ID: uc011afc.1_intron_4_0_chr21_45656949_r.3p
GENE: (2)
chr21:45656899-45657148-


(1)
AGO2.ip
(11)
B-CELL
(1)
BREAST
(11)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(29)
SKIN
(1)
XRN.ip

Sense strand
GGGCATCAGCCTCCGAAAACAGATTTTGCACCTTTTGGGCCATTGCAGATACTCAGGAGAAGGAAGTCAGAGCGATGGTAGGCAGCGACGTGGAGCTCAGCTGCGCTTGCCCTGAAGGAAGCCGTTTTGATTTAAATGATGTTTACGTATATTGGCAAACCAGTGAGTCGAAAACCGTGGTGACCTACCACATCCCACAGAACAGCTCCTTGGAAAACGTGGACAGCCGCTACCGGAACCGAGCCCTGAT
.....................................................................(((((......((((((........)))..))).)))))..............................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343334RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040042(GSM532927)
G428N. (cervix)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
SRR343336SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................ACTCAGGAGAAGGAACTC......................................................................................................................................................................................1819.000.004.002.00----3.002.00-1.001.00------1.00-------1.00--1.00------------1.00----1.00--1.00------------------
..................................................ACTCAGGAGAAGGAACT.......................................................................................................................................................................................1716.000.003.005.00-----1.00-2.00---1.002.001.00-1.00--------------------------------------------------
..................................................ACTCAGGAGAAGGAACTCG.....................................................................................................................................................................................1910.000.004.001.00------------------1.00---1.00-1.00------1.00--------1.00-------------------------
.GGCATCAGCCTCCGAA.........................................................................................................................................................................................................................................1617.007.00-----3.00------1.00--------1.00-1.00------------1.00-------------------------------
......................................................................................................................................................................................................................AAACGTGGACAGCCGCTACCGGA.............2314.004.00----4.00---------------------------------------------------------------
.GGCATCAGCCTCCGAAGCTG.....................................................................................................................................................................................................................................2014.007.00--1.00--------2.001.00-------------------------------------------------------
..GCATCAGCCTCCGAA.........................................................................................................................................................................................................................................1592.222.22------------0.110.11----0.22-0.11---------------------------------0.220.220.11-0.110.110.110.110.110.110.110.110.110.11
...........................................................AAGGAAGTCAGAGCGATGGTAGGCAGCGACGTGG.............................................................................................................................................................3412.002.00--2.00-----------------------------------------------------------------
....................................................................AGAGCGATGGTAGGCAGC....................................................................................................................................................................1812.002.00--------1.00-----------------------------------1.00-----------------------
....................................................TCAGGAGAAGGAAGTCAGAGT.................................................................................................................................................................................2112.001.00-----------------------------------1.00---1.00----------------------------
..................................................ACTCAGGAGAAGGAACTT......................................................................................................................................................................................181.000.00---------------1.00----------------------------------------------------
....................................................................................GCGACGTGGAGCTCAGCTGC..................................................................................................................................................2011.001.00-----------1.00--------------------------------------------------------
.........................................................................................................................................................................................TACCACATCCCACAGGAG...............................................181.000.00----------------------------------1.00---------------------------------
.....................................................CAGGAGAAGGAAGTCAGAG..................................................................................................................................................................................1911.001.00------------------------------------------------1.00-------------------
.......................TTTTGCACCTTTTGGAGAA................................................................................................................................................................................................................191.000.00----------------1.00---------------------------------------------------
....................................................TCAGGAGAAGGAAGTCAGAGCGT...............................................................................................................................................................................231.000.00--------1.00-----------------------------------------------------------
...................................................................................AGCGACGTGGAGCTCAGCTGCGCT...............................................................................................................................................2411.001.00--------1.00-----------------------------------------------------------
...............................................................................................................................................................................................................................CAGCCGCTACCGGAACCTCC.......201.000.00---------------------------------------------------1.00----------------
..........................................................................................................................................................GCAAACCAGTGAGTCGA...............................................................................1711.001.00------------------1.00-------------------------------------------------
........................................................................................................................................................TGGCAAACCAGTGAGTCGAAAACCG.........................................................................2511.001.00-----------------------------1.00--------------------------------------
................................................................AGTCAGAGCGATGGTAGGCAG.....................................................................................................................................................................2111.001.00------------------------------1.00-------------------------------------
.......................TTTTGCACCTTTTGGGGTGA...............................................................................................................................................................................................................201.000.00----------------1.00---------------------------------------------------
............................................................AGGAAGTCAGAGCGATGGTA..........................................................................................................................................................................2011.001.00---1.00----------------------------------------------------------------
