ID: uc010zxp.1_intron_8_0_chr20_44987198_r
GENE: (2)
chr20:44987148-44987379-


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(4)
CERVIX 		(1)
HEART 		(6)
LIVER 		(2)
OTHER 		(10)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TGCATCCAATTAACCATGGGAAGGGTCAGCACCAGCCACCAGCCCCTTAGGTGAGGACTCTGCCTGGGGCTCTGCTGATGGTTCCGAATCATGGAGCTGCAGAGAGCTCCTCCAGCCTGGAGACGTTCTTGGTGAAAGCTGTGGTCTAACTCCACCGGCTCTTCCTGCACATTGTATTCAAGAGGGGTGCCTGCCCCCGCTGACTCAGGAGCTCCGGTGCTGCAGCCGCCAC
......................................................(((((..((..((((((((.(((.((((((((.....))))))))))))))))))).((((..((....))...)))).....))...))))).....................................................................................
..................................................51..............................................................................................147...................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR343334
.......................................................................................................................GAGACGTTCTTGGTGAAAGCTGTG.........................................................................................2413.003.00------3.00---------------------------------------
......................................................................................................................GGAGACGTTCTTGGTGAAAGCT............................................................................................2213.003.00--1.002.00------------------------------------------
.....................................................AGGACTCTGCCTGGGGCTCTG..............................................................................................................................................................2113.003.00-------3.00--------------------------------------
........................................................................................................................AGACGTTCTTGGTGAAAGCTGTGG........................................................................................2412.002.002.00---------------------------------------------
...............................................................CTGGGGCTCTGCTGATGGTTCCGAA................................................................................................................................................2512.002.00---------------2.00------------------------------
.......................................................................................................................................................................................................CTGACTCAGGAGCTCCGGT..............1912.002.00----------2.00-----------------------------------
.............................................................................................................................................................................................................CAGGAGCTCCGGTGCTGCAGCCGCC..2512.002.002.00---------------------------------------------
....................................................................................................................CTGGAGACGTTCTTGGTGAAAG..............................................................................................2212.002.00-----------2.00----------------------------------
.....................................................................................................................TGGAGACGTTCTTGGTG..................................................................................................1712.002.002.00---------------------------------------------
.....................................................AGGACTCTGCCTGGGGCTCTGCTGATGG.......................................................................................................................................................2812.002.00-2.00--------------------------------------------
...................................................................................................................CCTGGAGACGTTCTTGGTGAAAG..............................................................................................2312.002.00-----------------------1.00-----------------1.00----
...........................................................................................TGGAGCTGCAGAGAGCTCCTCCAGCCTGGAG..............................................................................................................3111.001.00---------------------------------1.00------------
............................................................................................................................................GTGGTCTAACTCCACCGGCTCTTCCT..................................................................2611.001.00--1.00-------------------------------------------
.......................................................................................................................................................................................................CTGACTCAGGAGCTCCGGTGCTGCAGCCG....2911.001.00---------------------------1.00------------------
.................................................................................................................................................CTAACTCCACCGGCTCTTCCTGT................................................................231.000.00----------------------------------------1.00-----
.......................................................................................................................GAGACGTTCTTGGTGAAAGCTGTGGTC......................................................................................2711.001.00-----1.00----------------------------------------
................................................AGGTGAGGACTCTGCCTGGGGCTCTGCTGACGG.......................................................................................................................................................331.000.00-1.00--------------------------------------------
.......................................................................................ATCATGGAGCTGCAGAAAAA.............................................................................................................................201.000.00--------1.00-------------------------------------
.............................................................................................................................................................................................................CAGGAGCTCCGGTGCTGCAGCCGC...2411.001.00--------------------------------------1.00-------
....TCCAATTAACCATGGAAA..................................................................................................................................................................................................................181.000.00----------------------1.00-----------------------
................................................................................................................................................TCTAACTCCACCGGCTCTTCCTGCACTG............................................................281.000.00------------------1.00---------------------------
..................................................................GGGCTCTGCTGATGGTTCCG..................................................................................................................................................2011.001.00---1.00------------------------------------------
..............................................................................................................TCCAGCCTGGAGACGTTCTTG.....................................................................................................2111.001.00--------------------1.00-------------------------
