ID: uc011arf.1_intron_1_0_chr22_50169394_r
GENE: (12)
chr22:50169344-50169747-


(2)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(12)
BREAST
(10)
CELL-LINE
(12)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
LIVER
(1)
OTHER
(14)
SKIN
(1)
TESTES

Sense strand
TGAAGGTGGTGTGGGCCAAGTGCAGCGGCTACCCCTCCTACCCGGCACTGGTGAGTACGGCTCTCGTGGCGCCTGCGGGTCCAGAGGAGGCTCACACAGCTGCGGGGCGGGGGTGGTCCGAGGAGGCTCACGGCGGTGGTCCAAGGAGGTTCCACAGCTGGCGGGGGGGCGGGGTTGGTCAGAGGAGGTTCACACAGCTGGAAGGGGCAGGGGTGGTTCGGCGAGGGGGGCGTGGGGGTGGTCTGAGGAGGCTCACACAGCTGGGGTGGGGAGGCGGGGGGGGGTGCCAGTGACAGGTGGGGTTGTTTATGGGTGTGAGCCTCACAATGACCTCAGCGGGTCCTTCTCGTGCAGATCATCGACCCCAAGATGCCCCGTGTGCCTGGCCACCACAACGGCGTCAC
............................................................................................................................................................................................................((((.......)))).(((((..((((.((..((.((((....(((((((((((.(((..........)))...........(((..(((((......)))))..)))))))))))))).....))))))..)).))))..)))))......................................................
.........................................................................................................................................................................................................202.....................................................................................................................................................354................................................
SizePerfect hitTotal NormPerfect NormSRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
TAX577744(Rovira)
total RNA. (breast)
SRR040037(GSM532922)
G243T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR040016(GSM532901)
G645N. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR040012(GSM532897)
G648N. (cervix)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532871(GSM532871)
G652N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR040032(GSM532917)
G603N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191512(GSM715622)
163genomic small RNA (size selected RNA from . (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
......................................................................................................................................................................................................................................................................................................................................ATGACCTCAGCGGGTCCTTCTCGTGCAGA.................................................2919.009.008.00-------------------------------------------------1.00-------
..............................................................................................................................................................................................................GCAGGGGTGGTTCGGTGG....................................................................................................................................................................................184.000.00-----------------1.001.00---------------------------1.00-----1.00-----
..........................................................................................................................................................................................................................................................................................................................GTGAGCCTCACAATGACCTCAGAAA.................................................................252.000.00-----------2.00----------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................CCAAGATGCCCCGTGTGCC.....................1912.002.00----------2.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................GGGGAGGCGGGGGGGGTTG......................................................................................................................191.000.00--------------------------------------1.00-------------------
....................................................................................................................................................................GGGGGCGGGGTTGGTATTT.............................................................................................................................................................................................................................191.000.00-------------1.00--------------------------------------------
............................CTACCCCTCCTACCCGGCACTGACC...............................................................................................................................................................................................................................................................................................................................................................251.000.00--------------------1.00-------------------------------------
.................................................................................................................................................................................................................................................................................GCGGGGGGGGGTGCCGCGC................................................................................................................191.000.00--------1.00-------------------------------------------------
...........................................................................CGGGTCCAGAGGAGGGC........................................................................................................................................................................................................................................................................................................................171.000.00----------------------------1.00-----------------------------
....................................................................................................TGCGGGGCGGGGGTGGGAC.............................................................................................................................................................................................................................................................................................191.000.00---------------1.00------------------------------------------
..............................................................................................................................................................................................................GCAGGGGTGGTTCGGCG.....................................................................................................................................................................................1711.001.00--1.00-------------------------------------------------------
............................................................................................................................................................................GGTTGGTCAGAGGAGGTTC.....................................................................................................................................................................................................................1911.001.00--1.00-------------------------------------------------------
........................................................................................................GGGCGGGGGTGGTCCGCC..........................................................................................................................................................................................................................................................................................181.000.00-----------------------------1.00----------------------------
......................................................................................................................................................................................................................................................................................................................................ATGACCTCAGCGGGTCC.............................................................1711.001.00----------------------1.00-----------------------------------
...........................................................................................................................................................................................................................GGCGAGGGGGGCGTGTGG.......................................................................................................................................................................181.000.00----1.00-----------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................AGATGCCCCGTGTGCCTGGCCACC.............2411.001.00---------------------------------------------1.00------------
......................................................................................................................................................................................................................................................................................................................................ATGACCTCAGCGGGTCCTTCCCGT......................................................241.000.00---------------1.00------------------------------------------
.................................................................................................................................................................CGGGGGGGCGGGGTTGGCGGG..............................................................................................................................................................................................................................211.000.00--1.00-------------------------------------------------------
............................................................................................................................................................................................................................................................................GGGAGGCGGGGGGGGGTGGGA...................................................................................................................211.000.00-------------1.00--------------------------------------------
.............................................................................................................................................................................................................................................................................GGAGGCGGGGGGGGGTGTGGG..................................................................................................................211.000.00------------------------1.00---------------------------------
..........................................................................................................................................................................................................................................................................TGGGGAGGCGGGGGGGCGTG......................................................................................................................201.000.00-------1.00--------------------------------------------------
