGAAGGTGCATTTCAAAAGCACTTTAAAGAACTTCAGAAACCTTAGGAAGTTCAGTGCAGAGAGGCTGTGACAGAGGTAAGGTGGAGAGATTACCGTGTTATAAAGAACTTTGGGATATTTTTCAAAATTAACCTGACCATTCTTTTGAAACCAGAGTCCTTAACAAGCATTGAGATATATTTCTCCATGAAGGCTTAACAGTGAAAATTGGAGATTTTGGTTTG
.........................................................................................................(((((.....))))).(((((...((.(((((((......((((((((...............))))))))))))))).)))))))...........................................................
.....................................................................................................102...............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM956925PAZD5SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................................................................................................AGTCCTTAACAAGCATTGAGA.................................................21155.0055.003.0012.0011.00-2.004.00-4.001.00--1.002.001.00---2.00-2.00-----1.00----1.00------1.00-1.00--1.001.00--------1.001.00--1.00-1.00---------
.....................................................................................................................................................................................GTCCTTAACAAGCATTGAGA.................................................20134.0034.0015.00---------2.001.00-1.001.003.00--2.00-1.00------------1.001.00---1.00-----------1.00---1.00------1.001.00-1.00---
.....................................................................................................................................................................................GTCCTTAACAAGCATTGAG..................................................19112.0012.002.00--3.00-------------------1.001.00----------1.00--------1.00--1.00---------1.00--1.00-------
....................................................................................................................................................................................AGTCCTTAACAAGCATTGAG..................................................2019.009.001.00--4.00--------1.00----------1.00-----1.00-1.00------------------------------------
.....................................................................................................................................................................................GTCCTTAACAAGCATTGAGAA................................................2116.0034.004.00---2.00---------------------------------------------------------------
....................................................................................................................................................................................AGTCCTTAACAAGCATTGAGATA...............................................2313.003.00----3.00---------------------------------------------------------------
.....................................................................................................................................................................................GTCCTTAACAAGCATTGAGT.................................................2013.0012.00-----------1.00-1.00----------------------------------1.00-------------------
.....................................................................................................................................................................................GTCCTTAACAAGCATTGAGATAT..............................................2313.003.00----------1.00---------1.00----------------------------------1.00------------
..............................................................................................................................................................................................................TTCTCCATGAAGGCTTAACA........................2012.002.00------2.00-------------------------------------------------------------
........................................AAAGCACTTTAAAGAACTTCAGAAACC.......................................................................................................................................................................................2712.002.00--------------1.00-------1.00---------------------------------------------
...........................................................................................................................................................................TGAAACCAGAGTCCTTAACAAGCATT.....................................................2612.002.002.00-------------------------------------------------------------------
...................................................................TTAGGAAGTTCAGTGCAGAGAGGCTG.............................................................................................................................................................2612.002.00----------------2.00---------------------------------------------------
..................................................................................................................................................................................................................CCATGAAGGCTTAACAGTGAAAATTG..............2611.001.00---------1.00----------------------------------------------------------
.....................................................................................................................................................................................GTCCTTAACAAGCATTGAGATATATAA..........................................271.000.001.00-------------------------------------------------------------------
.........................AGAAGGTGCATTTCAAGTCG.............................................................................................................................................................................................................201.000.00-----------------------------------------1.00--------------------------
..........................................................................................................GTGGAGAGATTACCGTGTT.............................................................................................................................1911.001.00----------------------------------------1.00---------------------------
.....................................................................................................................................................................................GTCCTTAACAAGCATTGAGAAG...............................................2211.0034.00---------1.00----------------------------------------------------------
....................................................................................................................................................................................................................ATGAAGGCTTAACAGTGAAAATTGGAG...........2711.001.00--------1.00-----------------------------------------------------------
....................................................................................................................................................................................AGTCCTTAACAAGCATTG....................................................1811.001.00---------------------------------------------1.00----------------------
.......................................AAAAGCACTTTAAAGAACTTCAGAAAC........................................................................................................................................................................................2711.001.00--------1.00-----------------------------------------------------------
.......................................AAAAGCACTTTAAAGAACTTCAGAAACC.......................................................................................................................................................................................2811.001.00----------------------1.00---------------------------------------------