.................................................................................................TGCAGAGAGCTCCTCCAGCCTGGAGACGT..........................................................................................................2911.001.00--1.00-------------------------------------------
.......................................................................................ATCATGGAGCTGCAGAGAGCT............................................................................................................................2111.001.00-----1.00----------------------------------------
...............................................................................................................CCAGCCTGGAGACGTTCT.......................................................................................................1811.001.00--------1.00-------------------------------------
..........................................................................................ATGGAGCTGCAGAGAGCTCCT.........................................................................................................................2111.001.00------------------------------1.00---------------
............................................................................................................CCTCCAGCCTGGAGACGT..........................................................................................................1811.001.00-------------------------1.00--------------------
................................................................TGGGGCTCTGCTGATGGTTCCGAA................................................................................................................................................2411.001.00-------------1.00--------------------------------
.....................................................................CTCTGCTGATGGTTCCG..................................................................................................................................................1711.001.00---------------------1.00------------------------
..............................................................................................AGCTGCAGAGAGCTCCTCCAGCCTGGAGACGTT.........................................................................................................3311.001.00-----------------------------------1.00----------
........................................................................................................................................................................................................TGACTCAGGAGCTCCGGTGCTGCAGCCGC...2911.001.00--------------1.00-------------------------------
.................GGGAAGGGTCAGCACCAGCC...................................................................................................................................................................................................2011.001.00------------1.00---------------------------------
.................................................................................................................................................................................................CCCCCGCTGACTCAGGAGCTCCGGTGCCGC.........301.000.00-1.00--------------------------------------------
.........................................................................................................................GACGTTCTTGGTGAAAGCTGTGG........................................................................................2311.001.00----------------1.00-----------------------------
................................................................TGGGGCTCTGCTGATGGTTCCGTA................................................................................................................................................2411.001.00------------------------------------1.00---------
..................................................................................................................................GGTGAAAGCTGTGGTCTAACTC................................................................................2211.001.00----------------------------------1.00-----------
.................................................................................................................................................CTAACTCCACCGGCTCTTCCTGC................................................................2311.001.001.00---------------------------------------------
....................................................................................................................CTGGAGACGTTCTTGGTGAAAGCTGTGGT.......................................................................................2911.001.00--------------1.00-------------------------------
................................................................TGGGGCTCTGCTGATGGTTCCG..................................................................................................................................................2211.001.00---1.00------------------------------------------
.................................................................GGGGCTCTGCTGATGGTTCCGAA................................................................................................................................................2311.001.00--1.00-------------------------------------------
....................................................................................CGAATCATGGAGCTGCAGAG................................................................................................................................2011.001.00--------------------------1.00-------------------
...................................................TGAGGACTCTGCCTGGGGCTC................................................................................................................................................................2111.001.00--1.00-------------------------------------------
.............................................................................................................................................TGGTCTAACTCCACCGGC.........................................................................1811.001.00---------------------------------------1.00------
........................................................................................................................AGACGTTCTTGGTGAA................................................................................................1611.001.00-----------------1.00----------------------------
.................................................................................................................AGCCTGGAGACGTTCTTG.....................................................................................................1811.001.00---1.00------------------------------------------
..................................................................................................................................GGTGAAAGCTGTGGTCT.....................................................................................1711.001.00------------1.00---------------------------------
........................................................................................................AGCTCCTCCAGCCTGGAGACGTTCTTGGTG..................................................................................................3011.001.00---------1.00------------------------------------
............................................................................................................................................................................................................TCAGGAGCTCCGGTGCTGCAGC......2211.001.00----1.00-----------------------------------------