..................................................................................................................................................................................................................................................................................................TGACAGGTGGGGTTGTT.................................................................................................1711.001.00-----------------------------------------------1.00----------
...............................................................................................................................................................................................................................................................................AGGCGGGGGGGGGTGTCCA..................................................................................................................191.000.00--------------------------------------------1.00-------------
...........................................................................................................................................................AGCTGGCGGGGGGGCGGGG......................................................................................................................................................................................................................................1911.001.00------------------1.00---------------------------------------
..............................................................................................................................................................................................................................................................................GAGGCGGGGGGGGGTGC.....................................................................................................................1711.001.00-----------------------1.00----------------------------------
...........................................................................................................................................................................................................................................................................GGGGAGGCGGGGGGGGGT.......................................................................................................................1811.001.00--------------------------1.00-------------------------------
...............................................................................................................................................................................................................................AGGGGGGCGTGGGGGCAGG..................................................................................................................................................................191.000.00---------------------------------------1.00------------------
..........................................................................................................................................................................................................................................GGGGTGGTCTGAGGATTT........................................................................................................................................................181.000.00-------------------1.00--------------------------------------
.............................................................................................................................................................................................................................CGAGGGGGGCGTGGGGGCGG...................................................................................................................................................................201.000.00-------------------------------------------------1.00--------
...........................................................................................................................................................................................................................................................................GGGGAGGCGGGGGGGCGA.......................................................................................................................181.000.00---------1.00------------------------------------------------
...............................................................................................................................................................................................................................................GGTCTGAGGAGGCTCAGTT..................................................................................................................................................191.000.00-------------------------------1.00--------------------------
...............................................................................................................................................................................................................................................................................AGGCGGGGGGGGGTGGAC...................................................................................................................181.000.00---1.00------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................ATGACCTCAGCGGGTCCTTCTCGTGCAG..................................................2811.001.00-----------------------------------1.00----------------------
........................................................ACGGCTCTCGTGGCGCGG..........................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------1.00------------------------------
...........................................................................................................................................................................................................................................................................GGGGAGGCGGGGGGGGGAG......................................................................................................................191.000.00---1.00------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................TGTGCCTGGCCACCACAACGGCGC...241.000.00-----1.00----------------------------------------------------
...................................................................................GAGGAGGCTCACACAGCTG..............................................................................................................................................................................................................................................................................................................1921.001.00-----------------------------------------1.00----------------
...............................................................................................................................................................................................................................................................................AGGCGGGGGGGGGTGTCTC..................................................................................................................191.000.00---------1.00------------------------------------------------
................................................................................................................................................................................................................................................................ACAGCTGGGGTGGGGAGGGGGG..............................................................................................................................221.000.00-----1.00----------------------------------------------------
................................................................................................................................................................GCGGGGGGGCGGGGTTGGATCC..............................................................................................................................................................................................................................221.000.00---1.00------------------------------------------------------
.............................................................................................................................................................................................................................................................................GGAGGCGGGGGGGGGTGTC....................................................................................................................191.000.00------------------------------------1.00---------------------
.......................................................................................................................................................................................................................................................................GGGTGGGGAGGCGGGGGG...........................................................................................................................1840.500.50-----------------------------------------------------0.50----
...........................................................................................................................................................................................................................................................................................................................................CTCAGCGGGTCCTTCT.........................................................1630.330.33------------------------------------------------------0.33---
............................................................................................................................................................................GGTTGGTCAGAGGAG.........................................................................................................................................................................................................................1550.200.20--------0.20-------------------------------------------------
.........................................................................................................................................................................................................................................................................GTGGGGAGGCGGGGGGG..........................................................................................................................1760.170.17---------------------------------------------------------0.17

Antisense strand
TGAAGGTGGTGTGGGCCAAGTGCAGCGGCTACCCCTCCTACCCGGCACTGGTGAGTACGGCTCTCGTGGCGCCTGCGGGTCCAGAGGAGGCTCACACAGCTGCGGGGCGGGGGTGGTCCGAGGAGGCTCACGGCGGTGGTCCAAGGAGGTTCCACAGCTGGCGGGGGGGCGGGGTTGGTCAGAGGAGGTTCACACAGCTGGAAGGGGCAGGGGTGGTTCGGCGAGGGGGGCGTGGGGGTGGTCTGAGGAGGCTCACACAGCTGGGGTGGGGAGGCGGGGGGGGGTGCCAGTGACAGGTGGGGTTGTTTATGGGTGTGAGCCTCACAATGACCTCAGCGGGTCCTTCTCGTGCAGATCATCGACCCCAAGATGCCCCGTGTGCCTGGCCACCACAACGGCGTCAC
............................................................................................................................................................................................................((((.......)))).(((((..((((.((..((.((((....(((((((((((.(((..........)))...........(((..(((((......)))))..)))))))))))))).....))))))..)).))))..)))))......................................................
