ID: uc010zvm.1_intron_11_0_chr20_34317288_r.3p
GENE: (4)
chr20:34317238-34317487-


(1)
AGO1.ip 		(1)
AGO3.ip 		(8)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(31)
CELL-LINE 		(5)
CERVIX 		(5)
HEART 		(10)
HELA 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(19)
SKIN 		(1)
XRN.ip

Sense strand
AAACCTGTAACTAGTGTAATTTTGTGTTTCCTTTTTAGCTCCGGACCAAAATTTAACAGTGCCATCCGAGGAAAGATTGGGTTGCCTCATAGCATCAAATTAAGGTTTTTAAACATACTTCTGAATTGTTTAAATTGTTTTTCAAGGAACTAACATGCTGTACTTGTTTGGATAACTTCTGAAACTTTTTAACTTTGCAGCAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAGACAAGAGCCCTG
.........................................................((.((.((((((.......)))))).))))....(((.......((((((((((((((...........))))))....(((.((((((.((...((.....))..)).)))))).)))....)))))))).......)))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189785SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
...............................................................................................................................................................................CTTCTGAAACTTTTTAACTTTGCAG..................................................25116.0016.005.00--------2.001.00---1.001.00--3.00-------------1.00--------------------------1.00----------------------1.00---------
..................................................ATTTAACAGTGCCATCCGAGGAAAGAT.............................................................................................................................................................................27116.0016.00--8.008.00----------------------------------------------------------------------------------------
..................................................ATTTAACAGTGCCATCCGAGGA..................................................................................................................................................................................2219.009.00-9.00------------------------------------------------------------------------------------------
.................................................................................................................................................................................TCTGAAACTTTTTAACTTTGCAG..................................................2317.007.00--------5.00------1.00-------------------------1.00--------------------------------------------------
........................................................................................................GTTTTTAAACATACTTCTGAATTGTT........................................................................................................................2617.007.00----------------4.00---------------------1.00-----------------------------------1.00-------------1.00---
................................................................................................................................................................................TTCTGAAACTTTTTAACTTTGCAG..................................................2415.005.00-----1.00---------1.00---------------------------1.00---------------------------------1.00--1.00-----------
......................................................................GAAAGATTGGGTTGCCTCATAGC.............................................................................................................................................................2314.004.003.00--------------------------------------------------1.00----------------------------------------
..............................................................................................................................................................................ACTTCTGAAACTTTTTAACTTTGCAG..................................................2614.004.00------2.00--1.00--------------------------------------------------------------------1.00-------------
......................................................................................TCATAGCATCAAATTAAG..................................................................................................................................................1814.004.00----------1.00------------------2.00-1.00------------------------------------------------------------
............................................................................................................................................................................TAACTTCTGAAACTTTTTAACTTTGCAG..................................................2813.003.00----------2.00---------------------1.00-----------------------------------------------------------
..............................................................................................................AAACATACTTCTGAATTGTT........................................................................................................................2013.003.00-------3.00------------------------------------------------------------------------------------
.........................................................................................................................................................................GGATAACTTCTGAAACTTTTTAACTTTGCAG..................................................3113.003.00------1.00------------------------1.00-----------------------------1.00------------------------------
...........................................................................................................................................................................ATAACTTCTGAAACTTTTTAACTTTGC....................................................2713.003.00-----3.00--------------------------------------------------------------------------------------
....................................................................................................................................................ACTAACATGCTGTACTTGTTTGGATAACTTCTGAAACTTTTTAACTTTGCAGT.................................................533.000.00------------3.00-------------------------------------------------------------------------------
.............................................................................................................................................................................AACTTCTGAAACTTTTTAACTTTGCAG..................................................2713.003.00----------1.00----1.00--------------------------------------------------1.00-------------------------
...................................................................GAGGAAAGATTGGGTTGCCTCATA...............................................................................................................................................................2413.003.00----------------------3.00---------------------------------------------------------------------
.......................................................................AAAGATTGGGTTGCCTCATAG..............................................................................................................................................................2112.002.001.00------------------------1.00------------------------------------------------------------------
............................................ACCAAAATTTAACAGTGCCATCCG......................................................................................................................................................................................2412.002.00--------------------2.00-----------------------------------------------------------------------
...................................................................................................................................................................................................................................ATTCAGAAAAGACAAGAGCCCTG2312.002.00------------------------------2.00-------------------------------------------------------------
........................................................................................................................................................................TGGATAACTTCTGAAACTTTTTAACTTTGCAG..................................................3212.002.00--------------2.00-----------------------------------------------------------------------------
...............................................................................................................AACATACTTCTGAATTGTTTA......................................................................................................................2112.002.00----2.00---------------------------------------------------------------------------------------