.............................................................................................GAGCTGCAGAGAGCTAGAC........................................................................................................................191.000.00-----------------------------1.00----------------
..........TAACCATGGGAAGGGTCAGCACC.......................................................................................................................................................................................................2311.001.00-----1.00----------------------------------------
...............................................................................................................CCAGCCTGGAGACGTTCTTGAA...................................................................................................221.000.00--------1.00-------------------------------------
............................................................................................................................................................................................................TCAGGAGCTCCGGTGCTGCAGCCGCCA.2711.001.00----1.00-----------------------------------------
.....................AGGGTCAGCACCAGCCACCAGCCCCTCAGG.....................................................................................................................................................................................301.000.00-1.00--------------------------------------------
..........................................................................................ATGGAGCTGCAGAGAGCT............................................................................................................................1811.001.00-------------------------------1.00--------------
........................................AGCCCCTTAGGTGAGGACTCTGCCTGGG....................................................................................................................................................................2811.001.00----1.00-----------------------------------------
........................................................................................................................AGACGTTCTTGGTGAAAGCT............................................................................................2011.001.00---1.00------------------------------------------
..................GGAAGGGTCAGCACCAGCCACC................................................................................................................................................................................................2211.001.00--1.00-------------------------------------------
............................................................TGCCTGGGGCTCTGCTGATGGT......................................................................................................................................................2211.001.00----------------------------1.00-----------------
...............................................................CTGGGGCTCTGCTGATGGTT.....................................................................................................................................................2011.001.00-------------1.00--------------------------------
.............................................................GCCTGGGGCTCTGCTGATGGTTCCGT.................................................................................................................................................261.000.00------------------------1.00---------------------
...............................................TAGGTGAGGACTCTGC.........................................................................................................................................................................1620.500.50------------------------------------------0.50---
.................................................................GGGGCTCTGCTGATGGTT.....................................................................................................................................................1820.500.50----0.50-----------------------------------------
.........................................GCCCCTTAGGTGAGG................................................................................................................................................................................1570.290.29--------------------------------------------0.29-
.......................................................................................................................................................CCACCGGCTCTTCCT..................................................................1580.120.12---------------------------------------------0.12

Antisense strand
TGCATCCAATTAACCATGGGAAGGGTCAGCACCAGCCACCAGCCCCTTAGGTGAGGACTCTGCCTGGGGCTCTGCTGATGGTTCCGAATCATGGAGCTGCAGAGAGCTCCTCCAGCCTGGAGACGTTCTTGGTGAAAGCTGTGGTCTAACTCCACCGGCTCTTCCTGCACATTGTATTCAAGAGGGGTGCCTGCCCCCGCTGACTCAGGAGCTCCGGTGCTGCAGCCGCCAC
......................................................(((((..((..((((((((.(((.((((((((.....))))))))))))))))))).((((..((....))...)))).....))...))))).....................................................................................
..................................................51..............................................................................................147...................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR343334
............................................................................................GGAGCTGCAGAGAGCTTT.......................................................................................................................... 181.000.00-------------------------------------1.00--------
.................................................................................................................................................CTAACTCCACCGGCTCT...................................................................... 171.000.00-------------------1.00--------------------------
.....................................................................................................................................................................................................................CCGGTGCTGCAGCCGCAG. 181.000.00--------------------------------1.00-------------
........................................................................................................................................................................................GGGTGCCTGCCCCCGCGCAG............................ 201.000.00---------1.00------------------------------------
...............................................................................................GCTGCAGAGAGCTCCTATC...................................................................................................................... 191.000.00-1.00--------------------------------------------
.......................................................................TCGGAACCATCAGCAG................................................................................................................................................. 1620.500.50-------------------------------------------0.50--
.........................................................................................................TCCAGGCTGGAGGAGC............................................................................................................... 1640.250.25----------------0.25-----------------------------
.........................................................................................................GCTCCTCCAGCCTGGAGCAG........................................................................................................... 200.250.00---------0.25------------------------------------