.........................................................................................................................................................................................................202.....................................................................................................................................................354................................................
SizePerfect hitTotal NormPerfect NormSRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
TAX577744(Rovira)
total RNA. (breast)
SRR040037(GSM532922)
G243T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR040016(GSM532901)
G645N. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR040012(GSM532897)
G648N. (cervix)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532871(GSM532871)
G652N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR040032(GSM532917)
G603N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191512(GSM715622)
163genomic small RNA (size selected RNA from . (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
.............................................................................................................................................................................................................................................................................GGAGGCGGGGGGGGGTCC..................................................................................................................... 188.000.00-2.00--1.00-------1.00-2.00-------------------1.00--1.00--------------------
.............................................................................................................................................................................................................................................................................GGAGGCGGGGGGGGGTCCC.................................................................................................................... 195.000.00-4.00----------1.00---------------------------------------------
............................................................................................................................................................................................................................................................................GGGAGGCGGGGGGGGAACA..................................................................................................................... 193.000.00------3.00---------------------------------------------------
.................................................................................................................................................................................................................................................................................GCGGGGGGGGGTGCCGGG................................................................................................................. 183.000.00----1.00----------------------------1.00------1.00-----------------
........................................................................................................................................................................................GAGGTTCACACAGCTGTG.......................................................................................................................................................................................................... 182.000.00----------------2.00-----------------------------------------
.................................................................................................................................................................................................................................................................................GCGGGGGGGGGTGCCGCG................................................................................................................. 182.000.00--1.00-----1.00-------------------------------------------------
.......................................................................................................................................................................................................................................GTGGGGGTGGTCTGACTGG.......................................................................................................................................................... 191.000.00--------------------------------1.00-------------------------
.................................................................................................................................................................................................................................................................................GCGGGGGGGGGTGCCGCC................................................................................................................. 181.000.00-------1.00--------------------------------------------------
...................................................................................................CTGCGGGGCGGGGGTTCTT.............................................................................................................................................................................................................................................................................................. 191.000.00-----------------1.00----------------------------------------
............................................................................................................................................................................GGTTGGTCAGAGGAGGTAG..................................................................................................................................................................................................................... 1951.000.00------------------------------1.00---------------------------
...........................................................................................................................................................................................................................................................................GGGGAGGCGGGGGGGCCA....................................................................................................................... 181.000.00-------------------------1.00--------------------------------
...................................................................................................CTGCGGGGCGGGGGTGTT............................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------------1.00---------
...........................................................................................................................................................................................................................................................................GGGGAGGCGGGGGGGGCCCT..................................................................................................................... 201.000.00-------------------------------------------1.00--------------
.................................................................................................................................................................................................................................................................................GCGGGGGGGGGTGCCGCGG................................................................................................................ 191.000.00-------1.00--------------------------------------------------
............................................................................................................................................................................................................................GCGAGGGGGGCGTGGGGC...................................................................................................................................................................... 181.000.00---------------------------------------------------1.00------
............................................................................................................................................................................................................................................................................................................................................................................CCAAGATGCCCCGTGTAGAC.................... 201.000.00-----1.00----------------------------------------------------
.................................................................................................................................................................................................................................................................................GCGGGGGGGGGTGCCGGC................................................................................................................. 181.000.00------------------------------------------1.00---------------
................................................................................................................................................................................................................................................................................GGCGGGGGGGGGTGCGGG.................................................................................................................. 181.000.00---------------------1.00------------------------------------
.....................................................................CTGGACCCGCAGGCG................................................................................................................................................................................................................................................................................................................................ 1530.330.33-------------------------------------------------------0.33--
..............................................................................................................................................................ACCCCGCCCCCCCGCCA..................................................................................................................................................................................................................................... 1760.170.17--------------------------------------------------------0.17-