ID: uc010zro.1_intron_8_0_chr20_17543741_r.5p
GENE: (1)
chr20:17549616-17549865-


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(21)
BREAST 		(23)
CELL-LINE 		(8)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(5)
HELA 		(1)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(20)
SKIN 		(2)
UTERUS 		(2)
XRN.ip

Sense strand
GAGGCGACCGTGGCCATGCAGAGTGCTCTGTGAGTCACCGTTAATTTCAGGTCTGGAAAAACAAGGAGCATTTATTTATCTTTGGGAACTGCCGGGGAAGGAGGCCGGCGGCGCGCAGGGGTGTGGCTGGGAAAGGCCGCGCTGTCCCGGGACGGTGGCGCCAGCCCCGCCGCTCAGTTCTCCGGGTTTTTAATTTGGAATTGTGTTTTTCTAATGGGCGGTTGCGTCGGAAACACGGTTTTCAGAGGGC
...................................................(((((.....((((((...........)))))).......)))))...((.(((.((((.(((.....(((((((((......)))))))))(((....))).))).)))).)))))..................................................................................
..................................................51....................................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR343336SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR040030(GSM532915)
G013N. (cervix)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR040022(GSM532907)
G575N. (cervix)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532879(GSM532879)
G659N. (cervix)		SRR038862(GSM458545)
MM472. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR040019(GSM532904)
G701T. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		SRR343335SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040024(GSM532909)
G613N. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..........................................................................................................................................................................................................................CGGTTGCGTCGGAAACAC..............1819.009.006.001.00----------------1.00-----1.00--------------------------------------------------------------------------
..................................................GTCTGGAAAAACAAGGAGCA....................................................................................................................................................................................2015.005.00---4.00-----------------------------------------------------1.00-----------------------------------------
...................................................................................................................................................CGGGACGGTGGCGCCAGC.....................................................................................1814.004.001.00----2.00-----1.00---------------------------------------------------------------------------------------
..GGCGACCGTGGCCATGCAGAG...................................................................................................................................................................................................................................2114.004.00--1.00--3.00---------------------------------------------------------------------------------------------
.................................................................................................................................................................................................TTTGGAATTGTGTTTTTAT......................................194.000.00---------2.00------------------2.00----------------------------------------------------------------------
......ACCGTGGCCATGCAGAGTG.................................................................................................................................................................................................................................1914.004.00------1.00------------------1.00-----1.00---------------------------------------------------1.00---------------
..................................................GTCTGGAAAAACAAGGAG......................................................................................................................................................................................1813.003.00--3.00------------------------------------------------------------------------------------------------
..........TGGCCATGCAGAGTGCTCTG............................................................................................................................................................................................................................2013.003.00---1.00-------------------------1.00----1.00----------------------------------------------------------------
..........................................................................................................................................................................................................................CGGTTGCGTCGGAAACACGGT...........2113.003.00--3.00------------------------------------------------------------------------------------------------
.....................................................................................................................................AGGCCGCGCTGTCCCGGGACGGTGGC...........................................................................................2612.002.002.00--------------------------------------------------------------------------------------------------
...............................................................................................................................................GTCCCGGGACGGTGGCGC.........................................................................................1812.002.001.001.00-------------------------------------------------------------------------------------------------
.................................................................................TTGGGAACTGCCGGGGAA.......................................................................................................................................................1812.002.00--1.00-----1.00------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................ATGGGCGGTTGCGTCGGA...................1812.002.00------------2.00--------------------------------------------------------------------------------------
..................................................GTCTGGAAAAACAAGGAGCAT...................................................................................................................................................................................2112.002.00--1.00-----1.00------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GCGGTTGCGTCGGAAACA...............1812.002.001.00-----------------------------------1.00--------------------------------------------------------------
.............................................................................ATCTTTGGGAACTGCCGGGGAAGGAG...................................................................................................................................................2612.002.00----------1.00---------------------------------------------------------------------------1.00------------
...................................................................................GGGAACTGCCGGGGAAGGAGG..................................................................................................................................................2112.002.00--2.00------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CGGTTGCGTCGGAAACA...............1712.002.00-2.00-------------------------------------------------------------------------------------------------
.........................................................................ATTTATCTTTGGGAACTGC..............................................................................................................................................................1912.002.00----1.00---------------------------------------------------1.00------------------------------------------
................................................AGGTCTGGAAAAACAAGGAGC.....................................................................................................................................................................................2112.002.00-------------------1.00-----------------------------1.00-------------------------------------------------
.......................................................................................ACTGCCGGGGAAGGAGGC.................................................................................................................................................1812.002.00---------------------------------2.00-----------------------------------------------------------------
.............................................................................ATCTTTGGGAACTGCCGGG..........................................................................................................................................................1912.002.00-----------------------------------1.00-1.00-------------------------------------------------------------