........................................................................................................GTTTTTAAACATACTTCTGAATTGTTTAAATTGTTTTTCAAGGAACTAACATGCTGTACTTGTTTGGATAACTTCTGAAACTTTTTAACTTTGC....................................................9412.002.00------------2.00-------------------------------------------------------------------------------
.....................................................................GGAAAGATTGGGTTGCCTCA.................................................................................................................................................................2012.002.00---------------------2.00----------------------------------------------------------------------
........................TGTTTCCTTTTTAGCTCCGGACC...........................................................................................................................................................................................................2312.002.00-----------1.00----------------1.00---------------------------------------------------------------
...........................................................................................................................................................................................................ACGACGTTCCCGAAGCAAAAGTCCATTC...................2812.002.00------2.00-------------------------------------------------------------------------------------
................................................................................................................................................AGGAACTAACATGCTGTACTTG....................................................................................2212.002.00-------------2.00------------------------------------------------------------------------------
.......................................................................................CATAGCATCAAATTAAG..................................................................................................................................................1721.501.50-----0.50------------------------------------1.00-------------------------------------------------
...................................................................................................................................................................................................................CCCGAAGCAAAAGTCCATTCAGA................2311.001.00-----------------------------------------------------------------------------------1.00--------
.........................................................................................................................................................................................................AGACGACGTTCCCGAAGCAAAAATA........................251.000.00-------1.00------------------------------------------------------------------------------------
........................................................................................................GTTTTTAAACATACTTCTGAA.............................................................................................................................2111.001.00------------------------------------------------------------------------------------1.00-------
.................................................................................................................................................................................TCTGAAACTTTTTAACTTTGCAGCAGAC.............................................2811.001.00-----1.00--------------------------------------------------------------------------------------
..........................................................................................................................................................................................................GACGACGTTCCCGAAGCAAA............................2011.001.00-------------1.00------------------------------------------------------------------------------
.................................................................................................................................................................ACTTGTTTGGATAACTTCTGAAACTTT..............................................................2711.001.00----------------------------------------------------1.00---------------------------------------
............................................................................................................................................TTCAAGGAACTAACATGCTGTACTTGTTTGGATAACTTCTGAAACTTTTTAACTTTGC....................................................5811.001.00----------------------------------------------------------------------1.00---------------------
.....................................................................................................................................................................................AAACTTTTTAACTTTGCAGCAGACGAC..........................................2711.001.00----1.00---------------------------------------------------------------------------------------
................................................................................................................................................AGGAACTAACATGCTGTA........................................................................................1811.001.00----1.00---------------------------------------------------------------------------------------
..................................................................................................................ATACTTCTGAATTGTTTAAATT..................................................................................................................2211.001.00-------1.00------------------------------------------------------------------------------------
................................................................................................................................................................................TTCTGAAACTTTTTAACTTTGCAGCAG...............................................2711.001.00-----------------------1.00--------------------------------------------------------------------
.........................................................................................................................................................................................TTTTTAACTTTGCAGCAGACGACGTTCCCG...................................3011.001.00-----------1.00--------------------------------------------------------------------------------
......................................CTCCGGACCAAAATTTAA..................................................................................................................................................................................................1811.001.00-------------------------------------------------------------------------------------1.00------
.........................................................................................................................................................................................................AGACGACGTTCCCGAAGCCA.............................2011.001.00-----------------------------------------------------------------1.00--------------------------
.................................................AATTTAACAGTGCCATCCG......................................................................................................................................................................................1911.001.00-------------------------------------------------1.00------------------------------------------
...................................................................................................................................................................................................................................ATTCAGAAAAGACAAGAG.....1811.001.00--------------------------------------------------------------1.00-----------------------------
....................................................................................................................................................................................................................................TTCAGAAAAGACAAGAGCCCTGA2311.001.00-----------------------1.00--------------------------------------------------------------------
.........................................................................................................................................................................................................................GCAAAAGTCCATTCAGAAAA.............2011.001.00-----------------------------------1.00--------------------------------------------------------
....................................................................................................................................................................................GAAACTTTTTAACTTTGCAGCAGACG............................................2611.001.00----1.00---------------------------------------------------------------------------------------
