ID: uc011acp.1_intron_14_0_chr21_30444310_r.3p
GENE: (1)
chr21:30444260-30444509-


(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(21)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(18)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGGAATAGACAGAACACTTAGACGTTTAGGGAAGAACTCTTAGCTCAGTGCTTAGTGAGAGAAGCCCCTGAGCCTGGGCTGTTTCCCCCGACCTCTTACTTAGGGGGAAATGCCAGGCTCAGGGACTAACTAGTACAAAGACCCTGAGGAAGGAATGATTTTGACCTGTTTTTTTTTTAAAACAACAACAACAACAACAGGTTGTAGGGCTGAAGCTTACCAAAGAAAGGAAGAATGGTAAGTTCAGAGG
......................................................................................................((..(((((.((...(((((((.((...........)).)))))))...))....)))))..)).(((((......)))))...................................................................
......................................................................................................103.........................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR343334DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................................................AAATGCCAGGCTCAGGGACTAT.........................................................................................................................225.000.00------2.00-----2.00--------------------------1.00---------------
........................................................................................................GGGAAATGCCAGGCTCAGGGA.............................................................................................................................2114.004.00--4.00----------------------------------------------------
............................................................................................................AATGCCAGGCTCAGGGACTTTT........................................................................................................................223.000.00-----3.00-------------------------------------------------
.......................GTTTAGGGAAGAACTCTG.................................................................................................................................................................................................................183.000.00-----------2.00----1.00--------------------------------------
...........................................................................................................AAATGCCAGGCTCAGGGACT...........................................................................................................................2013.003.00---------------------1.00--1.00------------1.00-----------------
........................................................................................................................................................................TTTTTTTTTTAAAACAACATACT...........................................................233.000.00-2.00-----1.00-----------------------------------------------
.........................................................................................................................................................................TTTTTTTTTAAAACAACATACT...........................................................223.000.00-2.00-----1.00-----------------------------------------------
...........................................................................................................................................................................................ACAACAACAACAGGTCTA.............................................183.000.00--------2.00----------------------------------1.00-----------
................................................................................................................................................................................................AACAACAGGTTGTAGGGC........................................1812.002.00--------------2.00----------------------------------------
....................................................................................................................................................................................................ACAGGTTGTAGGGCTGAAGCTACC..............................242.000.002.00------------------------------------------------------
..........................................................................................................GAAATGCCAGGCTCAGGGA.............................................................................................................................1912.002.00----2.00--------------------------------------------------
.........................................................................................................GGAAATGCCAGGCTCAGGGACTAA.........................................................................................................................2412.002.00-------------1.00----------------1.00------------------------
..........................................................................................................GAAATGCCAGGCTCAGGGACTTTT........................................................................................................................2412.001.00---------------2.00---------------------------------------
..........................................................................................................GAAATGCCAGGCTCAGGGAC............................................................................................................................2012.002.00------2.00------------------------------------------------
................................................................................................................................................................................................AACAACAGGTTGTAGGGCTGAA....................................2211.001.00----1.00--------------------------------------------------
..........................................................................................................GAAATGCCAGGCTCAGGGACTAT.........................................................................................................................231.000.00------------------------------------1.00------------------
.................................................................................................................................................................................................ACAACAGGTTGTAGGGCTGA.....................................2011.001.00--------------------------------1.00----------------------
....................................................................................................................................................................................................ACAGGTTGTAGGGCTGAAGCTC................................221.000.001.00------------------------------------------------------
.............................................................................................................................................................ATTTTGACCTGTTTTTTTTTTG.......................................................................221.000.001.00------------------------------------------------------
......................................................................................................................................................................................................AGGTTGTAGGGCTGAAGCTTACCAAAGAAAGGA...................3311.001.00-------------------1.00-----------------------------------
.........................................................................................................................................................................TTTTTTTTTAAAACAACAAATTC..........................................................231.000.00------------------1.00------------------------------------
...........................................................................................................AAATGCCAGGCTCAGGGACA...........................................................................................................................2011.001.00----------------------------1.00--------------------------
..............................................................................................................................................................................TTTTAAAACAACAACCTTT.........................................................191.000.00-----------------1.00-------------------------------------
