ID: uc011ali.1_intron_0_0_chr22_31501115_r
GENE: (5)
chr22:31501065-31501243-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(15)
BREAST
(14)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(4)
HEART
(1)
KIDNEY
(3)
LIVER
(2)
OTHER
(20)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
GGGCCGACCCTGAGCTCGTGCTGCTGGGCCGCCGCTACGAGGAACTAGAGGTGAGGCCGTGGGAGGTGGGCTGGGGGCGAGGCCAGAGGCGAGGCCCAGCCTGCTGACCCCGCCCCTCCTCCGCCTCAGCGCATCCCACTCAGTGAAATGACCCGCGAAGAGATCAATGCGCTAGTGCA
...................................................((((((....(((((......(((((((.((.(((((((........)))).))).)).))))))))))))))))))...................................................
..................................................51............................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR038855(GSM458538)
D10. (cell line)
GSE20417(GSM514985)
Colon and lung cancer pool.
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR038854(GSM458537)
MM653. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR191512(GSM715622)
163genomic small RNA (size selected RNA from . (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTGAGGCCGTGGGAGGTG...............................................................................................................18110.0010.00-7.00-3.00-------------------------------------------------------------------
..........................................................................GGGCGAGGCCAGAGGCGAGGCCCAGCCTG............................................................................2915.005.00------1.00-------------------1.00----------------------1.00---1.00----------1.00------
..................................................GTGAGGCCGTGGGAGGTGGGCTGGGGT......................................................................................................2715.001.005.00----------------------------------------------------------------------
...........................................................................................................CCCCGCCCCTCCTCCGCCTCAGT.................................................233.000.00------1.00---1.00------------------------------------1.00-----------------------
............................................................................................................CCCGCCCCTCCTCCGCCTCAGT.................................................223.000.00----------1.00-1.00---------------------1.00------------------------------------
...............................................................................AGGCCAGAGGCGAGGCCCAGCCTG............................................................................2413.003.00---------------1.00----1.00------------------------------------------1.00-------
.............................................................................................................CCGCCCCTCCTCCGCCTCAGT.................................................2112.001.00----------------------------------------1.00---------------------1.00--------
..................................................GTGAGGCCGTGGGAGGTGGGCTGGGT.......................................................................................................262.000.00--------------2.00--------------------------------------------------------
...............................................................................AGGCCAGAGGCGAGGCCCAGCC..............................................................................2212.002.00-------------------------1.00-------------------1.00-------------------------
.................................GCTACGAGGAACTAGAGC................................................................................................................................182.000.00-------2.00---------------------------------------------------------------
..................................................GTGAGGCCGTGGGAGGTGGGC............................................................................................................2112.002.00-----------------1.00------------------------1.00----------------------------
..................................................GTGAGGCCGTGGGAGGTGG..............................................................................................................1912.002.00-------------------------------1.00----------------1.00----------------------
......................GCTGGGCCGCCGCTACGA...........................................................................................................................................1812.002.00---------2.00-------------------------------------------------------------
.............................................................................................................CCGCCCCTCCTCCGCCTCAGA.................................................2112.001.00--1.00-------------------------------------------------------1.00------------
............................................................................GCGAGGCCAGAGGCGAGGCCCAGCCTG............................................................................2712.002.00---------------1.00-------------------------------------------------1.00-----
........................................................................GGGGGCGAGGCCAGAAGTG........................................................................................191.000.00---------------------------------1.00-------------------------------------
..............................................................................................................CGCCCCTCCTCCGCCTCA...................................................1811.001.00------------------------------------------------------------1.00----------
............AGCTCGTGCTGCTGGAC......................................................................................................................................................171.000.00-----------1.00-----------------------------------------------------------
..................................................GTGAGGCCGTGGGAGGTGAA.............................................................................................................2011.0010.00-------------------------------------1.00---------------------------------
.............................................................................................................CCGCCCCTCCTCCGCCTCAGTATC..............................................2411.001.00------------------------------------1.00----------------------------------
......................................................................................................................................CCCACTCAGTGAAATGACCCGCG......................2311.001.00--1.00--------------------------------------------------------------------
...............................CCGCTACGAGGAACTAGAG.................................................................................................................................1911.001.00--1.00--------------------------------------------------------------------
..............................................................................................................CGCCCCTCCTCCGCCTCAGT.................................................201.000.00---------------------------------------------------------1.00-------------
...........................................................TGGGAGGTGGGCTGGGGTTT....................................................................................................201.000.00----------------1.00------------------------------------------------------
