ID: uc010zmr.1_intron_28_0_chr2_234468571_r.5p
GENE: (2)
chr2:234471182-234471431-


(2)
BRAIN
(12)
CELL-LINE
(2)
CERVIX
(3)
HEART
(2)
HELA
(1)
LIVER
(2)
OTHER
(15)
SKIN
(1)
XRN.ip

Sense strand
GCCCAGAAGAGCTTGGTTTGTTTGAAGATAAGGATAAACCCGATGCAAAGGTATTTTTATTATTATTATTATTATACTTTAAGTTTTAGGGTACATGTGCACAATGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAACTCATCATCTAGCATTAGGTATACCTCCCAATGCTATCCCTCCCCCCTCCCCCCAACCCACAACAGTCCCCAGAGTGTGATGTTCCCCT
..........................................................................(((((((.....))))))).((.(((((...))))).)).........................................................................................................................................
..................................................51..............................................................115.....................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................TTTTATTATTATTATTATTATATG............................................................................................................................................................................2430.000.0019.005.004.00--1.00------1.00----------------------------
............................................................................CTTTAAGTTTTAGGGTACATGTGCACTCTG................................................................................................................................................303.000.00---------1.00-------------1.00--1.00--------------
....................................................................................................................................................................................................................................CCCCAGAGTGTGATGTAGGG..202.000.00------2.00----------------------------------
.....................................................................................................................................................................................................................................CCCAGAGTGTGATGTAGGG..192.000.00------2.00----------------------------------
.....................................................TTTTTATTATTATTATTATTATATTAG..........................................................................................................................................................................272.000.001.00----1.00-----------------------------------
.......................................................TTTATTATTATTATTATTATACTTTAAT.......................................................................................................................................................................282.000.00-1.001.00--------------------------------------
..................................................................................GTTTTAGGGTACATGTGCACTCTG................................................................................................................................................242.000.00-------------1.00-----------1.00---------------
.......................................................................................AGGGTACATGTGCACAATGTGCAGGCCAG......................................................................................................................................292.000.00----2.00------------------------------------
............................................................................................ACATGTGCACAATGTGCAGCTTG.......................................................................................................................................232.000.00----2.00------------------------------------
........................................................TTATTATTATTATTATTATACTTATAG.......................................................................................................................................................................271.000.00-----1.00-----------------------------------
.......................................................................................................................................................................ATCTAGCATTAGGTATACCCCCA............................................................231.000.00---1.00-------------------------------------
...................................................TATTTTTATTATTATTATTAAATG...............................................................................................................................................................................241.000.00-1.00---------------------------------------
..............................................................................TTAAGTTTTAGGGTACGCGC........................................................................................................................................................201.000.00---1.00-------------------------------------
................................................................................................................................ACATGTGCCATGCTGAAGA.......................................................................................................191.000.00-----------------1.00-----------------------
.............................................................................................................................................................................................CAATGCTATCCCTCCCCCGGC........................................211.000.00----------1.00------------------------------
.....................................................TTTTTATTATTATTATTATTATACTTTAAT.......................................................................................................................................................................301.000.00--1.00--------------------------------------
...........................................................................................................................................................................................CCCAATGCTATCCCTCCCCCCTCCAG.....................................261.000.00---------------------------------1.00-------
..............................AGGATAAACCCGATGCAAAGGTTCG...................................................................................................................................................................................................251.000.00-----------1.00-----------------------------
........................................................................................................................ATATGTATACATGTGCCATGCAGTG.........................................................................................................251.000.00----1.00------------------------------------
...................................................TATTTTTATTATTATTATTATTATG..............................................................................................................................................................................251.000.00-1.00---------------------------------------
..........................................................ATTATTATTATTATTATACTTCTAG.......................................................................................................................................................................251.000.00-----1.00-----------------------------------
......................................................TTTTATTATTATTATTATTATACTTTAAT.......................................................................................................................................................................291.000.00--1.00--------------------------------------
....................................................ATTTTTATTATTATTATTATTTTCG.............................................................................................................................................................................251.000.00--1.00--------------------------------------
..........................................................ATTATTATTATTATTATACTTCCAG.......................................................................................................................................................................251.000.00-----1.00-----------------------------------
.........................................................................................................................................................................................................................CCCACAACAGTCCCCCGCG..............191.000.00--------------------1.00--------------------
....................................................ATTTTTATTATTATTATTATTATACTTTAAT.......................................................................................................................................................................311.000.00-1.00---------------------------------------
......................................................................................................AATGTGCAGGTTAGTTACATGCGT............................................................................................................................241.000.00----1.00------------------------------------
..........................................................ATTATTATTATTATTATACTTCATG.......................................................................................................................................................................251.000.00-1.00---------------------------------------
..............................................................................................ATGTGCACAATGTGCAGCTGG.......................................................................................................................................211.000.00---1.00-------------------------------------
.................................................................................AGTTTTAGGGTACATGTGCACAATGTGCAGCC.........................................................................................................................................321.000.00---1.00-------------------------------------
.............................................................ATTATTATTATTATACTTAATG.......................................................................................................................................................................221.000.001.00----------------------------------------
.................................................................................................................................................................................................................CCCCCCAACCCACAACTAAC.....................201.000.00------------------------------1.00----------
..........................................................................................................................................................................................TCCCAATGCTATCCCTCCCCCCTGTA......................................261.000.00---------1.00-------------------------------
.....................................................TTTTTATTATTATTATTATTATACTCAAG........................................................................................................................................................................291.000.001.00----------------------------------------
....................................................ATTTTTATTATTATTATTATTATCATC...........................................................................................................................................................................271.000.00-----1.00-----------------------------------
.......................................................................................AGGGTACATGTGCACAATGTGCAGGTCAGC.....................................................................................................................................301.000.00---1.00-------------------------------------
.......................................................................................................ATGTGCAGGTTAGTTACATAGGA............................................................................................................................231.000.00--------------------------------1.00--------
....................................................ATTTTTATTATTATTATTATTATACTTTCAG.......................................................................................................................................................................311.000.001.00----------------------------------------
............................................................TATTATTATTATTATACTTCGCG.......................................................................................................................................................................231.000.001.00----------------------------------------
.....................................................................................................CAATGTGCAGGTTAGTTACTCTG..............................................................................................................................231.000.00------------------------------------1.00----
........................................................TTATTATTATTATTATTATACTAAG.........................................................................................................................................................................251.000.001.00----------------------------------------
...........................................................TTATTATTATTATTATACTTCTTG.......................................................................................................................................................................241.000.001.00----------------------------------------
..........................................................................................................................ATGTATACATGTGCCATGCTGGTTCGT.....................................................................................................271.000.00-----------------------------------1.00-----
...........................ATAAGGATAAACCCGATGCAAAG........................................................................................................................................................................................................2320.500.50---------------------------------------0.50-
...................................................TATTTTTATTATTATTATTATTATACTTT..........................................................................................................................................................................2990.220.22--0.22--------------------------------------
....................................................................................................................................................................ATCATCTAGCATTAGGTATACCTCCCAATG........................................................3080.120.12----------------------------------------0.12
...................................................TATTTTTATTATTATTATTATTATACTTTAAG.......................................................................................................................................................................3280.120.12--0.12--------------------------------------