.....................................................................................AGAGGCTGTGACAGAGGTAAGGTGGAG..........................................................................................................................................2711.001.00---------------------1.00----------------------------------------------
........................................................................................................................................................................................................................................ATTGGAGATTTTGGTTTG1811.001.001.00-------------------------------------------------------------------
..............................................................................................................................................................................................................TTCTCCATGAAGGCTTAACAGTGAA...................2511.001.00------1.00-------------------------------------------------------------
........................................................................................................................................................................................................ATATATTTCTCCATGAAGGCTTAAC.........................2511.001.00------------------------------------1.00-------------------------------
...................................................AAGAACTTCAGAAACCTTAGG..................................................................................................................................................................................2111.001.00--------------------------1.00-----------------------------------------
..................................................................................................................................................................................AGAGTCCTTAACAAGCATT.....................................................1911.001.00---------------------------------------------------------------1.00----
...........................................................................................................TGGAGAGATTACCGTGTTAT...........................................................................................................................2011.001.00---------------------------1.00----------------------------------------
................................................................................................................................................................................CCAGAGTCCTTAACAAGCATAA....................................................221.000.00--------------------------------1.00-----------------------------------
.......................................................................................................................................................................................................................................AATTGGAGATTTTGGTTTG1911.001.00---------------------------------------------------1.00----------------
......................................................................................GAGGCTGTGACAGAGGTAAG................................................................................................................................................2011.001.00-------------------------------------------------1.00------------------
.....................................................................AGGAAGTTCAGTGCAGAGAGGCTG.............................................................................................................................................................2411.001.00---------------------1.00----------------------------------------------
............................................................................................................................................................................................................ATTTCTCCATGAAGGCTTAACAGCGA....................261.000.00----------------------------------------------1.00---------------------
........................................................................................................................................................................................................ATATATTTCTCCATGAAGGCTTAACAG.......................2711.001.00---------1.00----------------------------------------------------------
..................................................AAAGAACTTCAGAAACCTTAGGAAGT..............................................................................................................................................................................2611.001.00-----------------------------------------------------------1.00--------
...........................................................................................................................TTATAAAGAACTTTGGGA.............................................................................................................1820.500.50-----------------------------------------------------------------0.50--
......................................................................................GAGGCTGTGACAGAGGT...................................................................................................................................................1730.330.33------------------------0.33-------------------------------------------
..................................................................................................................................................................................................................................GTGAAAATTGGAGATT........1660.170.17-------------------------------------------------------------------0.17

Antisense strand
GACCAATCCCTGCCTGTCTTCTGGAAGAAGGTGCATTTCAAAAGCACTTTAAAGAACTTCAGAAACCTTAGGAAGTTCAGTGCAGAGAGGCTGTGACAGAGGTAAGGTGGAGAGATTACCGTGTTATAAAGAACTTTGGGATATTTTTCAAAATTAACCTGACCATTCTTTTGAAACCAGAGTCCTTAACAAGCATTGAGATATATTTCTCCATGAAGGCTTAACAGTGAAAATTGGAGATTTTGGTTTG
.........................................................................................................(((((.....))))).(((((...((.(((((((......((((((((...............))))))))))))))).)))))))...........................................................
.....................................................................................................102...............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM956925PAZD5SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.............................................................................................................................................................GTTTCAAAAGAATGGTCAGG......................................................................... 2012.002.002.00-------------------------------------------------------------------
.........................................................................AGTTCAGTGCAGAGACTG............................................................................................................................................................... 181.000.00--------------1.00-----------------------------------------------------
....................................................CTAAGGTTTCTGAAGTTCT................................................................................................................................................................................... 1911.001.00----------------------------1.00---------------------------------------
......................................................................................................................................................AGAATGGTCAGGTTAATTT................................................................................. 1911.001.00------1.00-------------------------------------------------------------
.....................................................................CTGCACTGAACTTCCT..................................................................................................................................................................... 1650.200.20------------------------------------------------------------------0.20-