.............................................................................................................ATGCCAGGCTCAGGGACTAACCAG.....................................................................................................................241.000.001.00------------------------------------------------------
.......................................................................GCCTGGGCTGTTTCCCCCCCG..............................................................................................................................................................211.000.00-------------------------------1.00-----------------------
....................................................................................................................................................................................................ACAGGTTGTAGGGCTGAAGC..................................2011.001.00-------------1.00-----------------------------------------
..................TAGACGTTTAGGGAAGAACTCT..................................................................................................................................................................................................................2211.001.00-----1.00-------------------------------------------------
..................................................................CCTGAGCCTGGGCTGTTGCTC...................................................................................................................................................................211.000.00----------------------------------------------1.00--------
.........................................................................................................................................................................TTTTTTTTTAAAACAACATACA...........................................................221.000.00-1.00-----------------------------------------------------
...........GAACACTTAGACGTTTAGGGA..........................................................................................................................................................................................................................2111.001.00----------1.00--------------------------------------------
..........................................................GAGAAGCCCCTGAGCCTGG.............................................................................................................................................................................1911.001.00-----------------------------------------1.00-------------
.....................................................................................................AGGGGGAAATGCCAGGCTCAGGGACCAAC........................................................................................................................291.000.00---1.00---------------------------------------------------
..................TAGACGTTTAGGGAAG........................................................................................................................................................................................................................1611.001.00-------------------------1.00-----------------------------
.............................................................................................................ATGCCAGGCTCAGGGACT...........................................................................................................................1811.001.00---------1.00---------------------------------------------
.........................................................................................................................................................................TTTTTTTTTAAAACAACAACAACAACAACAG..................................................3111.001.00--------------------1.00----------------------------------
................................................................................................................................................................TTGACCTGTTTTTTTTTTGAG.....................................................................211.000.00---1.00---------------------------------------------------
..................................................................................................................................................AGGAAGGAATGATTTTGACCTGTTTTTTTTTC........................................................................321.000.00---1.00---------------------------------------------------
............AACACTTAGACGTTTAGGGAAGAACTCTTAG...............................................................................................................................................................................................................3111.001.00---------1.00---------------------------------------------
.....................................................................................................AGGGGGAAATGCCAGGCTCAGGGACC...........................................................................................................................261.000.00---1.00---------------------------------------------------
.............................................................................................................ATGCCAGGCTCAGGGACTAACTAGCAC..................................................................................................................271.000.001.00------------------------------------------------------
...........................................................................................................AAATGCCAGGCTCAGGGAC............................................................................................................................1911.001.00---------------------------------------------1.00---------
.................................................................................................................................................................................................ACAACAGGTTGTAGGGCTGAAGC..................................2311.001.00----1.00--------------------------------------------------
...........................................................................................................AAATGCCAGGCTCAGGGACTAACC.......................................................................................................................241.000.00-----------------------------1.00-------------------------
............................GGGAAGAACTCTTAGCTCAGTG........................................................................................................................................................................................................2211.001.00-----1.00-------------------------------------------------
..............CACTTAGACGTTTAGGGAAGAACTCTG.................................................................................................................................................................................................................271.000.00----------1.00--------------------------------------------
........................................................................................................................................................................TTTTTTTTTTAAAACAACATAC............................................................221.000.00-1.00-----------------------------------------------------
................CTTAGACGTTTAGGGAAGAACTCTG.................................................................................................................................................................................................................251.000.00----------------1.00--------------------------------------
.............................................................AAGCCCCTGAGCCTGGGCTGTTTCCCCCG................................................................................................................................................................2911.001.00----------------------------------1.00--------------------
.........................................................................................................................................................AATGATTTTGACCTGTTTTTTTTT.........................................................................2411.001.001.00------------------------------------------------------
