ID: uc010zgg.1_intron_5_0_chr2_191390105_r.5p
GENE: TMEM194B(1)
chr2:191398538-191398787-


(14)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(6)
SKIN 		(1)
XRN.ip

Sense strand
ACTGTTGTGACCTTGAGCGAGTAAACATAACGGTCCCACGTGAGCGGCAGGTAATGAGGCCTCACAAGGTTCTTGTGGTGTTCGTGTGCACAATGCCTGGCACACAGGAAGCAAGAACTGGTAGCGGCTGCTAGCTGTAGGGGCTCGCCACGGAGTGGGCTTAAGATGCTGGCACACTGGGGAAGGATCTGGGAAGGACACCTGGGGAAGTCAGAAACCTAGAGTTCCAACTCCAGACCTGCCGCTAACT
...................................................................................................((((.(((..........))))).))...(((((((.....((((((((......)))))))).....)))))))............................................................................
..................................................................................................99...........................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR040033(GSM532918)
G603T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
.......................................................................................................ACAGGAAGCAAGAACTGG.................................................................................................................................18115.0015.006.00----2.00--2.00---1.00--2.00-1.00-----------1.00---------------
.........................................................................................................AGGAAGCAAGAACTGGTAG..............................................................................................................................19114.0014.007.003.001.00-----------2.00-------1.00----------------------
.........................................................................................................AGGAAGCAAGAACTGGTA...............................................................................................................................18110.0010.006.00------1.00--1.00-1.00--------------1.00-----------------
.......................................................................................................ACAGGAAGCAAGAACTGGTA...............................................................................................................................2017.007.003.00--2.00---------------------------1.00-----------1.00-
.....................................................................................................................................................ACGGAGTGGGCTTAAGATGCTGG..............................................................................2315.005.00--5.00------------------------------------------
.......................................................................................................ACAGGAAGCAAGAACTGGTAG..............................................................................................................................2115.005.001.003.00--------1.00----------------------------------
.........................................................................................................AGGAAGCAAGAACTGGTAGCGG...........................................................................................................................2214.004.00-3.00----------------------------1.00--------------
...............................................................ACAAGGTTCTTGTGGTGTTCGT.....................................................................................................................................................................2214.004.00----4.00----------------------------------------
............................................................................................................AAGCAAGAACTGGTAGCGG...........................................................................................................................1914.004.004.00--------------------------------------------
...........................................................................................................................GCGGCTGCTAGCTGTAGGGG...........................................................................................................2013.003.00----2.00------------1.00---------------------------
.........................................................................................................AGGAAGCAAGAACTGGTAGC.............................................................................................................................2012.002.00-------1.00--------------------------------1.00----
.........................................GAGCGGCAGGTAATGTGG...............................................................................................................................................................................................182.000.00-----------1.00--------1.00------------------------
....................................................................................................................................................................................................................................AACTCCAGACCTGCCCGC....182.000.00------2.00--------------------------------------
...........................................................................................................GAAGCAAGAACTGGTAGCG............................................................................................................................1912.002.002.00--------------------------------------------
.........................................................................................................AGGAAGCAAGAACTGGTAGCG............................................................................................................................2112.002.001.00----1.00---------------------------------------
...........................................................................................................GAAGCAAGAACTGGTAGCGG...........................................................................................................................2012.002.00-1.00-----------1.00-------------------------------
.....................................................................................................ACACAGGAAGCAAGAACTGGTA...............................................................................................................................2211.001.00--------------------------------1.00------------
.................................................................AAGGTTCTTGTGGTGCTTG......................................................................................................................................................................191.000.00------------------------------------1.00--------
.....................................................................................................ACACAGGAAGCAAGAACTGG.................................................................................................................................2011.001.00---1.00-----------------------------------------
............................................................................................................................CGGCTGCTAGCTGTAGGGGCT.........................................................................................................2111.001.00----------------1.00----------------------------
......................................................................................................................................................CGGAGTGGGCTTAAGATGCT................................................................................2011.001.00---1.00-----------------------------------------
........................................................................................................CAGGAAGCAAGAACTGGGAG..............................................................................................................................201.000.00---------------------------------1.00-----------
.............................................................................................................AGCAAGAACTGGTAGCGG...........................................................................................................................1811.001.00---1.00-----------------------------------------
...................................................................................................................................................................AGATGCTGGCACACTGGGGAAGG................................................................2311.001.00------1.00--------------------------------------
..................................................................AGGTTCTTGTGGTGTTCGTGTG..................................................................................................................................................................2211.001.00-----1.00---------------------------------------
...........................................................................................................................GCGGCTGCTAGCTGTAGGGGCTCG.......................................................................................................2411.001.00----------------------------1.00----------------
.................................................................................................TGGCACACAGGAAGCAAGAACT...................................................................................................................................2211.001.001.00--------------------------------------------
.........................................................................................................AGGAAGCAAGAACTGGTAGAA............................................................................................................................2111.0014.00-------------1.00-------------------------------
..................................................................................................................................................GCCACGGAGTGGGCTTAAGATGCT................................................................................2411.001.00-------------------------------------1.00-------
......................................................................................................................................................CGGAGTGGGCTTAAGTTTT.................................................................................191.000.00--------------------------1.00------------------
...............................................................................................CCTGGCACACAGGAAGCAAGAACTGG.................................................................................................................................2611.001.00------------------------------------------1.00--
................................................................................................................................................................................CTGGGGAAGGATCTGTA.........................................................171.000.00---------------------1.00-----------------------
..........................................................................................................................AGCGGCTGCTAGCTGTAGGGG...........................................................................................................2111.001.00---------1.00-----------------------------------
....................................................................................................................................................CACGGAGTGGGCTTAAGATG..................................................................................2011.001.00---------1.00-----------------------------------
........................................................................................................................................................................................GGATCTGGGAAGGACTCTG...............................................191.000.00------------------------1.00--------------------
...............................................................................................................................CTGCTAGCTGTAGGGGCTCG.......................................................................................................2011.001.00-----------------------------------1.00---------
..............................................................................................................GCAAGAACTGGTAGCGGCT.........................................................................................................................1911.001.001.00--------------------------------------------
...........................................................................................................GAAGCAAGAACTGGTAGC.............................................................................................................................1811.001.00-----------------------1.00---------------------
........................................................................................................CAGGAAGCAAGAACTCTG................................................................................................................................181.000.00------------------1.00--------------------------
.................................................................................................................AGAACTGGTAGCGGCTGAAAA....................................................................................................................211.000.00----------------1.00----------------------------
....................................CACGTGAGCGGCAGGTAATGA.................................................................................................................................................................................................2111.001.00-------------------------1.00-------------------
............................................................................................................................CGGCTGCTAGCTGTAGGGGC..........................................................................................................2011.001.00-1.00-------------------------------------------
........................................................................................................................................................................CTGGCACACTGGGGAAGGATCTGG..........................................................2411.001.00--1.00------------------------------------------
........................................................................................................CAGGAAGCAAGAACTCG.................................................................................................................................171.000.00---------------------------------------1.00-----
............................................................................................................................CGGCTGCTAGCTGTAGGGG...........................................................................................................1911.001.001.00--------------------------------------------
....................................................................................................................................................................................................................................AACTCCAGACCTGCCCACC...191.000.00------1.00--------------------------------------