................................................................................................................................................AGGAACTAACATGCTATA........................................................................................181.000.00----1.00---------------------------------------------------------------------------------------
................................................................................................................................................................................TTCTGAAACTTTTTAACTTTGCAGCA................................................2611.001.00-------------------------------------------------------1.00------------------------------------
.................................................................................................................................................................................................................................CCATTCAGAAAAGACAAGAG.....2011.001.00-----1.00--------------------------------------------------------------------------------------
................................................................TCCGAGGAAAGATTGGGTT.......................................................................................................................................................................1911.001.00--------------------------------------------------------------------1.00-----------------------
...................................................................................................................................................................................................................................ATTCAGAAAAGACAAGAGCC...2011.001.00---------------------------------------------1.00----------------------------------------------
..................................................ATTTAACAGTGCCATCCGGGGA..................................................................................................................................................................................221.000.00-1.00------------------------------------------------------------------------------------------
....................................................................AGGAAAGATTGGGTTGCCT...................................................................................................................................................................1911.001.00------------------------------------------------------------1.00-------------------------------
....................................................................AGGAAAGATTGGGTTGCCTCA.................................................................................................................................................................2111.001.00-------------------1.00------------------------------------------------------------------------
.........................................................................................................................................................................................................AGACGACGTTCCCGAAGCA..............................1911.001.00-------------1.00------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CAAAAGTCCATTCAGAAAAG............2011.001.00--------------------------1.00-----------------------------------------------------------------
....................................................................................................................................................................................................................CCGAAGCAAAAGTCCATTCAG.................2111.001.00---------------------------------------1.00----------------------------------------------------
...............................................................ATCCGAGGAAAGATTGGGTT.......................................................................................................................................................................2011.001.00----1.00---------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................TTCAGAAAAGACAAGAGCCCTG2211.001.00-------------------1.00------------------------------------------------------------------------
...........................................................................................................................................................................................................................AAAAGTCCATTCAGAAAAGACAAGAGCCCTGCGAG351.000.00---------------------------------1.00----------------------------------------------------------
..................................................................CGAGGAAAGATTGGGTTGC.....................................................................................................................................................................1911.001.00--------------1.00-----------------------------------------------------------------------------
....................................................................................CCTCATAGCATCAAATTAAG..................................................................................................................................................2011.001.00------------------------------------1.00-------------------------------------------------------
....................................................................AGGAAAGATTGGGTTGCCTTA.................................................................................................................................................................2111.001.00---------------------------------------------------------------------------------------1.00----
.......................................................................................................................TCTGAATTGTTTAAATTGT................................................................................................................1911.001.00----------------------------------1.00---------------------------------------------------------
...........................................................................................................................................................TGCTGTACTTGTTTGTTG.............................................................................181.000.00--------------------1.00-----------------------------------------------------------------------
........................................CCGGACCAAAATTTAACAGTGCCATCC.......................................................................................................................................................................................2711.001.00------------------------1.00-------------------------------------------------------------------
.......................................................................................................................................................................................................GCAGACGACGTTCCCGAAGCAA.............................2211.001.00----------------------------------------------1.00---------------------------------------------
.............................................................................................................................................................................................................GACGTTCCCGAAGCAAAAGTCCATTC...................2611.001.00------------------------------------------------------1.00-------------------------------------
..................................................................................................................................................GAACTAACATGCTGTACTTGTTTGGATAAC..........................................................................3011.001.00-------------------1.00------------------------------------------------------------------------
....................................................................................................................................................................................GAAACTTTTTAACTTTGCAG..................................................2011.001.00---------1.00----------------------------------------------------------------------------------
........................................................................AAGATTGGGTTGCCTCATAGT.............................................................................................................................................................211.000.00-----------------1.00--------------------------------------------------------------------------