..................................CTACGAGGAACTAGAGGTGAGG...........................................................................................................................2211.001.00-----1.00-----------------------------------------------------------------
..................TGCTGCTGGGCCGCCGCT...............................................................................................................................................1811.001.00-----------------------------------------------------------1.00-----------
.............................................................................................................CCGCCCCTCCTCCGCCTCAGAAA...............................................2311.001.00--------------------------------------------------1.00--------------------
.............................................................................................................CCGCCCCTCCTCCGCCTCAG..................................................2011.001.00---------------------------------------1.00-------------------------------
..................................................GTGAGGCCGTGGGAGGTGGGCT...........................................................................................................2211.001.00----1.00------------------------------------------------------------------
..........................................................................................................................................................GCGAAGAGATCAATGCG........1711.001.00----1.00------------------------------------------------------------------
..............................................................................................................................................GTGAAATGACCCGCG......................1511.001.00------------------1.00----------------------------------------------------
...............................................................................................................................................TGAAATGACCCGCGAAGAGATCAATA..........261.000.00-------1.00---------------------------------------------------------------
..................................CTACGAGGAACTAGAGCGCA.............................................................................................................................201.000.00----------------------1.00------------------------------------------------
..................................................GTGAGGCCGTGGGAGGTGGGCTGGGGC......................................................................................................2711.001.001.00----------------------------------------------------------------------
.....GACCCTGAGCTCGTGCTGCTGGGC......................................................................................................................................................2411.001.00----1.00------------------------------------------------------------------
...................................................................................................................................CATCCCACTCAGTGAAATGACCCGCGAAGAG.................3111.001.00-----1.00-----------------------------------------------------------------
..........................................................................GGGCGAGGCCAGAGGAA........................................................................................171.000.00-------------1.00---------------------------------------------------------
..................................................GTGAGGCCGTGGGAGGTGGGCTGGTCT......................................................................................................271.000.00---------------------------------------------------1.00-------------------
..................................................GTGAGGCCGTGGGAGGGGGA.............................................................................................................201.000.00--------------------------------------------1.00--------------------------
..........................................................................GGGCGAGGCCAGAGGAAAC......................................................................................191.000.00---------------------1.00-------------------------------------------------
..................................................GTGAGGCCGTGGGAGGTGGGCTGGGAT......................................................................................................271.000.00--------1.00--------------------------------------------------------------
............AGCTCGTGCTGCTGGGCCG....................................................................................................................................................1911.001.00-----------------------------------------1.00-----------------------------
...............................CCGCTACGAGGAACT.....................................................................................................................................1511.001.00-----1.00-----------------------------------------------------------------
.........................................................................GGGGCGAGGCCAGAGGCGAGGCCCAGCCTG............................................................................3011.001.00-------------------------------------------1.00---------------------------
..................................................GTGAGGCCGTGGGAGGT................................................................................................................1721.001.00----------------0.50-------------------------------------------------0.50----
..............................................................................................................CGCCCCTCCTCCGCCTCAGTTT...............................................221.000.00---------------------------1.00-------------------------------------------
..................................................GTGAGGCCGTGGGAGGTGGGCTGGGTA......................................................................................................271.000.00--------1.00--------------------------------------------------------------
..................................................GTGAGGCCGTGGGAGGTGGGCTGGGGGT.....................................................................................................2811.001.001.00----------------------------------------------------------------------
..................................................GTGAGGCCGTGGGAGGTGGGCTGGGG.......................................................................................................2611.001.001.00----------------------------------------------------------------------
.........................................................................................................................CGCCTCAGCGCATCCGGC........................................181.000.00-------------------------------------------------------1.00---------------
.......................................................................TGGGGGCGAGGCCAGAGGCGA.......................................................................................2111.001.00-----------------------------1.00-----------------------------------------
..................................................GTGAGGCCGTGGGAGGTGGGCTGGGGG......................................................................................................2711.001.001.00----------------------------------------------------------------------