..............................................................................................................................................................................................................................TGCGTCGGAAACACGG............1612.002.002.00--------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GCGGTTGCGTCGGAAACACGGT...........2212.002.00-2.00-------------------------------------------------------------------------------------------------
...................AGAGTGCTCTGTGAGTCACCGTT................................................................................................................................................................................................................2312.002.00-----------------------2.00---------------------------------------------------------------------------
.................................................................................................................................................................................................TTTGGAATTGTGTTTTTATT.....................................202.000.00---------2.00-----------------------------------------------------------------------------------------
.......................................................GAAAAACAAGGAGCATTTATT..............................................................................................................................................................................2112.002.00----------------------2.00----------------------------------------------------------------------------
.AGGCGACCGTGGCCATGCAGA....................................................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------1.00------------------------------
..........................................................................................GCCGGGGAAGGAGGCCGGCGGCGCGCAGGGGTG...............................................................................................................................3311.001.00--------------------------------------------------------------------------------------------1.00------
.....................................................................................................................................................................................................................ATGGGCGGTTGCGTCGGAAACA...............2211.001.00-----------------------------------------------------------------------1.00---------------------------
............................................................................................................................................................................................................................GTTGCGTCGGAAACACGG............1811.001.00---------------------1.00-----------------------------------------------------------------------------
..............................................................................................................................................TGTCCCGGGACGGTGGCGCCAG......................................................................................2211.001.00-------------------------1.00-------------------------------------------------------------------------
...........................................ATTTCAGGTCTGGAAAAACAAGGAG......................................................................................................................................................................................2511.001.00---------------1.00-----------------------------------------------------------------------------------
.................................................................................................................................................CCCGGGACGGTGGCGCCAG......................................................................................1911.001.00---------------------------------------1.00-----------------------------------------------------------
............................................................................................................................................................................................................................GTTGCGTCGGAAACACGGTT..........2011.001.00---1.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TGCGTCGGAAACACGGTTTTCAGAGGG.2711.001.00------------------------------------1.00--------------------------------------------------------------
.AGGCGACCGTGGCCATGCAGAGTGCTCTGTGA.........................................................................................................................................................................................................................3211.001.00------------------------------------------------------1.00--------------------------------------------
.................................................................................TTGGGAACTGCCGGGGCC.......................................................................................................................................................181.000.00------------------------------------------1.00--------------------------------------------------------
................................................................................................GAAGGAGGCCGGCGGCGCGCAGG...................................................................................................................................2311.001.00---------------------------------------------1.00-----------------------------------------------------
........................................................................................................................................................................................................................................ACACGGTTTTCAGAGGGC1811.001.00------------------------------1.00--------------------------------------------------------------------
.............................................................................................................................................CTGTCCCGGGACGGTGG............................................................................................1711.001.00-1.00-------------------------------------------------------------------------------------------------
............................................................................TATCTTTGGGAACTGCCGG...........................................................................................................................................................1911.001.00----1.00----------------------------------------------------------------------------------------------
...............................................CAGGTCTGGAAAAACAAGGAGCATT..................................................................................................................................................................................2511.001.00------------------------------------------------------------------------1.00--------------------------
...........................................................................................CCGGGGAAGGAGGCCGGCGGCA.........................................................................................................................................221.000.00------------------------1.00--------------------------------------------------------------------------
.......................................................................TTATTTATCTTTGGGAACTGC..............................................................................................................................................................2111.001.00----1.00----------------------------------------------------------------------------------------------
....................................................................................GGAACTGCCGGGGAAGGA....................................................................................................................................................1811.001.00--------1.00------------------------------------------------------------------------------------------
............................................................................................................................................................................................................GTTTTTCTAATGGGCGG.............................1711.001.00-----1.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GGGCGGTTGCGTCGGAAACAC..............2111.001.00----------------1.00----------------------------------------------------------------------------------
.AGGCGACCGTGGCCATGCAG.....................................................................................................................................................................................................................................2011.001.00-------1.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CGGTTGCGTCGGAAACACGG............2011.001.00------------------------------------------------1.00--------------------------------------------------
