ID: uc010zzg.1_intron_3_0_chr20_55072725_r.5p
GENE: GCNT7(4)
chr20:55078911-55079160-


(2)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(8)
CELL-LINE
(1)
CERVIX
(2)
HEART
(6)
LIVER
(2)
OTHER
(12)
SKIN

Sense strand
GCCCTGACACCGCCAGGACTCCCCCTCCAGGAACCAGGGGGCTTCTCCTGGTAAGCGTCTCAATAGCTATGCAGGACCCACCAATGGCAAAGGTTAAGCAGGTATATGTGCATGTGCGTGTGTGTGCGTGTGTGTGTGTGTCAGGGTCTCACTTTGTCACCCAGGCTGGAGTGTGGCAGTGCAATCTCAGCTCACTGCAACCTCTGCCTCCTGATTTCAAGCGATTCTCCTGCCTCAGGCTCCAGAGTAG
.....................................................................................................................((((((..((....((.((.(((.(((((.....))))).))).)).))....))...))).)))....................................................................
.....................................................................................................................118..............................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189782SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
....................................................................................................................................................................................................................GATTTCAAGCGATTCTAGGC..................2018.000.00--3.00---1.00-2.00-2.002.00-1.001.00-1.00-1.00-1.001.00-------1.00--1.00------
..........................................................................................................................................................TGTCACCCAGGCTGGAGTGTGCGGC.......................................................................258.000.006.002.00-------------------------------------
............................................................................................................................................................TCACCCAGGCTGGAGTGTGCGGC.......................................................................234.000.003.001.00-------------------------------------
......................................................................................................................................................................TGGAGTGTGGCAGTGGTGT.................................................................193.000.00---3.00-----------------------------------
..............................................................................................................................CGTGTGTGTGTGTGTC............................................................................................................1603.003.00----3.00----------------------------------
..............................................................................................................................................................ACCCAGGCTGGAGTGTGGGCAC......................................................................222.000.002.00--------------------------------------
............................................................................................................................................................TCACCCAGGCTGGAGTGTGGCGACG.....................................................................252.000.002.00--------------------------------------
..............................................................................................................................................................ACCCAGGCTGGAGTGTGGCAACGC....................................................................242.000.00-2.00-------------------------------------
..........................................................................................................................TGTGCGTGTGTGTGTGTGTCAGCC........................................................................................................241.000.001.00--------------------------------------
..........................................................................................................................................................................................................................AAGCGATTCTCCTGCCTCAGGCGCG.......251.000.00-1.00-------------------------------------
............................................................................................................................................................TCACCCAGGCTGGAGTGTGGCGCG......................................................................241.000.001.00--------------------------------------
.........................................................................................................................................................TTGTCACCCAGGCTGGAGA..............................................................................191.000.00-----------------------1.00---------------
.........................................................................................................................................................TTGTCACCCAGGCTGGAGTGTGCGGC.......................................................................261.000.001.00--------------------------------------
..........................................................................................................................................................TGTCACCCAGGCTGGAGTGTGGCGACG.....................................................................271.000.001.00--------------------------------------
........................................................................................................................TGTGTGCGTGTGTGTGTGTGGGGC..........................................................................................................241.000.00-1.00-------------------------------------
.................................................................................................................................................................CAGGCTGGAGTGTGGCAGGG.....................................................................201.000.00------1.00--------------------------------
.......................................................................................................................................................................................ATCTCAGCTCACTGCAACCTCTGCCTCCTCCG...................................321.000.001.00--------------------------------------
................................................................................................................................................................................................CACTGCAACCTCTGCCTCCTGA....................................2201.001.00-------------------------------1.00-------
...............................................................................................................................................................................................................................ATTCTCCTGCCTCAGGCTCTAAA....231.000.00-----1.00---------------------------------
..............................................................................................................................................................ACCCAGGCTGGAGTGTGGGTG.......................................................................211.000.00-1.00-------------------------------------
.......................................GGCTTCTCCTGGTAAGTG.................................................................................................................................................................................................181.000.00-----------------------------------1.00---
..............................................................................................................................................AGGGTCTCACTTTGTCACCCAGGCTCTGG...............................................................................291.000.001.00--------------------------------------
..............................................................................................................................................................ACCCAGGCTGGAGTGTGGAGCG......................................................................221.000.00-1.00-------------------------------------
..................................................................................................................................................TCTCACTTTGTCACCCAGGCGGAG................................................................................241.000.001.00--------------------------------------
...............................................................................................................ATGTGCGTGTGTGTGCGTAGAG.....................................................................................................................221.000.001.00--------------------------------------
................................................................................................................TGTGCGTGTGTGTGCGTGATGG....................................................................................................................221.000.001.00--------------------------------------
..............................................................................................................................................AGGGTCTCACTTTGTCACCCAGGCTGGAGCGC............................................................................321.000.001.00--------------------------------------
..................................................................................................................TGCGTGTGTGTGCGTGTGTGTAGAG...............................................................................................................251.000.001.00--------------------------------------
......................................................................................................................................................................TGGAGTGTGGCAGTGGGGT.................................................................191.000.00-----------------1.00---------------------
..............................................................................................................................................................ACCCAGGCTGGAGTGTGGCAGCGCC...................................................................251.000.001.00--------------------------------------
..................................................................................................................................................................AGGCTGGAGTGTGGCAGTGCCACC................................................................241.000.00-1.00-------------------------------------
..........................................................................................................................TGTGCGTGTGTGTGTGTGTCAGGGG.......................................................................................................251.000.001.00--------------------------------------
....................................................................................................................................................TCACTTTGTCACCCAGGCTGCAGG..............................................................................241.000.001.00--------------------------------------
......................................................................................................................................................................TGGAGTGTGGCAGTGGTAA.................................................................191.000.00---------1.00-----------------------------
...................................................................................................................GCGTGTGTGTGCGTGTGTGTGAAT...............................................................................................................241.000.00----------------------1.00----------------
............................................................................................................................................................TCACCCAGGCTGGAGTGTGGCGCAC.....................................................................251.000.001.00--------------------------------------
..............................................................................................................................................................ACCCAGGCTGGAGTGTGGCGAGA.....................................................................231.000.00------------------------------------1.00--
..................................................................................................................TGCGTGTGTGTGCGTGTGTGTTCC................................................................................................................241.000.001.00--------------------------------------
..........................................................................................................................................................................................................................AAGCGATTCTCCTGCCTCAGGCTGCA......261.000.00-1.00-------------------------------------
...............................................................................................................................................................CCCAGGCTGGAGTGTGGGGGA......................................................................211.000.00--------------------------1.00------------
................................................................................................................TGTGCGTGTGTGTGCGAGT.......................................................................................................................191.000.00-------------------------------------1.00-
....................................................................................................................................................................................................................GATTTCAAGCGATTCTAGGT..................201.000.00--1.00------------------------------------
.......................................................................................................................GTGTGTGCGTGTGTGTGTGTGTCA...........................................................................................................2440.250.25------------0.25--------------------------
...............................................................................................................ATGTGCGTGTGTGTGCGTGTGTGTGTG................................................................................................................2780.120.12-0.12-------------------------------------