..........................................................................GGGCGAGGCCAGAGGCGAGGCCCAGCCAC............................................................................291.000.00-------------1.00---------------------------------------------------------
........................................................CCGTGGGAGGTGGGCTGGG........................................................................................................1911.001.00------1.00----------------------------------------------------------------
............................................................GGGAGGTGGGCTGGGGCGGA...................................................................................................201.000.00-----------1.00-----------------------------------------------------------
..........................................................................................................ACCCCGCCCCTCCTCCGCCTTT...................................................221.000.00----------------------------1.00------------------------------------------
..........TGAGCTCGTGCTGCTGGGC......................................................................................................................................................1911.001.00--1.00--------------------------------------------------------------------
...........................................................TGGGAGGTGGGCTGGTGG......................................................................................................181.000.00----------------------------------------------1.00------------------------
..................................................GTGAGGCCGTGGGAGGTGGGCTGT.........................................................................................................241.000.00--------------------------------------1.00--------------------------------
..........................................................................................................ACCCCGCCCCTCCTCCGT.......................................................181.000.00-------------------------------------------------------------1.00---------
..............................................................................................................CGCCCCTCCTCCGCCTCAGA.................................................201.000.00----------------------------------------------------1.00------------------
.....................................................................................................................................TCCCACTCAGTGAAAT..............................1620.500.50-------------------------------------------------------------------0.50---
........................................................CCGTGGGAGGTGGGCT...........................................................................................................1630.330.33-----------------0.33-----------------------------------------------------
.......................................................................................................CTGACCCCGCCCCTCC............................................................1670.290.29--------------------------------------------------------------------0.29--
...................................TACGAGGAACTAGAG.................................................................................................................................1540.250.25--0.25--------------------------------------------------------------------
........................................................CCGTGGGAGGTGGGC............................................................................................................1560.170.17------------------0.17----------------------------------------------------

Antisense strand
GGGCCGACCCTGAGCTCGTGCTGCTGGGCCGCCGCTACGAGGAACTAGAGGTGAGGCCGTGGGAGGTGGGCTGGGGGCGAGGCCAGAGGCGAGGCCCAGCCTGCTGACCCCGCCCCTCCTCCGCCTCAGCGCATCCCACTCAGTGAAATGACCCGCGAAGAGATCAATGCGCTAGTGCA
...................................................((((((....(((((......(((((((.((.(((((((........)))).))).)).))))))))))))))))))...................................................
..................................................51............................................................................129................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR038855(GSM458538)
D10. (cell line)
GSE20417(GSM514985)
Colon and lung cancer pool.
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR038854(GSM458537)
MM653. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR191512(GSM715622)
163genomic small RNA (size selected RNA from . (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191584(GSM715694)
98genomic small RNA (size selected RNA from t. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................CCAGCCTGCTGACCCCACAG................................................................ 201.000.00-----------------------------------1.00-----------------------------------
............................................................................................................................................................GAAGAGATCAATGCGTTAG.... 191.000.00--------------------------------1.00--------------------------------------
...........................................CTCCCACGGCCTCACCTCTAGT.................................................................................................................. 2211.001.00------------1.00----------------------------------------------------------
..........................................................................................................................GCCTCAGCGCATCCCAGTA...................................... 191.000.00------------------------------------------------------1.00----------------
.............................................................................................................CCGCCCCTCCTCCGCATT.................................................... 181.000.00-----------------------1.00-----------------------------------------------
..................................................................................................................CCTCCTCCGCCTCAGCGAT.............................................. 191.000.00--------------------------------------------------------1.00--------------
.CAGCAGCACGAGCTCAGGGTCGGCC......................................................................................................................................................... 2511.001.00------------------------------1.00----------------------------------------
...............................................................................................................GCCCCTCCTCCGCCTCGG.................................................. 181.000.00------------------------1.00----------------------------------------------
...................................................................................................CCTGCTGACCCCGCCCCAACA........................................................... 211.000.00-------------------1.00---------------------------------------------------
....................................................................................................................................TTCACTGAGTGGGAT................................ 1540.250.25---------------------------------------------------------------------0.25-
..................................................................................................................GCTGAGGCGGAGGAGG................................................. 1670.140.14----------------------------------------------------------------------0.14