......ACCGTGGCCATGCAGAG...................................................................................................................................................................................................................................1711.001.00-----------------------------------------------------------------------------------------1.00---------
.........................................................................................TGCCGGGGAAGGAGGCCGG..............................................................................................................................................1911.001.00--------1.00------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CGGTTGCGTCGGAAACACGGTT..........2211.001.00----------------------------------------------------1.00----------------------------------------------
..................................................................................................................................................................................................................CTAATGGGCGGTTGCGT.......................1711.001.00-----------------------------------1.00---------------------------------------------------------------
...................................................................................................................................................................................................................................CGGAAACACGGTTTTCAGAGT..211.000.00----------1.00----------------------------------------------------------------------------------------
.........................................................................................................................................................................................GTTTTTAATTTGGAATTGTG.............................................2011.001.00---1.00-----------------------------------------------------------------------------------------------
...............................................................................................GGAAGGAGGCCGGCGGGCGA.......................................................................................................................................201.000.00----------------------------------------------------------------1.00----------------------------------
.......................................................................................................GCCGGCGGCGCGCAGGGG.................................................................................................................................1811.001.00-----1.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GGTTGCGTCGGAAACAC..............1711.001.001.00--------------------------------------------------------------------------------------------------
................................................................................TTTGGGAACTGCCGGGGAAGGAGGCCGG..............................................................................................................................................2811.001.00-----------------------------------------------------------------------------1.00---------------------
..................................................................................TGGGAACTGCCGGGGAAGG.....................................................................................................................................................1911.001.00---------------------------------------1.00-----------------------------------------------------------
..............................................................................................................................................................................................................TTTTCTAATGGGCGGTTGCGT.......................2111.001.00-----------1.00---------------------------------------------------------------------------------------
.........................................................................ATTTATCTTTGGGAACTGCCG............................................................................................................................................................2111.001.00---------------------------------------------------------------------------1.00-----------------------
.............................................................................................................................................................................................................................TTGCGTCGGAAACACGG............1711.001.00------------------------------------------------------------------1.00--------------------------------
.............................................................................ATCTTTGGGAACTGCCGG...........................................................................................................................................................1811.001.00-------------------------------------1.00-------------------------------------------------------------
................................AGTCACCGTTAATTTCAGGTCTG...................................................................................................................................................................................................2311.001.00----1.00----------------------------------------------------------------------------------------------
........................................................................................CTGCCGGGGAAGGAGGC.................................................................................................................................................1711.001.00------------------------------------------1.00--------------------------------------------------------
.........................................................................................................................................................................................................................GCGGTTGCGTCGGAAA.................1611.001.00----1.00----------------------------------------------------------------------------------------------
......ACCGTGGCCATGCAGAGTGCT...............................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------------------1.00-------------------------
...............ATGCAGAGTGCTCTGTGAGTCACCGT.................................................................................................................................................................................................................2611.001.00---------------------------------------------------------------------1.00-----------------------------
.................................................................................TTGGGAACTGCCGGGGAAGGA....................................................................................................................................................2111.001.00-------------------------------------------1.00-------------------------------------------------------
........................................................................................CTGCCGGGGAAGGAGGCCGGCGGCGCGCAGGGGTG...............................................................................................................................3511.001.00-1.00-------------------------------------------------------------------------------------------------
......................................................................................AACTGCCGGGGAAGGAGGCCGG..............................................................................................................................................2211.001.00--------------------------------1.00------------------------------------------------------------------
....................................................................................GGAACTGCCGGGGAAGGAGGCCGGCGGCG.........................................................................................................................................2911.001.00------------------1.00--------------------------------------------------------------------------------
......................................................................................AACTGCCGGGGAAGGAGGC.................................................................................................................................................1911.001.00-----------1.00---------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GTCGGAAACACGGTTTTCAGC....211.000.00--------------------------1.00------------------------------------------------------------------------
.AGGCGACCGTGGCCATGCA......................................................................................................................................................................................................................................1911.001.00--------------------------------------1.00------------------------------------------------------------
..................................................................................TGGGAACTGCCGGGGT........................................................................................................................................................161.000.00----1.00----------------------------------------------------------------------------------------------
.......................................................................................ACTGCCGGGGAAGGAGGCC................................................................................................................................................1911.001.00------------------------------1.00--------------------------------------------------------------------
...............................GAGTCACCGTTAATTTCAGGTCTGG..................................................................................................................................................................................................2511.001.00----------1.00----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................GCGTCGGAAACACGGTTT.........1811.001.001.00--------------------------------------------------------------------------------------------------
.................................................................................TTGGGAACTGCCGGGGAAGG.....................................................................................................................................................2011.001.00--------------1.00------------------------------------------------------------------------------------
.........GTGGCCATGCAGAGTGCT...............................................................................................................................................................................................................................1811.001.00-------------------------------------------------------------------------------------------1.00-------
.................GCAGAGTGCTCTGTGAGTCACC...................................................................................................................................................................................................................2211.001.00----------------------------------------------------------------------------------1.00----------------
.......................................................................................ACTGCCGGGGAAGGAGGCCGG..............................................................................................................................................2111.001.00-------------------------------------------------------1.00-------------------------------------------
....CGACCGTGGCCATGCAGAGTGCTC..............................................................................................................................................................................................................................2411.001.00--------------------------------------------------------------------------------1.00------------------
..................................................................................................AGGAGGCCGGCGGCGGCG......................................................................................................................................181.000.00-----------------------------------------------------1.00---------------------------------------------
.......................................................................................................................GGTGTGGCTGGGAAAGGCCGC..............................................................................................................2111.001.00-------------------------------1.00-------------------------------------------------------------------
.......................................................................................ACTGCCGGGGAAGGAGGCCGGCG............................................................................................................................................2311.001.00----------------------------------------------------------------------1.00----------------------------
.......................................................................................................................................GCCGCGCTGTCCCGGGACGG...............................................................................................2011.001.00-------1.00-------------------------------------------------------------------------------------------
................................................................................TTTGGGAACTGCCGGGGAAGGAGG..................................................................................................................................................2411.001.00----------------------------------------1.00----------------------------------------------------------
.......................................................................................ACTGCCGGGGAAGGAGG..................................................................................................................................................1721.001.00------------------------------------------------------------------------------------------------0.50-0.50
.............................................................................ATCTTTGGGAACTGCCGGCGA........................................................................................................................................................2111.001.00-------------------------------------------1.00-------------------------------------------------------
....................................ACCGTTAATTTCAGGTCTG...................................................................................................................................................................................................1911.001.00----------1.00----------------------------------------------------------------------------------------
....................................................................................................................................................GGGACGGTGGCGCCATGG....................................................................................181.000.00-----------------------------------------------------------------1.00---------------------------------
.........................................................................................................................................................................................................................GCGGTTGCGTCGGAAACAC..............1911.001.00-1.00-------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................GGCGGTTGCGTCGGAAACAC..............2011.001.001.00--------------------------------------------------------------------------------------------------
................................................AGGTCTGGAAAAACAAGGAG......................................................................................................................................................................................2011.001.00---1.00-----------------------------------------------------------------------------------------------
........................................................................................CTGCCGGGGAAGGAGGCCGG..............................................................................................................................................2011.001.00------1.00--------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TGCGTCGGAAACACGGTTTTC.......2111.001.00------------------------------------------------------------------------------------1.00--------------
..........................................................................TTTATCTTTGGGAACTGCCGGGG.........................................................................................................................................................2311.001.00-----------------------------------------------1.00---------------------------------------------------
........................................................................................................................GTGTGGCTGGGAAAGGC.................................................................................................................1730.670.670.67--------------------------------------------------------------------------------------------------
.........................................................................ATTTATCTTTGGGAACTG...............................................................................................................................................................1820.500.50-----------0.50---------------------------------------------------------------------------------------
..........................................................................................GCCGGGGAAGGAGGCCGG..............................................................................................................................................1820.500.50-----0.50---------------------------------------------------------------------------------------------
................................................................................TTTGGGAACTGCCGGGG.........................................................................................................................................................1720.500.50-----------------------------0.50---------------------------------------------------------------------
....................................................CTGGAAAAACAAGGAGCATT..................................................................................................................................................................................2020.500.50-------------------------------------------------------------------------------------------------0.50-
................................................................................TTTGGGAACTGCCGGG..........................................................................................................................................................1620.500.50-----------------------------0.50---------------------------------------------------------------------

Antisense strand
GAGGCGACCGTGGCCATGCAGAGTGCTCTGTGAGTCACCGTTAATTTCAGGTCTGGAAAAACAAGGAGCATTTATTTATCTTTGGGAACTGCCGGGGAAGGAGGCCGGCGGCGCGCAGGGGTGTGGCTGGGAAAGGCCGCGCTGTCCCGGGACGGTGGCGCCAGCCCCGCCGCTCAGTTCTCCGGGTTTTTAATTTGGAATTGTGTTTTTCTAATGGGCGGTTGCGTCGGAAACACGGTTTTCAGAGGGC
...................................................(((((.....((((((...........)))))).......)))))...((.(((.((((.(((.....(((((((((......)))))))))(((....))).))).)))).)))))..................................................................................
..................................................51....................................................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR343336SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR040030(GSM532915)
G013N. (cervix)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR040022(GSM532907)
G575N. (cervix)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532879(GSM532879)
G659N. (cervix)		SRR038862(GSM458545)
MM472. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR040019(GSM532904)
G701T. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)		SRR343335SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040024(GSM532909)
G613N. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
.............................................................................................................................................................................AAACCCGGAGAACTGA............................................................. 1619.009.00-------------3.00---3.00--1.00-----------------------------------------------------1.00---------------1.00--------
.......................ACGGTGACTCACAGAGCA................................................................................................................................................................................................................. 1813.003.00-------1.00----------------------------------------------------1.00-1.00------------------------------------
.............................................................................................................................................................................TCAGTTCTCCGGGTTTAAC.......................................................... 193.000.00--------------------------1.00-----------1.00-----1.00------------------------------------------------------
....GCACTCTGCATGGCCACGGTCG................................................................................................................................................................................................................................ 2212.002.00--------------2.00------------------------------------------------------------------------------------
............CACAGAGCACTCTGCATGGC.......................................................................................................................................................................................................................... 2012.002.00--------------------1.00-------------------1.00----------------------------------------------------------
............AGAGCACTCTGCATGGC............................................................................................................................................................................................................................. 1712.002.00---------------------1.00-------------------------------------1.00---------------------------------------
.........................TAACGGTGACTCACAGAG............................................................................................................................................................................................................... 1812.002.00----------------1.00-1.00--------------------------------------------------------------------------------
.............................................................................................................................................................................TCAGTTCTCCGGGTTTA............................................................ 172.000.00---------------------------------------------------1.00-----------1.00-----------------------------------
.............................................................................................................................................................................TCAGTTCTCCGGGTTAAC........................................................... 182.000.00---------------------------0.50----------------0.50---------------------------------1.00--------------------
.........................AACGGTGACTCACAGAG................................................................................................................................................................................................................ 1712.002.00------2.00--------------------------------------------------------------------------------------------
............ACAGAGCACTCTGCATGGC........................................................................................................................................................................................................................... 1912.002.00------1.00--------1.00-----------------------------------------------------------------------------------
.............................................................................................................................................................................TCAGTTCTCCGGGTTAACA.......................................................... 191.500.00---------------------------1.00------------------0.50----------------------------------------------------
................................................................................................................................................................................GTTCTCCGGGTTTTTAGGA....................................................... 191.000.00---------------------------------------------------------------------------------1.00-----------------
.........................................................................................................................................................................ACCCGGAGAACTGAGCGG............................................................... 1811.001.00----------------------------------1.00----------------------------------------------------------------
..................GGTGACTCACAGAGCACTCTG................................................................................................................................................................................................................... 2111.001.00--------------------------------------------------1.00------------------------------------------------
........................ATTAACGGTGACTCACAGAGC............................................................................................................................................................................................................. 2111.001.00----1.00----------------------------------------------------------------------------------------------
........................TAACGGTGACTCACAGAGC............................................................................................................................................................................................................... 1911.001.00-------1.00-------------------------------------------------------------------------------------------
...ACTCTGCATGGCCACGGTCGC.................................................................................................................................................................................................................................. 2111.001.00-------1.00-------------------------------------------------------------------------------------------
..................................................................................................AGGAGGCCGGCGGCGGCT...................................................................................................................................... 181.000.00-------------------------------------------------------------1.00-------------------------------------
..........ACTCACAGAGCACTCTGCATGGCCA....................................................................................................................................................................................................................... 2511.001.00-1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................GCGCCACCGTCCCGGGACAGCG......................................................................................... 2211.001.00----1.00----------------------------------------------------------------------------------------------
..............GACTCACAGAGCACTCTGCATG...................................................................................................................................................................................................................... 2211.001.00---------------1.00-----------------------------------------------------------------------------------
.........CTCACAGAGCACTCTGCATGGCCAC........................................................................................................................................................................................................................ 2511.001.00--------------------1.00------------------------------------------------------------------------------
..................................................................................................AGGAGGCCGGCGGCGCGGGGC................................................................................................................................... 211.000.00--------------------------------1.00------------------------------------------------------------------
........................AACGGTGACTCACAGAGC................................................................................................................................................................................................................ 1811.001.00-1.00-------------------------------------------------------------------------------------------------
.............................................................................................................................................................................TCAGTTCTCCGGGTTTAA........................................................... 181.000.00-----------------------------------------1.00---------------------------------------------------------
.............GACTCACAGAGCACTCTGCATGG...................................................................................................................................................................................................................... 2311.001.00----------------------------------------------------------------------------1.00----------------------
............GTGACTCACAGAGCACTCTGCATGGC.................................................................................................................................................................................................................... 2611.001.00------------1.00--------------------------------------------------------------------------------------
.......................AACGGTGACTCACAGAGCA................................................................................................................................................................................................................ 1911.001.00---------------------------------------------------------------------------------------1.00-----------
....................................AGACCTGAAATTAACGGT.................................................................................................................................................................................................... 1811.001.00----------------------------------------------------------------------------------------------1.00----
.................................CTGAAATTAACGGTGAC........................................................................................................................................................................................................ 1711.001.00----------------------------------------------------------1.00----------------------------------------
.............CTCACAGAGCACTCTGCATGG........................................................................................................................................................................................................................ 2111.001.00-----------------------------------------1.00---------------------------------------------------------
.................................................................................................................................................................CAGCCCCGCCGCTCAAGC....................................................................... 181.000.00-------------------------------------------------------------------------------1.00-------------------
............TCACAGAGCACTCTGCATGGC......................................................................................................................................................................................................................... 2111.001.00------1.00--------------------------------------------------------------------------------------------
.....CACTCTGCATGGCCACGGTC................................................................................................................................................................................................................................. 2011.001.00-------------------------------------------------------------------------------------1.00-------------
.............................................................................................................................................................................TCAGTTCTCCGGGTTA............................................................. 161.000.00------------0.50--------0.50-----------------------------------------------------------------------------
..................GACTCACAGAGCACTCTG...................................................................................................................................................................................................................... 1811.001.00----------------1.00----------------------------------------------------------------------------------
............................AGACCTGAAATTAACGGTGACTCACA.................................................................................................................................................................................................... 2611.001.00---------------------------------------------------------------------------------------------1.00-----
......CACAGAGCACTCTGCATGGCCACGGT.......................................................................................................................................................................................................................... 2611.001.00-------------------1.00-------------------------------------------------------------------------------
............CAGAGCACTCTGCATGGC............................................................................................................................................................................................................................ 1811.001.00-------------------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................................TCAGTTCTCCGGGTTAC............................................................ 170.500.00----------------------------------------------0.50----------------------------------------------------
.............................................................................................................................................................................AACCCGGAGAACTGA.............................................................. 1520.500.50-----------------------------------------------------------------------------------------------0.50---
.............................................................................................................................................................................TCAGTTCTCCGGGTTAAT........................................................... 180.500.00---------------------------0.50-----------------------------------------------------------------------