ID: uc010zwh.1_intron_2_0_chr20_42142702_f.3p
GENE: (3)
chr20:42143075-42143324+


(1)
AGO2.ip 		(10)
B-CELL 		(3)
BREAST 		(17)
CELL-LINE 		(1)
HEART 		(2)
HELA 		(1)
KIDNEY 		(2)
OTHER 		(7)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GACCCCGCAGGTGCTTGGGGGCGTAGCCTGGAGTGAGGGTTTGGCTGGTGTAGCTTGGAGTGAGGCCCCCTGGCGTGGAGTCTTGAGGCCTGCTGAGGGCGTGAGCTGGCATGAGGCGAAGAGAGGGCCATGGCACCGACTCCGAGATGGGTCAAGGACCCGTACGGGAGTCGCAATCCTCAGACCCTCCCGCGCTCCAGTTCCGGATAAGCGAGTATAAGCCGCTGAACATGGCGGGAGTGGAGCAGCC
............................................((.((((..(((((....(((((....(((.....)))....))))).))))).((....))..)))).)).......................................................................................................................................
............................................45......................................................................117...................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
.......................................................................................................................................................................................................................................TGGCGGGAGTGGAGCAGC.1819.009.00-9.00-------------------------------------------
...............................................................................................AGGGCGTGAGCTGGCATG.........................................................................................................................................1815.005.00---4.00----------------------------------------1.00
...........................................................................................GCTGAGGGCGTGAGCTGGCA...........................................................................................................................................2015.005.00----4.00-----------------------------1.00----------
...........................................................................................GCTGAGGGCGTGAGCTGGCAT..........................................................................................................................................2114.004.00-----1.00-------1.00--------1.00------1.00---------------
.....................................................................CTGGCGTGGAGTCTTGAGGC.................................................................................................................................................................2013.003.002.00----1.00---------------------------------------
.................................................GTAGCTTGGAGTGAGGCC.......................................................................................................................................................................................1812.002.00--------2.00------------------------------------
..............................................................................................................................GCCATGGCACCGACTCCG..........................................................................................................1812.002.00--------------2.00------------------------------
.............................GGAGTGAGGGTTTGGCTGG..........................................................................................................................................................................................................1912.002.002.00--------------------------------------------
...............TGGGGGCGTAGCCTGGAGTGAGG....................................................................................................................................................................................................................2312.002.00--2.00------------------------------------------
..............................................................................AGTCTTGAGGCCTGCTGAGG........................................................................................................................................................2012.002.002.00--------------------------------------------
..................................................................................................GCGTGAGCTGGCATGAGGCGA...................................................................................................................................2112.002.00--2.00------------------------------------------
..................................................................................................GCGTGAGCTGGCATGAGGCGAAGAGAG.............................................................................................................................2712.002.00------------2.00--------------------------------
...................................................................CCCTGGCGTGGAGTCTTGAGGC.................................................................................................................................................................2212.002.002.00--------------------------------------------
......................................................TTGGAGTGAGGCCCCCTGGCG...............................................................................................................................................................................2112.002.00--2.00------------------------------------------
.....................................................................................................................GAAGAGAGGGCCATGGCACCGACTCCGAGATG.....................................................................................................3211.001.00------------------1.00--------------------------
...CCCGCAGGTGCTTGGGGG.....................................................................................................................................................................................................................................1811.001.00--------------------1.00------------------------
...................................................................................................................................................TGGGTCAAGGACCCGTACGGGAGTCGCAATC........................................................................3111.001.00-------1.00-------------------------------------
................................................................................................................................................................................................................................CTGAACATGGCGGGAGTGGAG.....2111.001.00-----------------------1.00---------------------
.................................................................................................................AGGCGAAGAGAGGGCCATG......................................................................................................................1911.001.00---------------------------1.00-----------------
......................................................................TGGCGTGGAGTCTTGAGGCC................................................................................................................................................................2011.001.00----------1.00----------------------------------
...............................................................................................................................................................................................................................GCTGAACATGGCGGGAGGGG.......201.000.001.00--------------------------------------------
...........................................................................................GCTGAGGGCGTGAGCTGGCATG.........................................................................................................................................2211.001.00------------------------------------1.00--------
.........................................................................................................CTGGCATGAGGCGAACCG...............................................................................................................................181.000.00-------------------1.00-------------------------
..............TTGGGGGCGTAGCCTGGAGTGAGGT...................................................................................................................................................................................................................251.000.00----------------1.00----------------------------
....................................................................................................................CGAAGAGAGGGCCATGGCAC..................................................................................................................2011.001.00-----1.00---------------------------------------
.........................................................................................CTGCTGAGGGCGTGAGCTGGCATG.........................................................................................................................................2411.001.00----------------------------1.00----------------
.................................................................................................................AGGCGAAGAGAGGGC..........................................................................................................................1511.001.00---------------------------------------1.00-----
....................................................................CCTGGCGTGGAGTCTTGAGGCCTGC.............................................................................................................................................................2511.001.001.00--------------------------------------------
...............................................................................................................................................................................................................................GCTGAACATGGCGGGAGTGG.......2011.001.00------1.00--------------------------------------
