ID: uc011abk.1_intron_1_0_chr20_62500718_f.5p
GENE: (2)
chr20:62500668-62500917+


(3)
AGO2.ip 		(2)
BRAIN 		(4)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(3)
LIVER 		(3)
OTHER 		(2)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TAACAAAGGTCTGCTGTCTGACTCCATGACGGATGTTCCTGTCGACACAGGTGTGGCTGCCCGGACTCCTGCTGTTGAGGGTCTGACAGAGGCTGAGGAGGAGGAGCTCAGGGCTGAGCTTACCAAGGTGCTGTGGCTTGGCTGTCTGTCCTGGGGTGAATTGGAGTTAAGGCCCTCTTGGATTAGTGAGAGGCCAGGGTACTGGCCACGCTCGGGAGGAATTGCCCTGGGTGGTCACCTACCCTGCTCT
....................................................((.((.((((.(((((((.((.((.((..((.....))..)).)).)).))))).)).))))..(((..((....))))))).)).................................................................................................................
..................................................51.....................................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
...................................................................................................................GAGCTTACCAAGGTGACGA....................................................................................................................195.000.00----5.00----------------------------------------
.............................................................................................................AGGGCTGAGCTTACCAAGGTGGAAG....................................................................................................................253.000.002.001.00-------------------------------------------
..................................................................TCCTGCTGTTGAGGGTCTGACAGAGGCTGAG.........................................................................................................................................................3112.002.00--2.00------------------------------------------
......................................................................................CAGAGGCTGAGGAGGAGGAGCTCAGGGCTG......................................................................................................................................3012.002.00---------2.00-----------------------------------
.......................................................................................AGAGGCTGAGGAGGACGC.................................................................................................................................................182.000.00----------------------------------1.00-----1.00----
............................................................................................................CAGGGCTGAGCTTACCAAGGTGGAA.....................................................................................................................252.000.002.00--------------------------------------------
......AGGTCTGCTGTCTGACTCCATGACGG..........................................................................................................................................................................................................................2612.002.00--1.00-----------1.00------------------------------
...........................................................................TGAGGGTCTGACAGAGGCTGAGGAGG.....................................................................................................................................................2621.501.501.50--------------------------------------------
.................................................................................................GAGGAGGAGCTCAGGGCTGAG....................................................................................................................................2111.001.00---1.00-----------------------------------------
.......................................................................................AGAGGCTGAGGAGGAGGAGCCCAG...........................................................................................................................................241.000.00--1.00------------------------------------------
.....................................................................................ACAGAGGCTGAGGAGGAGGAGCT..............................................................................................................................................2311.001.00--------------------------------------1.00------
......AGGTCTGCTGTCTGACGCTT................................................................................................................................................................................................................................201.000.00-----------------------------------1.00---------
.......................................TGTCGACACAGGTGTGGC.................................................................................................................................................................................................1811.001.00---------------------1.00-----------------------
........................................................................TGTTGAGGGTCTGACAGAGGCTGAGT........................................................................................................................................................261.000.001.00--------------------------------------------
...............................................................GACTCCTGCTGTTGAGGG.........................................................................................................................................................................1811.001.00--------------------------1.00------------------
...........TGCTGTCTGACTCCATGACGGATGTT.....................................................................................................................................................................................................................2611.001.001.00--------------------------------------------
.................................................GGTGTGGCTGCCCGGACTCCTGCTGTTGAGG..........................................................................................................................................................................3111.001.00-1.00-------------------------------------------
................................................................................................GGAGGAGGAGCTCAGGGCTGAG....................................................................................................................................2211.001.00---1.00-----------------------------------------
......AGGTCTGCTGTCTGACTCCATGACGGA.........................................................................................................................................................................................................................2711.001.00-----------------------------------------1.00---
......................................................GGCTGCCCGGACTCCTGC..................................................................................................................................................................................1811.001.00-----1.00---------------------------------------
.............................................................................................................................................CTGTCTGTCCTGGGGAGA...........................................................................................181.000.00---------------------------------------1.00-----
.................................................................................................GAGGAGGAGCTCAGGGCTG......................................................................................................................................1911.001.00-------------------------------1.00-------------
.....................................................................TGCTGTTGAGGGTCTGACAGAGGCTGAGGAGGAG...................................................................................................................................................3411.001.00-1.00-------------------------------------------
..........................................................................................................................................TGGCTGTCTGTCCTGGGGGGC...........................................................................................211.000.00---------------------------1.00-----------------
........................................GTCGACACAGGTGTGGCTGC..............................................................................................................................................................................................2011.001.00--------1.00------------------------------------
............GCTGTCTGACTCCATGAC............................................................................................................................................................................................................................1811.001.00------1.00--------------------------------------
