ID: uc010zqk.1_intron_1_0_chr20_3778397_f.3p
GENE: (2)
chr20:3778859-3779108+


(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(12)
CELL-LINE 		(2)
CERVIX 		(2)
LIVER 		(3)
OTHER 		(3)
SKIN 		(1)
UTERUS

Sense strand
GAGTGGAGCCCTGTACCGTCTGGGGGACGATGTGTCAGCTCTCAGGGTCCATGGTTGGGTTTTTGTTTCATTTTCTAATGTGTCAAAGTCCAAACTAGAAACTGTTTTTTTTTTTTTTTTTTTTTTCATATTGGGACATGGTGGGGGAAAGAATACAGAAAGTGCCACTACTTTCAAACCAAGGTGCTCTGTCCCCTCAGGTCTCTGCATGGATTCCCCCAGCCCTATGGACCCCCACATGGCGGAGCAG
...................................................(((((.((.(((((...((((....))))...))))).)).))))).........................................................................................................................................................
..................................................51............................................................................129.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040019(GSM532904)
G701T. (cervix)		SRR189787SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTAAG.............................................................................................................................2514.000.0012.001.001.00------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTAAAG..........................................................................................................................2814.000.007.00-7.00------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTAAG..........................................................................................................................2813.000.009.00-4.00------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCGG...........................................................................................................................2713.000.009.004.00-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTAAAG.............................................................................................................................2511.000.004.00-7.00------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCTGG..........................................................................................................................288.000.006.001.00-------------1.00-----------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTCTGG............................................................................................................................267.000.006.001.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTGG............................................................................................................................277.000.004.003.00-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTCGG..............................................................................................................................246.000.002.004.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTCGG.............................................................................................................................265.000.003.002.00-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCGG..........................................................................................................................285.000.004.001.00-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTCGG.............................................................................................................................254.000.004.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTAAAA..........................................................................................................................283.000.002.00-1.00------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCAAG..........................................................................................................................283.000.002.00-1.00------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCTTAG.......................................................................................................................293.000.001.00-2.00------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCACC........................................................................................................................283.000.002.001.00-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTAG............................................................................................................................263.000.003.00--------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGTTG.......................................................................................................................293.000.002.00---1.00----------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTAC............................................................................................................................262.000.002.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCAG..........................................................................................................................282.000.001.00----1.00---------------------
....................................................................................................................TTTTTTTTTTCATATTGGGACATGGTGGGG........................................................................................................3012.002.00--2.00------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGGGG.......................................................................................................................292.000.001.001.00-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTCGAG............................................................................................................................262.000.001.001.00-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCTAG..........................................................................................................................282.000.00--2.00------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGG.........................................................................................................................272.000.002.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTATC..................................................................................................................................212.000.001.001.00-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTAC..........................................................................................................................282.000.002.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTCTT.............................................................................................................................252.000.00-2.00-------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGAC........................................................................................................................282.000.002.00--------------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCGAC........................................................................................................................272.000.002.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCTGG.........................................................................................................................292.000.002.00--------------------------
......................................................................................................................................................................................................AGGTCTCTGCATGGATTC..................................1812.002.00---------2.00-----------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTATC.............................................................................................................................262.000.002.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTCGG...........................................................................................................................282.000.002.00--------------------------
...........................................................................................................TTTTTTTTTTTTTTTTTTTCATAAAAG....................................................................................................................272.000.00--1.00--1.00---------------------
.............................................................................................................TTTTTTTTTTTTTTTTTCATATTG.....................................................................................................................2461.671.67---1.00-0.50-0.17-------------------
.........................................................................................................TTTTTTTTTTTTTTTTTTTTTCATATTG.....................................................................................................................2831.671.67---0.67-0.67-0.33-------------------
............................................................................................................TTTTTTTTTTTTTTTTTTCATATTG.....................................................................................................................2551.601.60---0.800.400.40---------------------
...........................................................................................................TTTTTTTTTTTTTTTTTTTCATATTG.....................................................................................................................2651.601.60---1.200.200.20---------------------
..............................................................................................................TTTTTTTTTTTTTTTTCATATTG.....................................................................................................................2361.331.33---0.830.330.17---------------------
............................................................TTTTGTTTCATTTTCGC.............................................................................................................................................................................171.000.00-1.00-------------------------
.........................................................................................................TTTTTTTTTTTTTTTTTTTTTCATATTTAAG..................................................................................................................311.000.00-------1.00-------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTCTGG............................................................................................................................271.000.001.00--------------------------