................................................................................................GGGCGTGAGCTGGCATGAGGC.....................................................................................................................................2111.001.00-----------------------------------1.00---------
..................................................................CCCCTGGCGTGGAGTCTTGAGGC.................................................................................................................................................................2311.001.001.00--------------------------------------------
.............................................................................................................................................CCGAGATGGGTCAAGGACCCG........................................................................................2111.001.00------------------------------------------1.00--
.........................................................................CGTGGAGTCTTGAGGCCTGCTGAGGGC......................................................................................................................................................2711.001.00---------------------1.00-----------------------
................................................................................................GGGCGTGAGCTGGCATTT........................................................................................................................................181.000.00-----------------1.00---------------------------
.........................................................................................CTGCTGAGGGCGTGAGCTGGCATGAGGC.....................................................................................................................................2811.001.00-------------------------------------------1.00-
...............................................................................................AGGGCGTGAGCTGGCATGAGG......................................................................................................................................2111.001.00-------------------------------1.00-------------
.....................................................CTTGGAGTGAGGCCCCCTGGC................................................................................................................................................................................2111.001.00------------------------1.00--------------------
...............................................................................GTCTTGAGGCCTGCTGA..........................................................................................................................................................1711.001.00-------1.00-------------------------------------
.......................................................................................GCCTGCTGAGGGCGTGAGCTG..............................................................................................................................................2111.001.00-------------1.00-------------------------------
.................................................................CCCCCTGGCGTGGAGCCGG......................................................................................................................................................................191.000.00----------1.00----------------------------------
............................................................................................................................GGGCCATGGCACCGACTCCGAGA.......................................................................................................2311.001.00--1.00------------------------------------------
.......................................................................................GCCTGCTGAGGGCGTGAGCTGG.............................................................................................................................................2211.001.00----------------------------------------1.00----
........................................................................GCGTGGAGTCTTGAGGCCTGCTGAGGG.......................................................................................................................................................2711.001.00------1.00--------------------------------------
..................................................................CCCCTGGCGTGGAGTCTTGGGGC.................................................................................................................................................................231.000.001.00--------------------------------------------
......................................................................................GGCCTGCTGAGGGCGTGAGCT...............................................................................................................................................2111.001.001.00--------------------------------------------
....................................................................................................................................................GGGTCAAGGACCCGTACGGGAGTCGCA...........................................................................2711.001.00-----------------------------------------1.00---
...............................................................................................................TGAGGCGAAGAGAGGGCCATGGCACCG................................................................................................................2711.001.00--------------------------------------1.00------
...................................................AGCTTGGAGTGAGGCCCCCCAGT................................................................................................................................................................................231.000.00---------1.00-----------------------------------
...........................................................................................GCTGAGGGCGTGAGCTGGCATGAG.......................................................................................................................................2411.001.00---------------1.00-----------------------------
.............................................................................................................CATGAGGCGAAGAGAGGGC..........................................................................................................................1911.001.00--------------------------1.00------------------
.......................................................................................................................................................................................................................................TGGCGGGAGTGGAGCCCAG191.000.00------------------------------1.00--------------
...........................................................................TGGAGTCTTGAGGCCTGCTGAGG........................................................................................................................................................2311.001.00--------------------------------1.00------------
......................................................................................................................................................................................................AGTTCCGGATAAGCGAGAGCC...............................211.000.00---------------------------------1.00-----------
..........................................................................................................................................................................................................................................CGGGAGTGGAGCAGC.1550.200.20------0.20--------------------------------------

Antisense strand
GACCCCGCAGGTGCTTGGGGGCGTAGCCTGGAGTGAGGGTTTGGCTGGTGTAGCTTGGAGTGAGGCCCCCTGGCGTGGAGTCTTGAGGCCTGCTGAGGGCGTGAGCTGGCATGAGGCGAAGAGAGGGCCATGGCACCGACTCCGAGATGGGTCAAGGACCCGTACGGGAGTCGCAATCCTCAGACCCTCCCGCGCTCCAGTTCCGGATAAGCGAGTATAAGCCGCTGAACATGGCGGGAGTGGAGCAGCC
............................................((.((((..(((((....(((((....(((.....)))....))))).))))).((....))..)))).)).......................................................................................................................................
............................................45......................................................................117...................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
.......................................................................................................................................................CGACTCCCGTACGGGTCCTTGA............................................................................. 2212.002.00-----------2.00---------------------------------
....................................................................................GAGGCCTGCTGAGGGGCTT................................................................................................................................................... 191.000.00-------------------------1.00-------------------
.......................................................................................................................................................................CGGGAGGGTCTGAGGATTGCGACTC.......................................................... 2511.001.00-------------------------------------1.00-------
...............TGGGGGCGTAGCCTGGCCCG....................................................................................................................................................................................................................... 201.000.00---------1.00-----------------------------------