Antisense strand
GCCCAGAAGAGCTTGGTTTGTTTGAAGATAAGGATAAACCCGATGCAAAGGTATTTTTATTATTATTATTATTATACTTTAAGTTTTAGGGTACATGTGCACAATGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAACTCATCATCTAGCATTAGGTATACCTCCCAATGCTATCCCTCCCCCCTCCCCCCAACCCACAACAGTCCCCAGAGTGTGATGTTCCCCT
..........................................................................(((((((.....))))))).((.(((((...))))).)).........................................................................................................................................
..................................................51..............................................................115.....................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.................................................................................AGTTTTAGGGTACATGCTG...................................................................................................................................................... 197.000.00--------2.00-2.00---1.00----------------1.00------1.00--
.................................................................................AGTTTTAGGGTACATGTGCACTG.................................................................................................................................................. 236.000.00-------3.001.00----1.00----1.00----------------------
.................................................................................AGTTTTAGGGTACATGTCTG..................................................................................................................................................... 202.000.00-------1.00-------1.00-------------------------
....................TTTGAAGATAAGGATAAAG................................................................................................................................................................................................................... 191.000.00------------1.00----------------------------
.................................................................................................................................................................................AGGTATACCTCCCAATGCC...................................................... 191.000.00-------------------------------------1.00---
...............................................................................................................................................................AACTCATCATCTAGCATTAGATG.................................................................... 231.000.00-----------1.00-----------------------------
.................................................................................................................................................................................................................................AGTCCCCAGAGTGTGATGTTCCCCTCCTG 291.000.00---1.00-------------------------------------
.........................................................................................................GTGCAGGTTAGTTACATATGTCAG......................................................................................................................... 241.000.00---------------------------1.00-------------
........................................................................................................................................................................................................................ACCCACAACAGTCCCGTT................ 181.000.00----------------1.00------------------------
.............................................................................................................................................AGTTAGTGGGTGCAGCGCACCA....................................................................................... 2201.001.00-----------------------------1.00-----------
..........................................................................................................................................................................................................CCCCCCTCCCCCCAACCAAG............................ 201.000.00----------------------------------1.00------
...................................................................................................................................................................................................................................TCCCCAGAGTGTGATTCGT.... 191.000.00-------------------1.00---------------------
......................................................................................................................................................................................................CCCTCCCCCCTCCCCCCACC................................ 201.000.00---1.00-------------------------------------
..........................................................................................GTACATGTGCACAATGTGCAAATA........................................................................................................................................ 241.000.00-----------1.00-----------------------------
.................................................................................AGTTTTAGGGTACATGTGCACAATGCTA............................................................................................................................................. 281.000.00---------1.00-------------------------------
.............................................................................................................................................GGGTGCAGCGCACCA.............................................................................................. 1501.001.00----------------------1.00------------------
............................................................................................................................................................................................................................ACAACAGTCCCCAGAGTGTCTG........ 221.000.00----------------------------1.00------------
.....................................................................................................................TACATATGTATACATGTGCCAT............................................................................................................... 221.000.00------------------------1.00----------------
....................................................................................................................................GTGCCATGCTGGTGCGCTGCACCCACTTCGG....................................................................................... 311.000.00---------------------1.00-------------------