......................................................................GCTGTTGAGGGTCTGACAGATGC.............................................................................................................................................................231.000.00----------------------1.00----------------------
.....................................................................................ACAGAGGCTGAGGAGCAA...................................................................................................................................................181.000.00------------------------------1.00--------------
.....................................................TGGCTGCCCGGACTCCTGCTGTTGAGGGTCCG.....................................................................................................................................................................321.000.00--1.00------------------------------------------
..................................................GTGTGGCTGCCCGGACTCCTG...................................................................................................................................................................................2111.001.00--------------------1.00------------------------
.......................................................................................AGAGGCTGAGGAGGACTCA................................................................................................................................................191.000.00------------------1.00--------------------------
...........................................................................TGAGGGTCTGACAGAGGCTGAGGAGGAG...................................................................................................................................................2811.001.00------1.00--------------------------------------
.............................................................................AGGGTCTGACAGAGGCTGAGGAGGAGGAGC...............................................................................................................................................3011.001.00------1.00--------------------------------------
..................................................GTGTGGCTGCCCGGACTCCTGCTGTTGAGGGT........................................................................................................................................................................3211.001.00-1.00-------------------------------------------
............GCTGTCTGACTCCATGACG...........................................................................................................................................................................................................................1911.001.00---------------------------------1.00-----------
.............................................................................................TGAGGAGGAGGAGCTCAGGGCTGA.....................................................................................................................................2411.001.00-----1.00---------------------------------------
......................................................................GCTGTTGAGGGTCTGGTA..................................................................................................................................................................181.000.00--------------------------------1.00------------
.....................................................................TGCTGTTGAGGGTCTGACAGAGGCTGAGGAGGA....................................................................................................................................................3321.001.00-1.00-------------------------------------------
.........................................................................................AGGCTGAGGAGGAGGAGCTCAGGGCTGAGCT..................................................................................................................................3111.001.00----------1.00----------------------------------
.....AAGGTCTGCTGTCTGACTCCATGACG...........................................................................................................................................................................................................................2611.001.00-------------1.00-------------------------------
............GCTGTCTGACTCCATGACGGATGTTTC...................................................................................................................................................................................................................271.000.00------------------------------------1.00--------
..ACAAAGGTCTGCTGTCTGA.....................................................................................................................................................................................................................................1911.001.00----------1.00----------------------------------
.AACAAAGGTCTGCTGTCTGACTCCATGACGG..........................................................................................................................................................................................................................3111.001.00--------1.00------------------------------------
......................................................................................CAGAGGCTGAGGAGGAGGAGCTCAG...........................................................................................................................................2511.001.00-----------------------------1.00---------------
.....................................CCTGTCGACACAGGTGTGGCTGCCCGG..........................................................................................................................................................................................2711.001.00------------------------1.00--------------------
...........................................................................TGAGGGTCTGACAGAGGCTGAGGAGGAGGAG................................................................................................................................................3111.001.00---1.00-----------------------------------------
........................................................................TGTTGAGGGTCTGACAGAGGC.............................................................................................................................................................2121.001.001.00--------------------------------------------
...................................................................................TGACAGAGGCTGAGGAGGAGGAGCCC.............................................................................................................................................261.000.00--1.00------------------------------------------
.....................................................................TGCTGTTGAGGGTCTGACAGAGGCTGAGGAGGAGG..................................................................................................................................................3511.001.00-1.00-------------------------------------------
............................ACGGATGTTCCTGTCGACACAGGTGTGGCTGC..............................................................................................................................................................................................3211.001.00----------------------------1.00----------------
.................................................................................TCTGACAGAGGCTGAGGAGGAGGAGCT..............................................................................................................................................2711.001.00---1.00-----------------------------------------
........................................................................TGTTGAGGGTCTGACAGA................................................................................................................................................................1821.001.00------------1.00--------------------------------
.....................................................................TGCTGTTGAGGGTCTGACAGAGGC.............................................................................................................................................................2421.001.001.00--------------------------------------------
...........................................................................................................TCAGGGCTGAGCTTACCAAGGTGG.......................................................................................................................241.000.00-------------------1.00-------------------------
.........TCTGCTGTCTGACTCCATGACGGATGTT.....................................................................................................................................................................................................................2811.001.00-------------------------1.00-------------------
..................................................................................................AGGAGGAGCTCAGGGCCAA.....................................................................................................................................191.000.00-----------1.00---------------------------------
