ID: uc010zgp.1_intron_1_0_chr2_196544773_f.5p
GENE: (2)
chr2:196544723-196544972+


(1)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(3)
BRAIN 		(6)
BREAST 		(13)
CELL-LINE 		(3)
HEART 		(2)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CTAATACTTGTCTCTCTCTTTAAATCTCTTTAGGAAAAATAGAAATGAAGGTACATATGCACACAAAATTTTGCCTCATTTGTTTGCTGACATTTATTTTTCATCATTGCAACCATTGCCATGAAGAACATGACCATGGCCCTGAAGCGCTTCACAGACAGCATCGTGGAATGACAGAATTGGAGCCAAGCAAATTTTCAAAGCAAGCTGCTGAAAATGAAAAAAAATACTATATTGAAAAACTTTTTGA
............................................................................................................((...((..((((((...........))))))..))..))......................................................................................................
....................................................................................85....................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
...............................................................................................ATTTTTCATCATTGCAACCATTGCCATGAAGAACATGACCATGGCCCTGAAGCGCTTCACAGACAGCATCT....................................................................................714.000.00----4.00---------------------------------------------
.............................................................................................................................................................ACAGCATCGTGGAATGACAGAATTGG...................................................................2613.003.00-----3.00--------------------------------------------
.......................................TAGAAATGAAGGTACATATGCACACAA........................................................................................................................................................................................2713.003.00---3.00----------------------------------------------
............................................................................................................................................................................GACAGAATTGGAGCCAAGCAAATTTTCAAA................................................3012.002.00--2.00-----------------------------------------------
......................................................................................................................................CATGGCCCTGAAGCGCG...................................................................................................172.000.00------------1.00----------------------------------1.00--
....................................................................................................................................................................CGTGGAATGACAGAATTGGAGCCAAGCA..........................................................2812.002.00------------------2.00-------------------------------
.........................................................................................ACATTTATTTTTCATCATTG.............................................................................................................................................2012.002.002.00-------------------------------------------------
..AATACTTGTCTCTCTGTG......................................................................................................................................................................................................................................182.000.00-2.00------------------------------------------------
..............................................................................................................................................................CAGCATCGTGGAATGACAGAATTGGA..................................................................2612.002.00---------2.00----------------------------------------
..............................................................................................................................................................CAGCATCGTGGAATGACA..........................................................................1812.002.00-----------2.00--------------------------------------
.............................................................................................................................................................ACAGCATCGTGGAATGACA..........................................................................1912.002.00-2.00------------------------------------------------
.................................................................................................................................ATGACCATGGCCCTGAAGCGCTT..................................................................................................2311.001.00--------------1.00-----------------------------------
............................................................................................................................................................GACAGCATCGTGGAATGAC...........................................................................1911.001.00-----------------1.00--------------------------------
...........................................................................................................................AAGAACATGACCATGGCCCT...........................................................................................................2011.001.00--------------1.00-----------------------------------
...........................................................................................................................................................AGACAGCATCGTGGAATGA............................................................................1911.001.00---------------------------------------------1.00----
...................................................................................................................................GACCATGGCCCTGAAGCGCGT..................................................................................................211.000.00---------------------------1.00----------------------
....................................................................................................................................................................CGTGGAATGACAGAATTGGAGCC...............................................................2311.001.00--1.00-----------------------------------------------
............................................................................................................................................................GACAGCATCGTGGAATGACAGAATTGGA..................................................................2811.001.00----------1.00---------------------------------------
...........................................................................................................................AAGAACATGACCATGGCCCTGAAGCGC....................................................................................................2711.001.00---------------------------------------1.00----------
........................................................................................................................ATGAAGAACATGACCATGGC..............................................................................................................2011.001.00-----------------------------------1.00--------------
.........................................................................................ACATTTATTTTTCATCATGG.............................................................................................................................................201.000.001.00-------------------------------------------------
....................................................................................................................................................................................................................................ACTATATTGAAAAACTTTTTG.2111.001.001.00-------------------------------------------------
......................................................................................................................................CATGGCCCTGAAGCGCGTAA................................................................................................201.000.00-------------------------------------------1.00------
......................................................................................................................................................................TGGAATGACAGAATTGGAGC................................................................2011.001.00----------------------------------1.00---------------
.................................................................................................................................................................CATCGTGGAATGACAGAATTGGA..................................................................2311.001.00------------------------1.00-------------------------
.........................................................................................ACATTTATTTTTCATCATTGCAACCATTG....................................................................................................................................2911.001.00----------------------1.00---------------------------
................................................................................................................................................AAGCGCTTCACAGACAGCATCGCGG.................................................................................251.000.00---------------------------------1.00----------------
...........................................................................................................................AAGAACATGACCATGGCCC............................................................................................................1911.001.00------------------------------------------1.00-------
................................................................................................................................CATGACCATGGCCCTGAAGCG.....................................................................................................2111.001.00------1.00-------------------------------------------
.................................................................................................................................................................CATCGTGGAATGACAGAATTGGAGCCA..............................................................2711.001.00-------------------------------------------------1.00
...................................................................................................................................................................................TTGGAGCCAAGCAAAGT......................................................171.000.00-----------------------------------------1.00--------
......................................................................................................................................................................TGGAATGACAGAATTGGAGCCAAGCA..........................................................2611.001.00-----------------1.00--------------------------------
...................................................TACATATGCACACAAAATTTTG.................................................................................................................................................................................2211.001.00-------1.00------------------------------------------
...........................................................................................................................................................AGACAGCATCGTGGAATGACAGAATTGGAGC................................................................3111.001.00------1.00-------------------------------------------