......................................CTCCGGACCAAAATTTAACAGTGCCATCCGAG....................................................................................................................................................................................3211.001.00-------------------------1.00------------------------------------------------------------------
...............................................................................................................................................................................CTTCTGAAACTTTTTAACTTTG.....................................................2211.001.00-------------------------------------------------------------------1.00------------------------
..................................................ATTTAACAGTGCCATCCGAGGAAAGA..............................................................................................................................................................................2611.001.00--------------------------------------------1.00-----------------------------------------------
......................................................AACAGTGCCATCCGAGGAT.................................................................................................................................................................................191.000.00-----------------1.00--------------------------------------------------------------------------
...............................................................ATCCGAGGAAAGATTGGG.........................................................................................................................................................................1811.001.00--------------------------1.00-----------------------------------------------------------------
.......................................................................AAAGATTGGGTTGCCTCA.................................................................................................................................................................1811.001.00-----------------1.00--------------------------------------------------------------------------
......................................CTCCGGACCAAAATTTAACA................................................................................................................................................................................................2011.001.00---------------------1.00----------------------------------------------------------------------
..............................................................................................................................................................................................................................AGTCCATTCAGAAAAGACAAG.......2111.001.00-------------1.00------------------------------------------------------------------------------
....................................................................................................................................................................................................GCAGCAGACGACGTTCCCGAAGC...............................2311.001.00---------------------------------------------------------------------1.00----------------------
.........................................................................................................................................................................................................AGACGACGTTCCCGAAGC...............................1811.001.00------------------------1.00-------------------------------------------------------------------
..................................................ATTTAACAGTGCCATCCGAGGAACGAT.............................................................................................................................................................................271.000.00--1.00-----------------------------------------------------------------------------------------
.......................................................................AAAGATTGGGTTGCCTCATAGCA............................................................................................................................................................2311.001.00----------------------------------------------------------1.00---------------------------------
.................................................................................................................................................................................................................................CCATTCAGAAAAGACAGGC......191.000.00-----------------------------------------------------1.00--------------------------------------
..........................................................................................................................................................................................................GACGACGTTCCCGAAGCAAAAG..........................2211.001.00------------------------------------------------1.00-------------------------------------------
.................................................AATTTAACAGTGCCATCCGAGGA..................................................................................................................................................................................2311.001.00-----------------1.00--------------------------------------------------------------------------
.......................................................................AAAGATTGGGTTGCCTCATAGCATC..........................................................................................................................................................2511.001.00---------------------------1.00----------------------------------------------------------------
...................TTTTGTGTTTCCTTTTCAGC...................................................................................................................................................................................................................201.000.00-----------1.00--------------------------------------------------------------------------------
........................................CCGGACCAAAATTTAACAGTGCCATCCGAGGAAAGATTGGGTTGCCTCATAGC.............................................................................................................................................................5311.001.00--------------------------------------------------------------------------------------1.00-----
................................................................................................................................................AGGAACTAACATGCTGTACTTTTGG.................................................................................251.000.00----------------------------1.00---------------------------------------------------------------
...........................................................................................................................................................................ATAACTTCTGAAACTTTTTAACTTTGCAG..................................................2911.001.00---------1.00----------------------------------------------------------------------------------
..........................................................................................................................................................................................................GACGACGTTCCCGAAGCA..............................1811.001.00----1.00---------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................CATTCAGAAAAGACAAGAG.....1911.001.00---------------------------------------------------------------------------1.00----------------
......................................................................................................................................................................................AACTTTTTAACTTTGCAGCAGA..............................................2211.001.00-----1.00--------------------------------------------------------------------------------------
...........................................................................................................................................................................................................ACGACGTTCCCGAAG................................1511.001.00-----------------------------------------------------------------------1.00--------------------
................................................................................................................................................................TACTTGTTTGGATAACTTCTGA....................................................................2211.001.00---------------------------------------------------------1.00----------------------------------
