ID: uc010zkv.1_intron_3_0_chr2_220097406_f
GENE: ANKZF1(4)
chr2:220097356-220097850+


(1)
B-CELL
(5)
BRAIN
(3)
BREAST
(7)
CELL-LINE
(5)
CERVIX
(7)
HEART
(2)
HELA
(2)
LIVER
(1)
OTHER
(14)
SKIN
(1)
XRN.ip

Sense strand
CCCAGGGCCAGTTTCTTTATGCCTACCGCTGTGTCCTAGGCCCTCATCAGGCAAGTGACAGTACAGGTTGCATGGCTAACCCCAGCCTTTTGTACACCCAGCCTAGATTTCCCTTAGCCTAGTGCATTTCTCCCTGCTTCTCTTCCTTCCTGTTGGTTGTGGGTATCACGCTTGACAACATAGTCTTGAATTGAAACTGGCCTGAATTGTGGAAGGGTTAAGTGTAATGGAATTAAGTTTGGAAACAAACCAATTTAGGTTTGAATTGTGATTCTACCACTTCATCTTGACTGCCTCGCCAAGCCTCAAATTTCCTTGTTTGTCAAATGGAAACAAGCCTCAGGGTGGTAATATTAAATGAGATAATGTTTGTGAAAATTGGCCCTTAGTTTCTTGCTCTCAGTGAATGCAACAGATATGTTTCTGATGCTTCTCTGTCATCAAGGATCCCCCAGAAGAGGCAGAACTGCTGCTACAGAACCTGCAAAGTAGAGG
..........................................................................................................................................................................................................................................................................................................................................................(((........(((((......)))))........)))........((((....(((.(((.(((.((((......)))).)))))).)))....))))..................................................
.........................................................................................................................................................................................................................................................................................................................................................346................................................................................................445................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040029(GSM532914)
G026T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040016(GSM532901)
G645N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532885(GSM532885)
G850N. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR040010(GSM532895)
G529N. (cervix)
.................................................................................................................................................................................................................................................................................................................................................................................TTGTGAAAATTGGCCCTTAGTTTCTTGCTCTCAGTGAATGCAACAGATATGTTTCTGATGC.................................................................61113.0013.0013.00-------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGTGAATGCAACAGATATGT..........................................................................2417.007.00--1.00--2.00------------2.00-----1.00-----------------1.00-------
...............................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAATGCAACAGATATGT..........................................................................2216.006.00--1.00---------2.00--1.00--------------------1.00-1.00-----------
...................................................................................................................................................................................................ACTGGCCTGAATTGTGGAA.........................................................................................................................................................................................................................................................................................1914.004.00-4.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGAATGCAACAGATATGTT.........................................................................2313.003.00--1.002.00----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................TCTTGCTCTCAGTGAATGCA....................................................................................2012.002.00---------2.00----------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAACCTGCAAAGTAGAG.2012.002.00-------------2.00------------------------------------
............................................................................................................................................................................................................AATTGTGGAAGGGTTAAGTG...............................................................................................................................................................................................................................................................................2012.002.00--------------2.00-----------------------------------
..........................................................................................................................................................................................................................................................................................CATCTTGACTGCCTCGCCA..................................................................................................................................................................................................1912.002.00----------------2.00---------------------------------
.........................................................................................................................GTGCATTTCTCCCTGGTGT...................................................................................................................................................................................................................................................................................................................................................................191.000.00----------1.00---------------------------------------
........................................................................................TTTGTACACCCAGCCAAGC....................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----1.00---------------------------------------------
..................................................................................................................................................................................................................................................................GTTTGAATTGTGATTTCTG..........................................................................................................................................................................................................................191.000.00---1.00----------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTGCTCTCAGTGAATGC.....................................................................................2111.001.00------1.00-------------------------------------------
..................................................GCAAGTGACAGTACAGGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------1.00------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCTTCTCTGTCATC.....................................................1811.001.00---------------------1.00----------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGAAGAGGCAGAACTGCT........................2211.001.00--------------------1.00-----------------------------
.........................................................................................................................GTGCATTTCTCCCTGATGT...................................................................................................................................................................................................................................................................................................................................................................191.000.00----------1.00---------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCCCAGAAGAGGCAGAACTGCTG.......................2711.001.00------1.00-------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGTGAATGCAACAGATATG...........................................................................2311.001.00-----1.00--------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAACCTGCAAAGTAGAGG2111.001.00--------1.00-----------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGAACCTGCAAAGTAGA..2111.001.00-------------------------------1.00------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGTGAATGCAACAGATATGTT.........................................................................2511.001.00-----------------------1.00--------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGAGGCAGAACTGCTGCTA....................2411.001.00-----------1.00--------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGCTACAGAAGGAC...........191.000.00-------1.00------------------------------------------
.......................................................................................................................TAGTGCATTTCTCCCTGCCTGT..................................................................................................................................................................................................................................................................................................................................................................221.000.00----1.00---------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTGCTGCTACAGAACCTGCA.........2411.001.00---------------------------1.00----------------------
..................................................GCAAGTGACAGTACAGGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------------1.00-----------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTCTCTGTCATCAAG..................................................1911.001.00----------------------1.00---------------------------
............................................................................................................................................................................................................................................................ATTTAGGTTTGAATTGTGATTC.............................................................................................................................................................................................................................2211.001.00---------------1.00----------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGTGAATGCAACAGATATGA..........................................................................2411.001.00--1.00-----------------------------------------------
...............................................................................................................................................................................................TGAAACTGGCCTGAATTGTGGAA.........................................................................................................................................................................................................................................................................................2311.001.00--------------------------------------------1.00-----
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGTGAATGCAACAGATA.............................................................................2111.001.00--------1.00-----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGAAGAGGCAGAACTGCTGCC.....................251.000.00----------------------------------------1.00---------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGCAGAACTGCTG.......................1911.001.00---------------------------------------1.00----------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAACCTGCAAAGTA....1720.500.50------------------------------------------------0.50-
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACCTGCAAAGTAGA..1720.500.50-----------------------------------------------0.50--