.........................................................................................................TTTTTTTTTTTTTTTTTTTTTCATAATTG....................................................................................................................291.000.00-------1.00-------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCGGG........................................................................................................................271.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTATC............................................................................................................................271.000.00-1.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTTCGAG.........................................................................................................................301.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTCCCA............................................................................................................................261.000.001.00--------------------------
...............................................................................................................................................................................................................CATGGATTCCCCCAGCCCTATGGACCCCC..............2911.001.00----------1.00----------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTATCT.........................................................................................................................291.000.00--1.00------------------------
.....................................................................................................CTGTTTTTTTTTTTTTTTTTTTTCAAG..........................................................................................................................271.000.001.00--------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCTGCC.......................................................................................................................291.000.00-1.00-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCAAG........................................................................................................................3021.000.500.50-0.50------------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCATGG.......................................................................................................................281.000.00-1.00-------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGGAC.......................................................................................................................291.000.001.00--------------------------
.......................................................................................GTCCAAACTAGAAACTGTTTTTTT...........................................................................................................................................2411.001.00--------------------1.00------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCTTG.........................................................................................................................291.000.001.00--------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGGTG.......................................................................................................................291.000.001.00--------------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCAATC.......................................................................................................................281.000.00--1.00------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTGGG...........................................................................................................................281.000.001.00--------------------------
.........................................................................................................TTTTTTTTTTTTTTTTTTTTTCATGTG......................................................................................................................271.000.00-----1.00---------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCGAG.........................................................................................................................291.000.001.00--------------------------
..........................................................................................................TTTTTTTTTTTTTTTTTTTTCATGGTT.....................................................................................................................271.000.001.00--------------------------
.....................................................................................................CTGTTTTTTTTTTTTTTTTTTTTAGAG..........................................................................................................................271.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTAAGT.............................................................................................................................251.000.00--1.00------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGGAG.......................................................................................................................291.000.001.00--------------------------
..................................................................................................AAACTGTTTTTTTTTTTTTTCTTT................................................................................................................................241.000.00--1.00------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTTCGG..........................................................................................................................291.000.00-1.00-------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCATTTTG.....................................................................................................................311.000.00-1.00-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTAAAC.........................................................................................................................291.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTATC..............................................................................................................................241.000.001.00--------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCTAG........................................................................................................................281.000.001.00--------------------------
.....................................................................................................CTGTTTTTTTTTTTTTTTTTTTTCCAG..........................................................................................................................271.000.00--1.00------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTAAC.........................................................................................................................291.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCC..........................................................................................................................2831.000.330.670.33-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTATCT............................................................................................................................261.000.001.00--------------------------
..........................................................................................................TTTTTTTTTTTTTTTTTTTTCATACCG.....................................................................................................................271.000.00--1.00------------------------
..........................................................................................................TTTTTTTTTTTTTTTTTTTTCATAAACA....................................................................................................................281.000.00----1.00----------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTATCT...........................................................................................................................281.000.001.00--------------------------
...........................CGATGTGTCAGCTCTCAGGGTCCAT......................................................................................................................................................................................................2511.001.00---------------------1.00-----
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTCAGT............................................................................................................................261.000.00-1.00-------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCTTGG.......................................................................................................................291.000.001.00--------------------------
.................................................................................................................................................................................................................................TATGGACCCCCACATGGCGGAGC..2311.001.00-----------------------1.00---
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCACTC.......................................................................................................................291.000.00-1.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTATTT............................................................................................................................271.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTAGAG..........................................................................................................................291.000.001.00--------------------------
..........................................................................................................TTTTTTTTTTTTTTTTTTTTCATGCCC.....................................................................................................................271.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTATCT.............................................................................................................................261.000.001.00--------------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCAAAG.......................................................................................................................281.000.00---1.00-----------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTACT..........................................................................................................................281.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCCGG..........................................................................................................................281.000.001.00--------------------------
