| (2) BREAST | (12) CELL-LINE | (1) CERVIX | (1) HELA | (1) KIDNEY | (4) LIVER | (1) OTHER | (3) SKIN | (1) UTERUS | (1) XRN.ip |
| AAGTACTTCACCCATGCACGGAGAGCCCAAAGGCCCACAGCCACCTACTGGTGAGAGGTGCTGGGAGGTTCCTAGAGTGGTGGGGAGGTCCCAGCAAGCCACCCTGTGACCTCCTCCTGCCCCTTTCTCAGTGCTGTCACTGATGGGATCCCAGCTGCTTCTGAGGGGAAGATCCAGGCTG ....................................................((((((.((.((((((((..(((.(((((.(((....))).....))))).))).))))))))...)).))))))...................................................... ..................................................51..............................................................................131................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189782 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189783 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037941(GSM510479) 293DroshaTN. (cell line) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR191605(GSM715715) 76genomic small RNA (size selected RNA from t. (breast) | SRR037936(GSM510474) 293cand1. (cell line) | SRR330900(SRX091738) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR037935(GSM510473) 293cand3. (cell line) | SRR039614(GSM531977) HBV-infected Liver Tissue. (liver) | SRR094130(GSM651906) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR553575(SRX182781) source: Kidney. (Kidney) | GSM416733(GSM416733) HEK293. (cell line) | TAX577740(Rovira) total RNA. (breast) | SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin) | SRR037931(GSM510469) 293GFP. (cell line) | SRR040007(GSM532892) G601T. (cervix) | GSM359178(GSM359178) hela_nucl_t. (hela) | SRR039193(GSM494812) HL60 cell line is derived from acute promyelo. (cell line) | SRR189786 | SRR037934(GSM510472) 293cand4_rep3. (cell line) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR444042(SRX128890) Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................CCTCCTCCTGCCCCTTTCTCAG.................................................. | 22 | 1 | 18.00 | 18.00 | 15.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................CCTCCTCCTGCCCCTTTCTCAGT................................................. | 23 | 1 | 8.00 | 8.00 | 5.00 | - | - | - | - | - | - | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................ACCTCCTCCTGCCCCTTTCTCAGT................................................. | 24 | 1 | 7.00 | 7.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................ACCTCCTCCTGCCCCTTTCTCAG.................................................. | 23 | 1 | 7.00 | 7.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................GCTGCTTCTGAGGGGAAGATCCAGG... | 25 | 1 | 4.00 | 4.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGAGGTGCTGGGAGGTTCCTAG.......................................................................................................... | 25 | 1 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................CTCCTCCTGCCCCTTTCTCAGT................................................. | 22 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................CCTCCTCCTGCCCCTTTCTC.................................................... | 20 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................CCTCCTCCTGCCCCTTTCTCA................................................... | 21 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................AAAGGCCCACAGCCATGAG...................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........CACCCATGCACGGAGA............................................................................................................................................................. | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGAGGTGCTGGGAGGTTCA............................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............ATGCACGGAGAGCCCAAAGGCCCA................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...................................................................................................................CCTGCCCCTTTCTCAGTGC............................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................ACTGGTGAGAGGTGCTGGGAGGTTCCCAG.......................................................................................................... | 29 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................CCTCCTCCTGCCCCTTTCTCAGA................................................. | 23 | 1 | 1.00 | 18.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................GAGCCCAAAGGCCCACAGCC........................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .....................................................................................................CCCTGTGACCTCCTCCTGCCCCTTTCTCC................................................... | 29 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................CCTCCTCCTGCCCCTTTCTCAGAT................................................ | 24 | 1 | 1.00 | 18.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGAGGTGCTGGGAGGTTAA............................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .............................................................................................................CCTCCTCCTGCCCCTTTCTCAGTT................................................ | 24 | 1 | 1.00 | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................................................................................GGAAGATCCAGGCTGACGG | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..................................................GTGAGAGGTGCTGGGAGGTTCCTAGA......................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................CCACCTACTGGTGAGAGGT.......................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .................................CCCACAGCCACCTACT.................................................................................................................................... | 16 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................AGGTTCCTAGAGTGGTG................................................................................................... | 17 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| AAGTACTTCACCCATGCACGGAGAGCCCAAAGGCCCACAGCCACCTACTGGTGAGAGGTGCTGGGAGGTTCCTAGAGTGGTGGGGAGGTCCCAGCAAGCCACCCTGTGACCTCCTCCTGCCCCTTTCTCAGTGCTGTCACTGATGGGATCCCAGCTGCTTCTGAGGGGAAGATCCAGGCTG ....................................................((((((.((.((((((((..(((.(((((.(((....))).....))))).))).))))))))...)).))))))...................................................... ..................................................51..............................................................................131................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189782 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189783 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037941(GSM510479) 293DroshaTN. (cell line) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR191605(GSM715715) 76genomic small RNA (size selected RNA from t. (breast) | SRR037936(GSM510474) 293cand1. (cell line) | SRR330900(SRX091738) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR037935(GSM510473) 293cand3. (cell line) | SRR039614(GSM531977) HBV-infected Liver Tissue. (liver) | SRR094130(GSM651906) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR553575(SRX182781) source: Kidney. (Kidney) | GSM416733(GSM416733) HEK293. (cell line) | TAX577740(Rovira) total RNA. (breast) | SRR330904(SRX091742) tissue: normal skindisease state: normal. (skin) | SRR037931(GSM510469) 293GFP. (cell line) | SRR040007(GSM532892) G601T. (cervix) | GSM359178(GSM359178) hela_nucl_t. (hela) | SRR039193(GSM494812) HL60 cell line is derived from acute promyelo. (cell line) | SRR189786 | SRR037934(GSM510472) 293cand4_rep3. (cell line) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR444042(SRX128890) Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................CACTCTAGGAACCTCCCAGCACCTCTCA...................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................GAGGGGAAGATCCAGGT.. | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................AAAGGCCCACAGCCACTCTG..................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ....................................................................................................ACCCTGTGACCTCCTCAGTG............................................................. | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................CCTCCTCCTGCCCCTTTCTCACCAC............................................... | 25 | 1 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................GCCCACAGCCACCTAAT.................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................GATCCCAGCTGCTTCTTTG................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ............................................................................................................ACCTCCTCCTGCCCCTATGG..................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................GCCACCCTGTGACCTCCTCCTGCCCCTCTG...................................................... | 30 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |