ID: uc011als.1_intron_11_0_chr22_32188804_f.3p
GENE: (12)
chr22:32193386-32193635+


(3)
B-CELL
(2)
BRAIN
(1)
BREAST
(5)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(3)
HELA
(2)
LIVER
(1)
OTHER
(30)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TTAAACCATCAGATATCGTGAGAACTCCCTCACTATCACAAGAACAGCATGGAGGAAACCACCCCCATGATCCAGTCACCTCCCACCAGGTTCCTCCCTCGACACATGGGTATTACAATTTGAGATGAAATTTGGGAGGGGACACAGAGCCAAACCATATCAGCTGCTCAATATCCATTTTATGATAATACTCTTTTCAGAGTGGTGGTGCAGAATGAGAGAAGAGAAGAATGGACTTCACTTCTCGTAA
...........................................................................................(((((((......(((...((........))..)))......)))))))......((((...............)))).................................................................................
...........................................................................................92..................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM532874(GSM532874)
G699T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
................................................................................................CCTCGACACATGGGTTTGT.......................................................................................................................................1944.000.004.00-5.004.001.003.00--2.002.002.00-1.002.00-2.001.001.001.00-1.001.00-1.001.001.001.00-------1.001.00-1.00--------1.001.001.00-1.00----
...............................................................................................CCCTCGACACATGGGTTTGT.......................................................................................................................................207.000.001.00-1.00--------1.001.00----------------1.00---------1.00-----1.00---------
................................................................................................CCTCGACACATGGGTTTG........................................................................................................................................184.000.00------1.00------------1.00--------------------1.00-1.00------------
...............................................................................................CCCTCGACACATGGGTTTG........................................................................................................................................192.000.00-----------1.00--------------------------1.00----------------
........................................................................................................................................................................................................................GAGAGAAGAGAAGAATGAG...............191.000.00----------------------------1.00--------------------------
.................................................................................................................................................................................................................GCAGAATGAGAGAAGAGAAT.....................201.000.00---------------------------------------------------1.00---
....................................................................................................................................................................................................................GAATGAGAGAAGAGAAGAATGG................2211.001.00--------------1.00----------------------------------------
................................................................................................................................................................................................................TGCAGAATGAGAGAAGAGAAGAATGG................2611.001.00-------------------------------------------1.00-----------
.........................................................................................................................................................ACCATATCAGCTGCTTAGA..............................................................................191.000.00------------------------------1.00------------------------
..............................CACTATCACAAGAACAGGCTC.......................................................................................................................................................................................................211.000.001.00------------------------------------------------------
....................................................................................................................................................................................................................GAATGAGAGAAGAGAAGAATGGA...............2311.001.00--------------1.00----------------------------------------
....................................................................................................................................TGGGAGGGGACACAGAGACAC.................................................................................................211.000.00-----------------------------------------1.00-------------
................................................................................................CCTCGACACATGGGTTTGA.......................................................................................................................................191.000.00----1.00--------------------------------------------------
..............................................................................................................................................CACAGAGCCAAACCATTTG.........................................................................................191.000.00------1.00------------------------------------------------
..................................................................ATGATCCAGTCACCTCCCACTGGC................................................................................................................................................................241.000.00--------------------------------1.00----------------------
..........................................................................................................................................................................................................TGGTGGTGCAGAATGAGAGAAGAGAAGAATG.................3111.001.00------------------------------------1.00------------------
................................................................................................CCTCGACACATGGGTTTTT.......................................................................................................................................191.000.00----1.00--------------------------------------------------
............................................................................................................................................................ATATCAGCTGCTCAATG.............................................................................171.000.00-------------------------------1.00-----------------------
.............................................................................................................................................................................................................TGGTGCAGAATGAGAG.............................1660.500.50-----------------------------------------------------0.50-
.................................................................................................................................................................................................................................GAAGAATGGACTTCAC.........1630.330.33----------------0.33--------------------------------------
............................................................................................................................................................................................................................GAAGAGAAGAATGGACT.............1740.250.25------------------------------------------------------0.25

Antisense strand
TTAAACCATCAGATATCGTGAGAACTCCCTCACTATCACAAGAACAGCATGGAGGAAACCACCCCCATGATCCAGTCACCTCCCACCAGGTTCCTCCCTCGACACATGGGTATTACAATTTGAGATGAAATTTGGGAGGGGACACAGAGCCAAACCATATCAGCTGCTCAATATCCATTTTATGATAATACTCTTTTCAGAGTGGTGGTGCAGAATGAGAGAAGAGAAGAATGGACTTCACTTCTCGTAA
...........................................................................................(((((((......(((...((........))..)))......)))))))......((((...............)))).................................................................................
...........................................................................................92..................................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM532874(GSM532874)
G699T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
.................................................................CATGATCCAGTCACCTCCCACCGT................................................................................................................................................................. 242.000.00-2.00-----------------------------------------------------
...............................................................................................................................................ACAGAGCCAAACCATAGAA........................................................................................ 192.000.00-2.00-----------------------------------------------------
.............................................................................................................................................................................................................TGGTGCAGAATGAGAATAG.......................... 191.000.00-------1.00-----------------------------------------------
.........................................................................AGTCACCTCCCACCATATG.............................................................................................................................................................. 191.000.00-------1.00-----------------------------------------------
.....................................................................................................................................................................................................................................AATGGACTTCACTTCACA... 181.000.00---------------------------------1.00---------------------
.................................................................CATGATCCAGTCACCTCCCACAA.................................................................................................................................................................. 231.000.00-------------------------------------------------1.00-----
.................................................................CATGATCCAGTCACCTCCCACCAT................................................................................................................................................................. 241.000.00-1.00-----------------------------------------------------
............................................................................................................................................GACACAGAGCCAAACCATATCAGTCTG................................................................................... 271.000.00---------------------------1.00---------------------------
...........................................................................................................................................GGACACAGAGCCAAACCATATCAGTCTG................................................................................... 281.000.00--------------------------------------------1.00----------
.................................................................CATGATCCAGTCACCTCCCACCATT................................................................................................................................................................ 251.000.00----------------------------------------------------1.00--
.................................................................CATGATCCAGTCACCTCCCACTGA................................................................................................................................................................. 241.000.00-1.00-----------------------------------------------------
................................................................................................................................................CAGAGCCAAACCATATCAAAA..................................................................................... 211.000.00----------------------1.00--------------------------------