..................................................................................................AAACTGTTTTTTTTTTTTTTTTTGT...............................................................................................................................251.000.00-1.00-------------------------
.....................................................................................................CTGTTTTTTTTTTTTTTTTTTTTTTCCCGG.......................................................................................................................301.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTCGGG...............................................................................................................................241.000.001.00--------------------------
...............................................................................................................TTTTTTTTTTTTTTTCATATCCG....................................................................................................................231.000.00----1.00----------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCAGGG.......................................................................................................................291.000.001.00--------------------------
..........................................................................................................TTTTTTTTTTTTTTTTTTTTCATATTTTCA..................................................................................................................301.000.00-------1.00-------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCTTGC.......................................................................................................................291.000.001.00--------------------------
..........................................................................................................TTTTTTTTTTTTTTTTTTTTCATATCAG....................................................................................................................281.000.00-------1.00-------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTTTATTT........................................................................................................................311.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTAT..........................................................................................................................281.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCTTG..........................................................................................................................281.000.00-1.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTCCGG............................................................................................................................271.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTGTGG...........................................................................................................................281.000.001.00--------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCAGTTG......................................................................................................................301.000.001.00--------------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCGGCC.......................................................................................................................281.000.001.00--------------------------
.........................................................................................................TTTTTTTTTTTTTTTTTTTTTCATGGGG.....................................................................................................................281.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTACAG........................................................................................................................301.000.00--1.00------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTAT............................................................................................................................261.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCAG...........................................................................................................................271.000.00---1.00-----------------------
............................................................................................................TTTTTTTTTTTTTTTTTTCATATTACAG..................................................................................................................281.000.00----1.00----------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCGGG..........................................................................................................................281.000.00-1.00-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTCTAG.............................................................................................................................251.000.001.00--------------------------
........................................................................................................TTTTTTTTTTTTTTTTTTTTTTCATACTTG....................................................................................................................301.000.00----1.00----------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTATC..............................................................................................................................251.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTACCT.........................................................................................................................291.000.001.00--------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCTAAG.......................................................................................................................291.000.00--1.00------------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCGGC........................................................................................................................271.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTAAAA.........................................................................................................................291.000.00-1.00-------------------------
...............................................................................................................................................................................AAACCAAGGTGCTCTGTCC........................................................1911.001.00-------------1.00-------------
.............................................................................................................TTTTTTTTTTTTTTTTTCATACCTG....................................................................................................................251.000.00-1.00-------------------------
................................................................................................................TTTTTTTTTTTTTTCATACATG....................................................................................................................221.000.00----1.00----------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTCG............................................................................................................................271.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTTTCTCC........................................................................................................................311.000.00-1.00-------------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCGTT........................................................................................................................271.000.001.00--------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCAGAGG......................................................................................................................301.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTACC...........................................................................................................................281.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTATC...........................................................................................................................271.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTCCT.............................................................................................................................251.000.00--1.00------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGCC........................................................................................................................281.000.00-1.00-------------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCAATAA......................................................................................................................291.000.00--1.00------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCTT...........................................................................................................................271.000.00--1.00------------------------
.........................................................................................................TTTTTTTTTTTTTTTTTTTTTCATATCAAG...................................................................................................................301.000.00---1.00-----------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTGGA...........................................................................................................................281.000.00-1.00-------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGCT........................................................................................................................281.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTATC.............................................................................................................................251.000.00-1.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTCTGG..........................................................................................................................291.000.00-1.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTCATC................................................................................................................................231.000.001.00--------------------------