Antisense strand
CCCAGGGCCAGTTTCTTTATGCCTACCGCTGTGTCCTAGGCCCTCATCAGGCAAGTGACAGTACAGGTTGCATGGCTAACCCCAGCCTTTTGTACACCCAGCCTAGATTTCCCTTAGCCTAGTGCATTTCTCCCTGCTTCTCTTCCTTCCTGTTGGTTGTGGGTATCACGCTTGACAACATAGTCTTGAATTGAAACTGGCCTGAATTGTGGAAGGGTTAAGTGTAATGGAATTAAGTTTGGAAACAAACCAATTTAGGTTTGAATTGTGATTCTACCACTTCATCTTGACTGCCTCGCCAAGCCTCAAATTTCCTTGTTTGTCAAATGGAAACAAGCCTCAGGGTGGTAATATTAAATGAGATAATGTTTGTGAAAATTGGCCCTTAGTTTCTTGCTCTCAGTGAATGCAACAGATATGTTTCTGATGCTTCTCTGTCATCAAGGATCCCCCAGAAGAGGCAGAACTGCTGCTACAGAACCTGCAAAGTAGAGG
..........................................................................................................................................................................................................................................................................................................................................................(((........(((((......)))))........)))........((((....(((.(((.(((.((((......)))).)))))).)))....))))..................................................
.........................................................................................................................................................................................................................................................................................................................................................346................................................................................................445................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040029(GSM532914)
G026T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR029130(GSM416759)
DLD2. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040016(GSM532901)
G645N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532885(GSM532885)
G850N. (cervix)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR040010(GSM532895)
G529N. (cervix)
..............................................................................................................................................................................................................................................................................AGTCAAGATGAAGTGGTAGAAT........................................................................................................................................................................................................... 2212.002.00-----------------2.00--------------------------------
...........................................................................CTAACCCCAGCCTTTAGG.................................................................................................................................................................................................................................................................................................................................................................................................................. 182.000.00-------------------------------------1.00---1.00--------
...........................................................................CTAACCCCAGCCTTTAGTG................................................................................................................................................................................................................................................................................................................................................................................................................. 192.000.00-------------------------1.00------1.00-----------------
.................................GCCTGATGAGGGCCTAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1911.001.00----------------------------1.00---------------------
...................................................................................................................................................................................................................................................................................................TGCCTCGCCAAGCCTCATAC........................................................................................................................................................................................ 201.000.00----1.00---------------------------------------------
.............................................................................................................................ATTTCTCCCTGCTTCTCTG............................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------1.00------------------------------------------
...................................................................................................................................CCCTGCTTCTCTTCCCAA.......................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----------------------------1.00--------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAGAACCTGCACGGA..... 191.000.00----------------------------------1.00---------------
..............................................................................................................................................TTCCTTCCTGTTGGTCTAC.............................................................................................................................................................................................................................................................................................................................................. 191.000.00---------------------------------1.00----------------
..............................................................................................................................TTTCTCCCTGCTTCTCCAC.............................................................................................................................................................................................................................................................................................................................................................. 191.000.00------------------------------1.00-------------------
...........................................................................CTAACCCCAGCCTTTAG................................................................................................................................................................................................................................................................................................................................................................................................................... 171.000.00-----------------------------------1.00--------------
.................................................................................................................................................................................................CACAATTCAGGCCAGTTT............................................................................................................................................................................................................................................................................................ 1811.001.00-----------1.00--------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTGCTCTCAGTATAC....................................................................................... 191.000.00-------------------------------------------1.00------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTAGCAGCAGTTCTG................ 1820.500.50----------------------------------------------0.50---
............................................................................................................................GAGAAGCAGGGAGAAATG................................................................................................................................................................................................................................................................................................................................................................. 1840.250.25-------------------------------------------------0.25
...........................GGCCTAGGACACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1580.250.25---------------------------------------------0.25----
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTTCTGTAGCAG.......... 1640.250.25---------------------------------------------0.25----