.GGCATCAGCCTCCGAAGC.......................................................................................................................................................................................................................................1811.007.00-----------------------------------------------1.00--------------------
...............................................GATACTCAGGAGAAGGAAGTCAGAGCGATGGTA..........................................................................................................................................................................3311.001.00--1.00-----------------------------------------------------------------
........................................................................CGATGGTAGGCAGCGACGT...............................................................................................................................................................1911.001.00--------------------------------------1.00-----------------------------
.......................................................................................................................................................................................................................................ACCGGAACCGAGCCCTGA.1811.001.00--------------------------------------------------1.00-----------------
...........................................................AAGGAAGTCAGAGCGATGGTA..........................................................................................................................................................................2111.001.00----------1.00---------------------------------------------------------
.......................................................................................ACGTGGAGCTCAGCTG...................................................................................................................................................1621.001.00-------------1.00------------------------------------------------------
..................................................ACTCAGGAGAAGGAAGT.......................................................................................................................................................................................1711.001.00----------1.00---------------------------------------------------------
.........................................................AGAAGGAAGTCAGAGCGATGGTAGGCAG.....................................................................................................................................................................2811.001.00----------------------------------------1.00---------------------------
............................................................AGGAAGTCAGAGCGATGGTAGG........................................................................................................................................................................2211.001.00-------------------------------------------1.00------------------------
.......................TTTTGCACCTTTTGGAGG.................................................................................................................................................................................................................181.000.00--------------------------------1.00-----------------------------------
..............................................................................................GCTCAGCTGCGCTTGTCTC.........................................................................................................................................191.000.00-------------------1.00------------------------------------------------
...................................................CTCAGGAGAAGGAAGTCAGAG..................................................................................................................................................................................2111.001.00---1.00----------------------------------------------------------------
......................................................AGGAGAAGGAAGTCAGAGC.................................................................................................................................................................................1911.001.00---1.00----------------------------------------------------------------
..................................................ACTCAGGAGAAGGAACTCA.....................................................................................................................................................................................191.000.00-------------------------------------1.00------------------------------
....................................................TCAGGAGAAGGAAGTCAGAG..................................................................................................................................................................................2011.001.00-------------------------------1.00------------------------------------
.............................................................................................................................................................AACCAGTGAGTCGAAAACCGTGGTGAC..................................................................2711.001.00---1.00----------------------------------------------------------------
...............................................................................AGGCAGCGACGTGGAGCTC........................................................................................................................................................1920.500.50----------------------------------------------------0.50---------------
..........................................................................................TGGAGCTCAGCTGCGC................................................................................................................................................1620.500.50-----------------------------------------------------0.50--------------
..GCATCAGCCTCCGAAGCT......................................................................................................................................................................................................................................1890.222.22-------------------0.11-0.11----------------------------------------------
..GCATCAGCCTCCGAAGC.......................................................................................................................................................................................................................................1790.112.22---------------------------------------------------------0.11----------
..GCATCAGCCTCCGAAGCTG.....................................................................................................................................................................................................................................1990.112.22----------------------------------------------------0.11---------------

Antisense strand
GGGCATCAGCCTCCGAAAACAGATTTTGCACCTTTTGGGCCATTGCAGATACTCAGGAGAAGGAAGTCAGAGCGATGGTAGGCAGCGACGTGGAGCTCAGCTGCGCTTGCCCTGAAGGAAGCCGTTTTGATTTAAATGATGTTTACGTATATTGGCAAACCAGTGAGTCGAAAACCGTGGTGACCTACCACATCCCACAGAACAGCTCCTTGGAAAACGTGGACAGCCGCTACCGGAACCGAGCCCTGAT
.....................................................................(((((......((((((........)))..))).)))))..............................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343334RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040042(GSM532927)
G428N. (cervix)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040028(GSM532913)
G026N. (cervix)
SRR343336SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................................................................................ACAGCTCCTTGGAAAAGAA.............................. 191.000.00----------------------1.00---------------------------------------------
......................................................................................................GCGCTTGCCCTGAAGTCA.................................................................................................................................. 181.000.00---------------------------------------------1.00----------------------
........................................................................................................................................................................................................................................CCGGAACCGAGCCCTAGTG 191.000.00---------------------------1.00----------------------------------------