...................................................TGGTTGGGTTTTTGTTTTCTT..................................................................................................................................................................................211.000.00-1.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTCC............................................................................................................................271.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCTTT.........................................................................................................................291.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTCTTT............................................................................................................................261.000.001.00--------------------------
...........................................................................................................TTTTTTTTTTTTTTTTTTTCATAGGGC....................................................................................................................271.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTACT.........................................................................................................................291.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTATCC..........................................................................................................................281.000.00-1.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTCCTT...........................................................................................................................281.000.00----1.00----------------------
..........................................................................................................TTTTTTTTTTTTTTTTTTTTCATAATG.....................................................................................................................271.000.00-----1.00---------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTATG..........................................................................................................................281.000.00-1.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTCTTG..........................................................................................................................291.000.00--1.00------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTCCGG.............................................................................................................................251.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTCAT.............................................................................................................................251.000.00-1.00-------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGACG.......................................................................................................................291.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTCTGG...........................................................................................................................281.000.001.00--------------------------
........................................................................................................TTTTTTTTTTTTTTTTTTTTTTCATATCAG....................................................................................................................301.000.00---1.00-----------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTCGGG.............................................................................................................................251.000.00-1.00-------------------------
............................................................................................................TTTTTTTTTTTTTTTTTTCATAGATG....................................................................................................................261.000.00-1.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTCGG............................................................................................................................271.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTAAAT........................................................................................................................301.000.001.00--------------------------
...........................................................................................................TTTTTTTTTTTTTTTTTTTCATAGGT.....................................................................................................................261.000.00--1.00------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCCTT.........................................................................................................................291.000.001.00--------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCTGGG.......................................................................................................................291.000.00-1.00-------------------------
................................................................................................................TTTTTTTTTTTTTTCATATCGAG...................................................................................................................231.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTTTATCT........................................................................................................................311.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTAGGG........................................................................................................................301.000.00-1.00-------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTCT............................................................................................................................271.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTTTAT..........................................................................................................................291.000.00---1.00-----------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCAAGG.......................................................................................................................291.000.001.00--------------------------
........................................................................................................TTTTTTTTTTTTTTTTTTTTTTCATGC.......................................................................................................................271.000.00-1.00-------------------------
......................................................................................................................TTTTTTTTCATATTGGGACG................................................................................................................201.000.00-1.00-------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCACG........................................................................................................................281.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTTCAT..........................................................................................................................291.000.001.00--------------------------
........................................................................................................TTTTTTTTTTTTTTTTTTTTTTCATGCG......................................................................................................................281.000.00--1.00------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCTG...........................................................................................................................271.000.00-1.00-------------------------
..........................................................................................................TTTTTTTTTTTTTTTTTTTTCATGCC......................................................................................................................261.000.001.00--------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGGCG.......................................................................................................................291.000.001.00--------------------------
.............................................................................................................TTTTTTTTTTTTTTTTTCATATCTG....................................................................................................................251.000.00----1.00----------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGGCT.......................................................................................................................291.000.001.00--------------------------
........................................................................................................TTTTTTTTTTTTTTTTTTTTTTCATATTAG....................................................................................................................301.000.00----1.00----------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCAACG.......................................................................................................................281.000.001.00--------------------------
........................................................................................................TTTTTTTTTTTTTTTTTTTTTTCATACGTC....................................................................................................................301.000.00---1.00-----------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCT............................................................................................................................261.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTAAG............................................................................................................................271.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCTT..........................................................................................................................281.000.001.00--------------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCGCG........................................................................................................................281.000.001.00--------------------------
..................................................................................................AAACTGTTTTTTTTTTTTTTTTTTTTTTTG..........................................................................................................................301.000.00--1.00------------------------
