ID: uc011aim.1_intron_76_0_chr22_22821312_f.3p
GENE: (77)
chr22:22826863-22827112+


(2)
AGO2.ip
(4)
BRAIN
(2)
BREAST
(12)
CELL-LINE
(1)
HEART
(2)
LIVER
(5)
OTHER

Sense strand
GTGACTTGTCCAGGATCAGGGATGACACACTTCTTTTTCTTGATAGCTATTCTGTCCTCTCCCAGACATTTTTTTTTTTTTTTTAACACTGCTGTCGCCCAGGCAGGAGTGCAGACATGGCTCATTGCAGCCTGAACCTCCTGGGCTCAAATCTCCCACCTCAGGCTCCCAAGTAGCTGGGACCACAGGCATGTGCCACTATGCTTGGCTATTTTTTTTTTTTATGTTTCGTATAGATAGGGTCTCGCTA
......................................................................................((((.(((((.....))))).))))...........................................................................................................................................
............................................................61...........................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787SRR343335SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189785TAX577590(Rovira)
total RNA. (breast)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.................................................................ACATTTTTTTTTTTTTTTTACTCA.................................................................................................................................................................246.000.005.00--1.00----------------------
.................................................................ACATTTTTTTTTTTTTTTTAATTCT................................................................................................................................................................255.000.003.00--2.00----------------------
..................................................................CATTTTTTTTTTTTTTTTAACACAG...............................................................................................................................................................254.000.002.00--1.001.00---------------------
.................................................................ACATTTTTTTTTTTTTTTTAACACAAAG.............................................................................................................................................................282.000.001.00--1.00----------------------
..............................................................................................................................................................................AGCTGGGACCACAGGCATGTGCTCAC..................................................262.000.00--2.00-----------------------
...........................................................................................................................................................................AGTAGCTGGGACCACAGGCATGTGCG.....................................................262.000.00-1.001.00-----------------------
.................................................................ACATTTTTTTTTTTTTTTTATAAG.................................................................................................................................................................241.000.00---1.00----------------------
.........................CACACTTCTTTTTCTTAG...............................................................................................................................................................................................................181.000.00-------1.00------------------
......................................................................TTTTTTTTTTTTTTAACACTCTCT............................................................................................................................................................241.000.00---1.00----------------------
...................................................................ATTTTTTTTTTTTTTTTAACGCT................................................................................................................................................................231.000.00-----1.00--------------------
..........................................................................................................................................................................AAGTAGCTGGGACCACAGGCATGTAAC.....................................................271.000.00-1.00------------------------
.................................................................ACATTTTTTTTTTTTTTTTAAAAT.................................................................................................................................................................241.000.001.00-------------------------
..............................................................................................TCGCCCAGGCAGGAGTGCAGGCGC....................................................................................................................................241.000.00--1.00-----------------------
...........................................................................................................................................................................AGTAGCTGGGACCACAGGCATGTGCCACGCCC...............................................321.000.00--1.00-----------------------
.................................................................ACATTTTTTTTTTTTTTTTACAC..................................................................................................................................................................231.000.00-1.00------------------------
.......................................................................TTTTTTTTTTTTTAACACTGGGGG...........................................................................................................................................................241.000.00-1.00------------------------
.................................................................ACATTTTTTTTTTTTTTTTAACAAAG...............................................................................................................................................................261.000.001.00-------------------------
..............................................................................................TCGCCCAGGCAGGAGTGCCGTA......................................................................................................................................221.000.00----------------------1.00---
....................................................................TTTTTTTTTTTTTTTTAACACCCG..............................................................................................................................................................241.000.00----1.00---------------------
.................................................................ACATTTTTTTTTTTTTTTTAAAAG.................................................................................................................................................................241.000.00----1.00---------------------
.................................................................ACATTTTTTTTTTTTTTTTAACTCTG...............................................................................................................................................................261.000.00-------1.00------------------
.............................................................................................................................................................................TAGCTGGGACCACAGGCATGGGGC.....................................................241.000.00--1.00-----------------------
.....................................................................................................................................................................................ACCACAGGCATGTGCCAC...................................................1801.001.00------------------1.00-------
.................................................................ACATTTTTTTTTTTTTTTTATAT..................................................................................................................................................................231.000.001.00-------------------------
....................................................................TTTTTTTTTTTTTTTTAACACTCCAG............................................................................................................................................................261.000.00----1.00---------------------
