ID: uc010zzr.1_intron_9_0_chr20_57288600_f
GENE: (10)
chr20:57288550-57289022+


(1)
AGO2.ip
(2)
B-CELL
(4)
BRAIN
(4)
BREAST
(9)
CELL-LINE
(7)
CERVIX
(3)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(6)
SKIN

Sense strand
ACCTGGGGGCCGACATCATCCTGGACATGGCCACCCTGACCGGGGCTCAGGTGAGTGCTCCCTGGATCCACCCCTTAGCTGTAGTCCCAGGGAACCCCACCCCACTCTTGACCTCAAGGTGGGGAAGGCAGCGCGTGGGGGCTGCCGTCAGGAAGTTTTCATAACTGGGCACGAGGAGGCAGGAGGAGCTGCCCGTCAAGCTTGGTGTGGGCAGTACCGAGGCCCAGGCTGGATGCAGAGCCGGGAACCGCCTCCTGTGTGCTTCATGGCCATGGTCCTTTCTGCCTGTGTTTTTTCTTTTTTTCTCAACCGTCTCTTTTCTGGCTCCCTTATTTCTCTGTCTGCCTCCCGGTCCCTCTTTTGCCTTGGGTGTTTCTCTCCTGCCGTCCCGTCCACACGCTTCCCGGGTTCCTGCCCGCCCAGGGCATTGCCACAGGGAAGTACCACGCCGCGGTGCTCACCAACAGCGCTGA
......................................................................................................................................................................((((((((((((((.((.((.((((((((.((.......)))))))))).))....(((.((((........)))))))..))))))))).)))))))((((((...((.....)).))).))).......................................................................................................................................................................................
...........................................................................................................................................................156...........................................................................................................................................................314.............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR029124(GSM416753)
HeLa. (hela)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532880(GSM532880)
G659T. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040039(GSM532924)
G531T. (cervix)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR040024(GSM532909)
G613N. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................................................................................................................................................................................TGTTTTTTCTTTTTTTCTAAGT...................................................................................................................................................................2229.000.0025.002.002.00--------------------------------------
..............................................................................................................................................................................................................................................................................................TGTGTTTTTTCTTTTTTTCTAAGT...................................................................................................................................................................245.000.005.00----------------------------------------
................................................................................................................................................................ATAACTGGGCACGAGGAGGC.....................................................................................................................................................................................................................................................................................................2012.002.00-----2.00-----------------------------------
..................................CCTGACCGGGGCTCAGGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00---------------------------1.00-------------
...........................................................................................................................................................................................................................................................................................................................................................CCCGGTCCCTCTTTTGCCTTGGGTGT....................................................................................................2611.001.00-------1.00---------------------------------
...............................................................................................................................................................................................................................................................................................GTGTTTTTTCTTTTTTTCTAAGT...................................................................................................................................................................231.000.001.00----------------------------------------
....................................................................CACCCCTTAGCTGTAGTCCCAGGGA............................................................................................................................................................................................................................................................................................................................................................................................2511.001.00--------------------1.00--------------------
......................................................................................................................................................................................................................TACCGAGGCCCAGGCTGGATGC.............................................................................................................................................................................................................................................2211.001.00--------------1.00--------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGGAAGTACCACGGA.......................211.000.00-----------1.00-----------------------------
....................................................................................................................................................CAGGAAGTTTTCATATTG...................................................................................................................................................................................................................................................................................................................181.000.00------------------1.00----------------------
..............................................................................................................................................................................................................................................................................................TGTGTTTTTTCTTTTTTTCTCTTGG..................................................................................................................................................................251.000.00-1.00---------------------------------------
................................................................................................................................................................................................................................................................................................TGTTTTTTCTTTTTTTCTGGTT...................................................................................................................................................................221.000.00-1.00---------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGGAAGTACCACGGAG......................201.000.00-------------------------1.00---------------
..................................................................TCCACCCCTTAGCTGTAG.....................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------------------1.00-------
.....................................................................................................................GGTGGGGAAGGCAGCGA...................................................................................................................................................................................................................................................................................................................................................171.000.00-1.00---------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGGAAGTACCACGGATA.....................231.000.00---------------1.00-------------------------
................................................................................................................................................................................................................................................................................................TGTTTTTTCTTTTTTTCAAGT....................................................................................................................................................................211.000.001.00----------------------------------------
..............................................................................................................................................................................................................................................................................................................................................TCTCTGTCTGCCTCCCGG.........................................................................................................................1811.001.00----1.00------------------------------------
.........................................................................CTTAGCTGTAGTCCCAGGGA............................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------------------1.00--------
..........CGACATCATCCTGGACATGGCCACCCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00------1.00----------------------------------
...........................................................CCCTGGATCCACCCCTTAGCTGTA......................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-------------------------------1.00---------
.................................................................................................................................................................................................................GGCAGTACCGAGGCCGGTC.....................................................................................................................................................................................................................................................191.000.00----------------------1.00------------------
..............................................................................................................................................................................................................................................................................................TGTGTTTTTTCTTTTAGTC........................................................................................................................................................................191.000.00--1.00--------------------------------------
.................................CCCTGACCGGGGCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................161.000.00----------------1.00------------------------
...................................................................................................................................................................................................................................................................................................TTTTTCTTTTTTTCTCACTG..................................................................................................................................................................201.000.001.00----------------------------------------
....................................................................................................................................................................CTGGGCACGAGGAGGCCGG..................................................................................................................................................................................................................................................................................................191.000.00-------------------1.00---------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................TCCACACGCTTCCCGGGTTCCTGCCC........................................................2611.001.00--------------------------1.00--------------
.............................................................................GCTGTAGTCCCAGGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------1.00-------------------
........................................................................CCTTAGCTGTAGTCCCAGGGAACCC........................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----------------------------1.00------------
...................................................................................................................................................................................................................................GCTGGATGCAGAGCCGGGAACCGCCCA...........................................................................................................................................................................................................................271.000.00-----------------------------1.00-----------
....................................................................................................................................................................................................................................................................................................TTTTCTTTTTTTCTCGGCG..................................................................................................................................................................191.000.00--1.00--------------------------------------
....................................................................................................................................................................................................................................................................................................TTTTCTTTTTTTCTCACTTG.................................................................................................................................................................201.000.00----------------------------------1.00------
..................................................GTGAGTGCTCCCTGGATC.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----1.00------------------------------------
.................................................................................................................................................................................................CGTCAAGCTTGGTGTGGGC.....................................................................................................................................................................................................................................................................1911.001.00------------------------------1.00----------
..............................................................................................................................................................................................................................................................................................TGTGTTTTTTCTTTTTTTAAGT.....................................................................................................................................................................221.000.001.00----------------------------------------
................................................................................................................................................................................................................................................................................................TGTTTTTTCTTTTTTTCTAAGC...................................................................................................................................................................221.000.001.00----------------------------------------
................................................................................................................................................................................................................................................................................................TGTTTTTTCTTTTTTTCTCAAGT..................................................................................................................................................................231.000.001.00----------------------------------------
................CATCCTGGACATGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1560.170.17----------------------------------------0.17