....................................................................................................................................................................................................................................TTCAGAAAAGACAAGAGCC...1911.001.00------------------------------------------------------------------------1.00-------------------
...........................................................................................................................................................................................................ACGACGTTCCCGAAGCAAAAGTCCAGA....................271.000.00-----------1.00--------------------------------------------------------------------------------
.......................................................................................................................................................................................ACTTTTTAACTTTGCACTTA...............................................201.000.00----------------------------------------1.00---------------------------------------------------
..................................................................................................................................................................................................................................CATTCAGAAAAGACAAGAGCCCTG2411.001.00---------------------------------------------------------------------------------1.00----------
...............................................................................................................................................................................CTTCTGAAACTTTTTAACTTTGC....................................................2311.001.001.00-------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGAAACTTTTTAACTTTGCAG..................................................2111.001.00---------------------------------------------------------------1.00----------------------------
......................................................................................TCATAGCATCAAATTGTTT.................................................................................................................................................191.000.00---------------------------1.00----------------------------------------------------------------
.........................................................................................TAGCATCAAATTAAGGGGTT.............................................................................................................................................201.000.00----------------------------------------------------------------------------1.00---------------
..........................TTTCCTTTTTAGCTCCGGACCA..........................................................................................................................................................................................................2211.001.00-----------1.00--------------------------------------------------------------------------------
...................................................................GAGGAAAGATTGGGTTGCC....................................................................................................................................................................1911.001.00--------------------------------------------------1.00-----------------------------------------
.................................................................................................................CATACTTCTGAATTGTTTAA.....................................................................................................................2011.001.00-------------------------------------------------------------------------1.00------------------
.....................................................................................................................................................................................................................CGAAGCAAAAGTCCA......................1520.500.50-----------------------------------0.50--------------------------------------------------------
....................................................................................................................................................................................................................CCGAAGCAAAAGTCCA......................1620.500.50-------------------------------------------------------------------------------------------0.50
........................................................................................................................CTGAATTGTTTAAATTGT................................................................................................................1820.500.50----------------------------------0.50---------------------------------------------------------
...............................................AAAATTTAACAGTGCCATC........................................................................................................................................................................................1920.500.50--------------0.50-----------------------------------------------------------------------------
......................................................................................................................................................................................................................................CAGAAAAGACAAGAGCCCT.1920.500.50------------------------------------------------------------------------------------------0.50-
..................................................................................................................................................................................................................................CATTCAGAAAAGACAAG.......1720.500.50---------------------------------0.50----------------------------------------------------------
.........................................................................................................................................................................................................................................AAAAGACAAGAGCCCTG1730.330.33-----------------------------------------------------------------------------------------0.33--
........................................................................................................................................................................................................................................GAAAAGACAAGAGCCCTG1830.330.33-----------------------------------------------------------------------------------------0.33--

Antisense strand
AAACCTGTAACTAGTGTAATTTTGTGTTTCCTTTTTAGCTCCGGACCAAAATTTAACAGTGCCATCCGAGGAAAGATTGGGTTGCCTCATAGCATCAAATTAAGGTTTTTAAACATACTTCTGAATTGTTTAAATTGTTTTTCAAGGAACTAACATGCTGTACTTGTTTGGATAACTTCTGAAACTTTTTAACTTTGCAGCAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAGACAAGAGCCCTG
.........................................................((.((.((((((.......)))))).))))....(((.......((((((((((((((...........))))))....(((.((((((.((...((.....))..)).)))))).)))....)))))))).......)))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189785SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
...........................................................................................................................................................................................................................TGTCTTTTCTGAATGGACTTTT......... 2212.002.00-------------------------------------1.00--------------------------1.00---------------------------
.....TGTAACTAGTGTAATTTCCT................................................................................................................................................................................................................................. 201.000.00--------------------------------------------------------1.00-----------------------------------
.............................................................................................ATCAAATTAAGGTTTTGT........................................................................................................................................... 181.000.00-------------------------------------------------------------------------------1.00------------
........................................TAAATTTTGGTCCGG................................................................................................................................................................................................... 1541.001.00-----------------------------------------------1.00--------------------------------------------