.............ACACTTAGACGTTTAGGGAAGA.......................................................................................................................................................................................................................2211.001.00----1.00--------------------------------------------------
...............ACTTAGACGTTTAGGGAAG........................................................................................................................................................................................................................1911.001.00---------------------------------1.00---------------------
...AATAGACAGAACACTTAGACG..................................................................................................................................................................................................................................2111.001.00-------------------------------------------------1.00-----
........................................................................................................GGGAAATGCCAGGCTCATGGA.............................................................................................................................211.000.00--1.00----------------------------------------------------
................................................................CCCCTGAGCCTGGGCTGTTTCCCA..................................................................................................................................................................241.000.00---------------------------1.00---------------------------
..............................................................................................................................................................................................ACAACAACAGGTTGTAGGG.........................................1911.001.00--------------------------------------1.00----------------
..........................................................................................................GAAATGCCAGGCTCAGGGACT...........................................................................................................................2111.001.00------------------------------------------1.00------------
..........................................................................................................................................................................TTTTTTTTAAAACAACAACAACAACAACAG..................................................3011.001.00-------1.00-----------------------------------------------
........................TTTAGGGAAGAACTCTTAGC..............................................................................................................................................................................................................2011.001.00------------------------------------------------1.00------
.............................................................................................................................................................................................AACAACAACAGGTTGTAGGGCTGAAGCT.................................2811.001.00----------------------------------------1.00--------------
..GAATAGACAGAACACTTAGACG..................................................................................................................................................................................................................................2211.001.00--------------------------------------------1.00----------
..........................................................................................................................................................................TTTTTTTTAAAACAACAACAACAACAAC....................................................2820.500.50------------------0.50------------------------------------
...........................................................................................................................................................................TTTTTTTAAAACAACAACAACAACAACA...................................................2830.330.33--------------------0.33----------------------------------

Antisense strand
AGGAATAGACAGAACACTTAGACGTTTAGGGAAGAACTCTTAGCTCAGTGCTTAGTGAGAGAAGCCCCTGAGCCTGGGCTGTTTCCCCCGACCTCTTACTTAGGGGGAAATGCCAGGCTCAGGGACTAACTAGTACAAAGACCCTGAGGAAGGAATGATTTTGACCTGTTTTTTTTTTAAAACAACAACAACAACAACAGGTTGTAGGGCTGAAGCTTACCAAAGAAAGGAAGAATGGTAAGTTCAGAGG
......................................................................................................((..(((((.((...(((((((.((...........)).)))))))...))....)))))..)).(((((......)))))...................................................................
......................................................................................................103.........................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR343334DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................TGAGCTAAGAGTTCTTCCC........................................................................................................................................................................................................... 1911.001.00-----------------------------------------------1.00-------
..TAAGTGTTCTGTCTATTC...................................................................................................................................................................................................................................... 1811.001.00--------------------------1.00----------------------------
................................................................................................................................................................TTGACCTGTTTTTTTTTTAC...................................................................... 201.000.00-----------------------------------1.00-------------------
..................................................................................................................................................................................AAAACAACAACAACAACAACAGGTGGT............................................. 271.000.00---1.00---------------------------------------------------
...TAAGTGTTCTGTCTATT...................................................................................................................................................................................................................................... 1711.001.00----------------------1.00--------------------------------
.............................................................................................................................................................................................................................AAAGAAAGGAAGAATGTTTG......... 201.000.00-----------------1.00-------------------------------------
....TAAGTGTTCTGTCTAT...................................................................................................................................................................................................................................... 1650.600.60---------------------------------------------------0.200.200.20-
............................CTAAGAGTTCTTCCC............................................................................................................................................................................................................... 1520.500.50--------------------------------------------------0.50----
..................................................................................AAGAGGTCGGGGGAA......................................................................................................................................................... 1540.250.25------------------0.25------------------------------------
............................................................CCAGGCTCAGGGGCTTC............................................................................................................................................................................. 1770.140.14------------------------------------------------------0.14