Antisense strand
ACCTGGGGGCCGACATCATCCTGGACATGGCCACCCTGACCGGGGCTCAGGTGAGTGCTCCCTGGATCCACCCCTTAGCTGTAGTCCCAGGGAACCCCACCCCACTCTTGACCTCAAGGTGGGGAAGGCAGCGCGTGGGGGCTGCCGTCAGGAAGTTTTCATAACTGGGCACGAGGAGGCAGGAGGAGCTGCCCGTCAAGCTTGGTGTGGGCAGTACCGAGGCCCAGGCTGGATGCAGAGCCGGGAACCGCCTCCTGTGTGCTTCATGGCCATGGTCCTTTCTGCCTGTGTTTTTTCTTTTTTTCTCAACCGTCTCTTTTCTGGCTCCCTTATTTCTCTGTCTGCCTCCCGGTCCCTCTTTTGCCTTGGGTGTTTCTCTCCTGCCGTCCCGTCCACACGCTTCCCGGGTTCCTGCCCGCCCAGGGCATTGCCACAGGGAAGTACCACGCCGCGGTGCTCACCAACAGCGCTGA
......................................................................................................................................................................((((((((((((((.((.((.((((((((.((.......)))))))))).))....(((.((((........)))))))..))))))))).)))))))((((((...((.....)).))).))).......................................................................................................................................................................................
...........................................................................................................................................................156...........................................................................................................................................................314.............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR029124(GSM416753)
HeLa. (hela)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532880(GSM532880)
G659T. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR040039(GSM532924)
G531T. (cervix)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR040024(GSM532909)
G613N. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................................................................................................................................................................................................................................................................................CGTCCCGTCCACACGCTC....................................................................... 183.000.00---3.00-------------------------------------
...............TCATCCTGGACATGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 182.000.00-----------------1.00------1.00----------------
.........................................................................................................................................................................................................................................................................................................TTTTTTTCTCAACCGAAAA............................................................................................................................................................. 191.670.00----------1.00------------------------0.33--0.33--
..............................................................................................CCCCACCCCACTCTTACTC........................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-1.00---------------------------------------
...............TCATCCTGGACATGGCAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00--------1.00--------------------------------
........................................................................................................................GGGGAAGGCAGCGCGCGCC.............................................................................................................................................................................................................................................................................................................................................. 191.000.00---------1.00-------------------------------
...................................................................................................................................................................................................................................................................................................................................................GTCTGCCTCCCGGTCCCTCCC................................................................................................................. 211.000.00-------------1.00---------------------------
............................................................................................................................................................................................................................................AGAGCCGGGAACCGCTG............................................................................................................................................................................................................................ 171.000.00-----------------------1.00-----------------
..............................................................................................................................................................................GGAGGCAGGAGGAGCGCCT........................................................................................................................................................................................................................................................................................ 191.000.00------------1.00----------------------------
.........................................................................................................................................................................................................................................................................................................CGGTTGAGAAAAAAA................................................................................................................................................................. 1530.330.33------------------------------------0.33----
.........................................................................................................................................................................................................................................................................................................TTTTTTTCTCAACCGAACA............................................................................................................................................................. 190.330.00-------------------------------------0.33---
.........................................................................................................................................................................................................................................................................................................TTTTTTTCTCAACCGAAA.............................................................................................................................................................. 180.330.00---------------------------------------0.33-