..................................................................CATTTTTTTTTTTTTTTTAATATG................................................................................................................................................................241.000.001.00-------------------------
...............................................................................................CGCCCAGGCAGGAGTGCTC........................................................................................................................................191.000.00-----1.00--------------------
...........................................................................................................................................................................AGTAGCTGGGACCACAGGCATGTGCTCCG..................................................291.000.00--1.00-----------------------
.................................................................ACATTTTTTTTTTTTTTTTACTTA.................................................................................................................................................................241.000.001.00-------------------------
.................................................................ACATTTTTTTTTTTTTTTTAAAATG................................................................................................................................................................251.000.00-------1.00------------------
.................................................................ACATTTTTTTTTTTTTTTTAAACTG................................................................................................................................................................251.000.001.00-------------------------
..............................................................................................................................................................................AGCTGGGACCACAGGCATGTGCTACA..................................................261.000.00--1.00-----------------------
.................................................................ACATTTTTTTTTTTTTTTTAACAAAAG..............................................................................................................................................................271.000.001.00-------------------------
.................................................................ACATTTTTTTTTTTTTTTTAGTAG.................................................................................................................................................................241.000.00-1.00------------------------
..............................................................................................TCGCCCAGGCAGGAGTGCAGCGAC....................................................................................................................................241.000.00-1.00------------------------
.................................................................ACATTTTTTTTTTTTTTTTAACACAAGG.............................................................................................................................................................281.000.00---1.00----------------------
...........................................................................................................................................................................AGTAGCTGGGACCACAGGCATCGCC......................................................251.000.00-1.00------------------------
..............................................................................................................................................................................AGCTGGGACCACAGGCATGGGCT.....................................................231.000.00-1.00------------------------
......................................................................TTTTTTTTTTTTTTAACACCTCT.............................................................................................................................................................231.000.00-1.00------------------------
............................ACTTCTTTTTCTTGATACC...........................................................................................................................................................................................................191.000.00--1.00-----------------------
..............................................................................................TCGCCCAGGCAGGAGTGCCAGG......................................................................................................................................221.000.00--------1.00-----------------
..................................................................CATTTTTTTTTTTTTTTTAACAAAG...............................................................................................................................................................251.000.00---1.00----------------------
......................................................................................................................................................................................................................TTTTTTTTTATGTTTCGTTT................201.000.00-----1.00--------------------
.................................................................ACATTTTTTTTTTTTTTTTAATAT.................................................................................................................................................................241.000.001.00-------------------------
.................................................................................................................................................................................................................TATTTTTTTTTTTTATGATGA....................211.000.00---1.00----------------------
..........................................................................................................................................................................AAGTAGCTGGGACCACAGGCATGTATA.....................................................271.000.00-----------------1.00--------
..............................................................................................TCGCCCAGGCAGGAGTGCAGCGGG....................................................................................................................................241.000.00-1.00------------------------
.......................................................................TTTTTTTTTTTTTAACACTCTCT............................................................................................................................................................231.000.001.00-------------------------
...................................................................ATTTTTTTTTTTTTTTTAACGCAG...............................................................................................................................................................241.000.00-1.00------------------------
.............................................................................................................................................................................TAGCTGGGACCACAGGCATGTGCGACC..................................................271.000.00-1.00------------------------
.................................................................ACATTTTTTTTTTTTTTTTATTC..................................................................................................................................................................231.000.00--1.00-----------------------
.....................ATGACACACTTCTTTCT....................................................................................................................................................................................................................171.000.00-----1.00--------------------
.............................................................................................................................................................................................................TGGCTATTTTTTTTTTTTACGGC......................231.000.00-1.00------------------------
..................................................................CATTTTTTTTTTTTTTTTAATCCG................................................................................................................................................................241.000.00----1.00---------------------