...........................................................................................................................................CCCTGAAGCGCTTCACAGACAGCAT......................................................................................2511.001.00-1.00------------------------------------------------
.......................................................................................................................................ATGGCCCTGAAGCGCGT..................................................................................................171.000.00--------------------------1.00-----------------------
...........................................................CACACAAAATTTTGCCTCATTTG........................................................................................................................................................................2311.001.00-------1.00------------------------------------------
.................................................................................................................................................................................AATTGGAGCCAAGCAAATTTTCAAAGC..............................................2711.001.00-------------------1.00------------------------------
......................................................................................................................................CATGGCCCTGAAGCGCGTA.................................................................................................191.000.00-------------------------------1.00------------------
............................................................................................................................................................GACAGCATCGTGGAATGACA..........................................................................2011.001.00--------------------------------------1.00-----------
...................................................TACATATGCACACAAACCAT...................................................................................................................................................................................201.000.00-------1.00------------------------------------------
........................................................................................................................ATGAAGAACATGACCATGGCCCTGAAG.......................................................................................................2711.001.00------1.00-------------------------------------------
.......................................................................................................................................ATGGCCCTGAAGCGCTTCACAGACAGCAT......................................................................................2911.001.00----------1.00---------------------------------------
.......................................................................................................................................ATGGCCCTGAAGCGCGTA.................................................................................................181.000.00-----------------------------1.00--------------------
..............................................................................................................................................................CAGCATCGTGGAATGACAGA........................................................................2011.001.00------------1.00-------------------------------------
.....................................................................................................................................................................GTGGAATGACAGAATTGGAGCCAAGCA..........................................................2711.001.00-1.00------------------------------------------------
...............................................................................................................................ACATGACCATGGCCCTGAAGCGCTTCACAGACA..........................................................................................3311.001.00--1.00-----------------------------------------------
...............................AGGAAAAATAGAAATGAAGGTACATATGCACAC..........................................................................................................................................................................................3311.001.00---------1.00----------------------------------------
...........................................................................................ATTTATTTTTCATCAGGA.............................................................................................................................................181.000.00-----------------------1.00--------------------------
.............................................................................................................................................................................ACAGAATTGGAGCCAAGCAA.........................................................2011.001.00----------------------------------------1.00---------
........................................................................................................................ATGAAGAACATGACCATGGCC.............................................................................................................2111.001.00---1.00----------------------------------------------
.................................................................................................................................................................CATCGTGGAATGACAGAATTGG...................................................................2211.001.00-----1.00--------------------------------------------
.............................................................................................................................................................ACAGCATCGTGGAATGACAGAATTGGAGCCAAG............................................................3311.001.00--1.00-----------------------------------------------
.....................................................................................................................................................................GTGGAATGACAGAATTGGAGCCAAGC...........................................................2611.001.00-------------1.00------------------------------------
..........................................................................................CATTTATTTTTCATCATTGCAACCATTGCCAT................................................................................................................................3211.001.00-------------------------------------1.00------------
...............................AGGAAAAATAGAAATGAAGGTAC....................................................................................................................................................................................................2311.001.00----------------------------1.00---------------------
.....................................................................................................................................................................GTGGAATGACAGAATTTGTC.................................................................201.000.00---------------1.00----------------------------------
.................................................................................................................................................................CATCGTGGAATGACAG.........................................................................1611.001.00------------------------------------1.00-------------
.................................................................................................................................ATGACCATGGCCCTGAAGCGCTCCA................................................................................................251.000.00---------------1.00----------------------------------
..........................................................................................................................GAAGAACATGACCATGGCCCT...........................................................................................................2111.001.00------------------------------1.00-------------------
...................................................................................................................................................................TCGTGGAATGACAGAATTGGAGCC...............................................................2411.001.00-------------------------1.00------------------------

Antisense strand
CTAATACTTGTCTCTCTCTTTAAATCTCTTTAGGAAAAATAGAAATGAAGGTACATATGCACACAAAATTTTGCCTCATTTGTTTGCTGACATTTATTTTTCATCATTGCAACCATTGCCATGAAGAACATGACCATGGCCCTGAAGCGCTTCACAGACAGCATCGTGGAATGACAGAATTGGAGCCAAGCAAATTTTCAAAGCAAGCTGCTGAAAATGAAAAAAAATACTATATTGAAAAACTTTTTGA
............................................................................................................((...((..((((((...........))))))..))..))......................................................................................................
....................................................................................85....................................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038853(GSM458536)
MELB. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
..................................................................................................TTTCATCATTGCAACGT....................................................................................................................................... 177.000.00--------2.00----1.00--2.00---1.00-----------------------1.00-----
...........................CTTTAGGAAAAATAGAAAC............................................................................................................................................................................................................ 191.000.00----------------------------------------------1.00---
..............................................................ACAAAATTTTGCCTCAAAAG........................................................................................................................................................................ 201.000.001.00-------------------------------------------------
......................................................................................................................CCATGAAGAACATGAGTG.................................................................................................................. 181.000.00---------------------1.00----------------------------
..................................................................................................TTTCATCATTGCAACGTG...................................................................................................................................... 181.000.00--------1.00-----------------------------------------
.............................................................................ATTTGTTTGCTGACAATTG.......................................................................................................................................................... 191.000.001.00-------------------------------------------------
.................................................................................................................................................................................................................GCTGAAAATGAAAAAGTAC...................... 191.000.00------------------------------------------------1.00-
............................ATTTCTATTTTTCCTAAA............................................................................................................................................................................................................ 1811.001.00--------------------------------1.00-----------------