..........................................................................................................TTTTTTTTTTTTTTTTTTTTCATATTAG....................................................................................................................281.000.00---1.00-----------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTAT.............................................................................................................................261.000.00-----1.00---------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTTTTTCGG.........................................................................................................................301.000.001.00--------------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCTTGC.......................................................................................................................281.000.001.00--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTCCGG............................................................................................................................261.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTCGG................................................................................................................................231.000.001.00--------------------------
...................................................................................................AACTGTTTTTTTTTTTTTTTTTTCCCT............................................................................................................................271.000.00-1.00-------------------------
...............................................................................................................TTTTTTTTTTTTTTTCATATTG.....................................................................................................................2270.860.86---0.57-0.29---------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCGG.........................................................................................................................2930.670.330.67--------------------------
..........................................................................................................TTTTTTTTTTTTTTTTTTTTCATATTG.....................................................................................................................2730.670.67---0.33---0.33-------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCTGG........................................................................................................................3030.670.330.67--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCA..........................................................................................................................2820.500.50--0.50------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCAG.........................................................................................................................2920.500.50---0.50-----------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCGCC........................................................................................................................3030.330.330.33--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCCGG........................................................................................................................3030.330.33-0.33-------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCCCTT.......................................................................................................................3130.330.330.33--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCTGGG.......................................................................................................................3130.330.330.33--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCTG.........................................................................................................................2930.330.33---0.33-----------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTCCC.........................................................................................................................2930.330.330.33--------------------------
....................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTTC...........................................................................................................................2730.330.330.33--------------------------
........................................................................................................TTTTTTTTTTTTTTTTTTTTTTCATATTG.....................................................................................................................2930.330.33-----0.33---------------------

Antisense strand
GAGTGGAGCCCTGTACCGTCTGGGGGACGATGTGTCAGCTCTCAGGGTCCATGGTTGGGTTTTTGTTTCATTTTCTAATGTGTCAAAGTCCAAACTAGAAACTGTTTTTTTTTTTTTTTTTTTTTTCATATTGGGACATGGTGGGGGAAAGAATACAGAAAGTGCCACTACTTTCAAACCAAGGTGCTCTGTCCCCTCAGGTCTCTGCATGGATTCCCCCAGCCCTATGGACCCCCACATGGCGGAGCAG
...................................................(((((.((.(((((...((((....))))...))))).)).))))).........................................................................................................................................................
..................................................51............................................................................129.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040019(GSM532904)
G701T. (cervix)		SRR189787SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
.....CCAGACGGTACAGGGCTC................................................................................................................................................................................................................................... 1812.002.00------------1.00-----------1.00--
..................................................................................................AAACTGTTTTTTTTTTTTTTTTTTTTT............................................................................................................................. 271.000.00--------1.00------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCTAC........................................................................................................................ 281.000.00------1.00--------------------
.................................ATGGACCCTGAGAGCTGAC...................................................................................................................................................................................................... 1911.001.00----------------1.00----------
....................................................................................................AAAAAAAAAAAAAAAAACAGT................................................................................................................................. 2101.001.00-----------------1.00---------
...........................................................................................................................................................................................................TCTGCATGGATTCCCCCAAGTA......................... 221.000.00-----------1.00---------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCTCTT....................................................................................................................... 291.000.00------1.00--------------------
......................................................................................................TGTTTTTTTTTTTTTTTTTTTTTTCCAT........................................................................................................................ 281.000.00--------------1.00------------
...............................................................................................................TTTTTTTTTTTTTTTCATATAGT.................................................................................................................... 231.000.00-------------------1.00-------
.........................................................................................................TTTTTTTTTTTTTTTTTTTTTCATCATT..................................................................................................................... 281.000.00------1.00--------------------
.........................................................................................................TTTTTTTTTTTTTTTTTTTTTCATTTG...................................................................................................................... 271.000.00------1.00--------------------
....................................................................................................AAAAAAAAAAAAAAAAAAACAGT............................................................................................................................... 2301.001.00----------------------1.00----
..................................................................................................AAACTGTTTTTTTTTTTTTTTTTTTTGAAG.......................................................................................................................... 301.000.00--------1.00------------------
.......................................................................................................GTTTTTTTTTTTTTTTTTTTTTTCCATT....................................................................................................................... 281.000.00------1.00--------------------
................................................................................................AGAAACTGTTTTTTTTTTTTTTTTTTTTTGT........................................................................................................................... 311.000.00--------1.00------------------
...............................................................................................................TTTTTTTTTTTTTTTCATATTTT.................................................................................................................... 231.000.00------------------1.00--------
..................................ATGGACCCTGAGAGCTGA...................................................................................................................................................................................................... 1820.500.50-------------------------0.50-
.................................................................................................................CCAATATGAAAAAAAAAAAAA.................................................................................................................... 2160.170.17--------------------------0.17