................................................................GACATTTTTTTTTTTTTTTCATG...................................................................................................................................................................231.000.00---------------------1.00----
.................................................................ACATTTTTTTTTTTTTTTTAACTTG................................................................................................................................................................251.000.00----1.00---------------------
.......GTCCAGGATCAGGGATG..................................................................................................................................................................................................................................1730.330.33-------------------------0.33
...................................................................ATTTTTTTTTTTTTTTTAACAC.................................................................................................................................................................2260.170.17-----0.17--------------------
...................................................................ATTTTTTTTTTTTTTTTAACACCATG.............................................................................................................................................................2660.170.170.17-------------------------
...................................................................ATTTTTTTTTTTTTTTTAACACGCAG.............................................................................................................................................................2660.170.17-----0.17--------------------

Antisense strand
GTGACTTGTCCAGGATCAGGGATGACACACTTCTTTTTCTTGATAGCTATTCTGTCCTCTCCCAGACATTTTTTTTTTTTTTTTAACACTGCTGTCGCCCAGGCAGGAGTGCAGACATGGCTCATTGCAGCCTGAACCTCCTGGGCTCAAATCTCCCACCTCAGGCTCCCAAGTAGCTGGGACCACAGGCATGTGCCACTATGCTTGGCTATTTTTTTTTTTTATGTTTCGTATAGATAGGGTCTCGCTA
......................................................................................((((.(((((.....))))).))))...........................................................................................................................................
............................................................61...........................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787SRR343335SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189785TAX577590(Rovira)
total RNA. (breast)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.................................................................TGTTAAAAAAAAAAAAAAAATGT.................................................................................................................................................................. 2322.002.00------2.00-------------------
..................................TTTTCTTGATAGCTATGG...................................................................................................................................................................................................... 182.000.00---------2.00----------------
....................................................................................................................................................AAATCTCCCACCTCATATA................................................................................... 192.000.00---------------1.00---1.00------
................................................................GACATTTTTTTTTTTTTTTGTGT................................................................................................................................................................... 231.000.00------1.00-------------------
....................................................................................................................................................AAATCTCCCACCTCATAT.................................................................................... 181.000.00------------1.00-------------
.............................................................................................................................................................................TAGCTGGGACCACAGGCATGTGCCATCTG................................................ 291.000.00-----1.00--------------------
...................................................................................................................................................CAAATCTCCCACCTCTTTT.................................................................................... 191.000.00--------------------1.00-----
...................................................................ATTTTTTTTTTTTTTTTAACAAAA............................................................................................................................................................... 241.000.00----------------1.00---------
...........................................................................................................................................................................................................................................GATAGGGTCTCGCTACCTC 191.000.00--------1.00-----------------
...........................CACTTCTTTTTCTTGCACA............................................................................................................................................................................................................ 191.000.00-----------1.00--------------
..............................................................................................................................................................................AGCTGGGACCACAGGCATTGGG...................................................... 221.000.00--1.00-----------------------
..................................................................................................................................................................................................................ATTTTTTTTTTTTATGTGG..................... 191.000.00------1.00-------------------
..............................................................................................................................................................CCTCAGGCTCCCAAGTAGCTGGGGGA.................................................................. 261.000.00--------------1.00-----------
...........................................................................................................................................................CCACCTCAGGCTCCCAAGTAGCTCGC..................................................................... 261.000.00-1.00------------------------
..........................................................................................................................................................CCCACCTCAGGCTCCCAAGTGGAG........................................................................ 241.000.00--1.00-----------------------
..............................................................................................................................................................................AGCTGGGACCACAGGCATGTGTGGG................................................... 251.000.00-1.00------------------------
...............................................................AGACATTTTTTTTTTTTTTTTCCC................................................................................................................................................................... 241.000.00-------------1.00------------
.................................................................ACATTTTTTTTTTTTTTTTAAGAA................................................................................................................................................................. 241.000.00----------1.00---------------
..................................................................................................................................................TGAGGTGGGAGATTTGA....................................................................................... 1720.500.50------------------------0.50-
..................................................................................................................................................TCAAATCTCCCACCTCATAGT................................................................................... 210.500.00-----------------------0.50--