Antisense strand
GCCCTGACACCGCCAGGACTCCCCCTCCAGGAACCAGGGGGCTTCTCCTGGTAAGCGTCTCAATAGCTATGCAGGACCCACCAATGGCAAAGGTTAAGCAGGTATATGTGCATGTGCGTGTGTGTGCGTGTGTGTGTGTGTCAGGGTCTCACTTTGTCACCCAGGCTGGAGTGTGGCAGTGCAATCTCAGCTCACTGCAACCTCTGCCTCCTGATTTCAAGCGATTCTCCTGCCTCAGGCTCCAGAGTAG
.....................................................................................................................((((((..((....((.((.(((.(((((.....))))).))).)).))....))...))).)))....................................................................
.....................................................................................................................118..............................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189782SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
.................................................................................................................................................................................AGTGCAATCTCAGCTCTTG...................................................... 191.000.00-------1.00-------------------------------
..............................................................................................................................CGTGTGTGTGTGTGTCGTC......................................................................................................... 1901.000.00---------------------------------1.00-----
......................................................................................................................................................................................................................................TGCCTCAGGCTCCAGAGTTT 201.000.00---------------1.00-----------------------
...............................................................................................................................................GGGTCTCACTTTGTCACCCAGGCTACC................................................................................ 271.000.00------------1.00--------------------------
...................................................................................................................................................................................CAGAGGTTGCAGTGAGCTGAGATTGCA............................................ 2701.001.00---------------------------1.00-----------
..................................................................................................................................................................................................................................CTCCTGCCTCAGGCTCCAGACC.. 221.000.00-1.00-------------------------------------
.................................................................................................................................................................................................ACTGCAACCTCTGCCTCCTGTTT.................................. 231.000.00-----1.00---------------------------------
....................................................................................................................................................................................................TCAGGAGGCAGAGGTTGC.................................... 1801.001.00-------------------------1.00-------------
...................................................................................................................................................................GGCTGGAGTGTGGCAGTC..................................................................... 181.000.00-----1.00---------------------------------
.........................................................................................................................................................................................................................................CTCAGGCTCCAGAGTACA 181.000.00----------------------------------1.00----
.....................................................................TGCAGGACCCACCAAGAAT.................................................................................................................................................................. 191.000.00----------------------------1.00----------
............................................................................................................................................................................................................................GCGATTCTCCTGCCTCAGGCTCCACT.... 261.000.001.00--------------------------------------
............................................................................................................................................................................................AGCTCACTGCAACCTCTGCCTCCG...................................... 241.000.00-1.00-------------------------------------
.....................................................................................................................................................CACTTTGTCACCCAGGCTGGAGTGGTA.......................................................................... 271.000.00-------1.00-------------------------------
................................................................................................................................................................................................................................TTCTCCTGCCTCAGGCTCCCTTC... 231.000.00-------------------1.00-------------------
.........CCGCCAGGACTCCCCGTTT.............................................................................................................................................................................................................................. 191.000.00---------1.00-----------------------------
......................................................................................................................................................................................................................TTTCAAGCGATTCTCCTGGGT............... 211.000.00------------------------------1.00--------
.....................................................................................................................................................................................................................................CTGCCTCAGGCTCCAGCC... 181.000.00------------------------1.00--------------
............................................................................................................................................................................................................................GCGATTCTCCTGCCTCAGGCTCCAGAGTC. 291.000.001.00--------------------------------------
.........................................................................................................................................................................CTGAGATTGCACTGCCACACT............................................................ 2130.330.33--------------------------------------0.33