.................................................GGTGTGGCTGCCCGGACTCCTGC..................................................................................................................................................................................2311.001.00-1.00-------------------------------------------
........................................................................TGTTGAGGGTCTGACAGAGGCTGAGGAGGAGG..................................................................................................................................................3211.001.00---1.00-----------------------------------------
.............................................................................................................AGGGCTGAGCTTACCAAGGTGGA......................................................................................................................231.000.00-------1.00-------------------------------------
............................ACGGATGTTCCTGTCGA.............................................................................................................................................................................................................1711.001.00----------------1.00----------------------------
................TCTGACTCCATGACGGATGTTCCTGTC...............................................................................................................................................................................................................2711.001.001.00--------------------------------------------
.....AAGGTCTGCTGTCTGACTCCATGACGGA.........................................................................................................................................................................................................................2811.001.00-------1.00-------------------------------------
..........................................................................TTGAGGGTCTGACAGAGGCTG...........................................................................................................................................................2120.500.50------------------------------------------0.50--
................TCTGACTCCATGACGG..........................................................................................................................................................................................................................1620.500.50-----0.50---------------------------------------
............................................................................GAGGGTCTGACAGAGGCTGAGGA.......................................................................................................................................................2320.500.50-0.50-------------------------------------------
.....................................................................TGCTGTTGAGGGTCTGACAGAGGCTGAGGAGG.....................................................................................................................................................3220.500.50-0.50-------------------------------------------
........................................................................TGTTGAGGGTCTGACAGAG...............................................................................................................................................................1920.500.500.50--------------------------------------------
....................................................................CTGCTGTTGAGGGTCTGACAGAGGCTGAGGAGG.....................................................................................................................................................3320.500.50-0.50-------------------------------------------
...........................................................................TGAGGGTCTGACAGAGGCTGAGGAGGA....................................................................................................................................................2720.500.500.50--------------------------------------------
......................................................................GCTGTTGAGGGTCTGACAGAGGCTG...........................................................................................................................................................2520.500.50-----0.50---------------------------------------
.....................................................................TGCTGTTGAGGGTCTGACAGAGGCTGAGGA.......................................................................................................................................................3020.500.50-0.50-------------------------------------------
............................................................................GAGGGTCTGACAGAGGCTGAGG........................................................................................................................................................2220.500.50-------0.50-------------------------------------
.....AAGGTCTGCTGTCTGAC....................................................................................................................................................................................................................................1720.500.50------------0.50--------------------------------
..................................................................................CTGACAGAGGCTGAGGAGGAG...................................................................................................................................................2120.500.50-----------0.50---------------------------------
..................................................................................CTGACAGAGGCTGAGGAGGA....................................................................................................................................................2030.330.33-0.33-------------------------------------------
...........................................................................TGAGGGTCTGACAGAGGC.............................................................................................................................................................1830.330.33-----0.33---------------------------------------
................................................................ACTCCTGCTGTTGAGG..........................................................................................................................................................................1630.330.33-------------0.33-------------------------------
.....AAGGTCTGCTGTCTG......................................................................................................................................................................................................................................1560.170.17-------------------------------------------0.17-
.....................................................................................................AGGAGCTCAGGGCTGAG....................................................................................................................................1770.140.14--------------------------------------------0.14

Antisense strand
TAACAAAGGTCTGCTGTCTGACTCCATGACGGATGTTCCTGTCGACACAGGTGTGGCTGCCCGGACTCCTGCTGTTGAGGGTCTGACAGAGGCTGAGGAGGAGGAGCTCAGGGCTGAGCTTACCAAGGTGCTGTGGCTTGGCTGTCTGTCCTGGGGTGAATTGGAGTTAAGGCCCTCTTGGATTAGTGAGAGGCCAGGGTACTGGCCACGCTCGGGAGGAATTGCCCTGGGTGGTCACCTACCCTGCTCT
....................................................((.((.((((.(((((((.((.((.((..((.....))..)).)).)).))))).)).))))..(((..((....))))))).)).................................................................................................................
..................................................51.....................................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
..............................................................................................................................................TGTCTGTCCTGGGGTCTTG......................................................................................... 191.000.00-------------------------------------1.00-------
.................................................................................................................................................CTGTCCTGGGGTGAAGCT....................................................................................... 181.000.00-----------------1.00---------------------------
..............................................................................................GAGGAGGAGGAGCTCAGGG......................................................................................................................................... 191.000.00-----------------------1.00---------------------
............................................................................................................................AAGGTGCTGTGGCTTATG............................................................................................................ 181.000.00---------------1.00-----------------------------