Antisense strand
ACTGTTGTGACCTTGAGCGAGTAAACATAACGGTCCCACGTGAGCGGCAGGTAATGAGGCCTCACAAGGTTCTTGTGGTGTTCGTGTGCACAATGCCTGGCACACAGGAAGCAAGAACTGGTAGCGGCTGCTAGCTGTAGGGGCTCGCCACGGAGTGGGCTTAAGATGCTGGCACACTGGGGAAGGATCTGGGAAGGACACCTGGGGAAGTCAGAAACCTAGAGTTCCAACTCCAGACCTGCCGCTAACT
...................................................................................................((((.(((..........))))).))...(((((((.....((((((((......)))))))).....)))))))............................................................................
..................................................................................................99...........................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR040033(GSM532918)
G603T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
......................GCCGCTCACGTGGGACCGTTATGTTT.......................................................................................................................................................................................................... 2612.002.00-2.00-------------------------------------------
................................GCCGCTCACGTGGGAC.......................................................................................................................................................................................................... 1611.001.00----------------------------------1.00----------
.............................................................................AGGCATTGTGCACACGAACAC........................................................................................................................................................ 2111.001.00--------------------------------------1.00------
.......................................................................................................................................................................................................................GAGTTGGAACTCTAGGTT................. 1811.001.00-------------------1.00-------------------------
............................................................................................................................................................................................................................CAGGTCTGGAGTTGGAACTCT......... 2111.001.00-----------------------------------------1.00---
................................................................................................................................................................................................................................TTCCAACTCCAGACCAGA........ 181.000.00-----------1.00---------------------------------
..........................CGCTCACGTGGGACCGTTAT............................................................................................................................................................................................................ 2011.001.00---1.00-----------------------------------------
...........................................................................AGGCATTGTGCACACGAACACCA........................................................................................................................................................ 2311.001.00-------1.00-------------------------------------
....................................................................................................................................................................................................................................CGGCAGGTCTGGAGTT...... 1640.250.25--------------------------------------------0.25