ID: uc010zbt.1_intron_7_0_chr2_149526810_f.3p
GENE: (8)
chr2:149528161-149528410+


(1)
BREAST
(5)
CELL-LINE
(1)
CERVIX
(2)
HEART
(1)
OTHER
(1)
RRP40.ip
(2)
SKIN

Sense strand
TTGGTGAGTGAACTTTTGATTCAATTTTGTAAAATTTAACCTGATTAATAGTCAATGAAGCCCCACTTTTACAGTTTTATATCTAGATTTTAATTGTTCTGCTAATGTTGCAGTTACTTCATGTTTATCATGATCTAACCTGTCTTCATTTCAGATTTACTCCATGAGTTTTTTGTTTTTTGTTTTTTCTTTCTTTGCAGCCTCGTTTGGACCAAGCTAACCATTCATGTGAAAATTCAGAATTGGCAGA
......................................................................................................................(((((.....)))))..................((((...((((...))))..))))...........................................................................
......................................................................................................................119..............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................................................................TGTTTTTTGTTTTTTCTTTAGT.......................................................2210.000.003.002.005.00---------
...........................................................................................................................................................................TTTGTTTTTTGTTTTTTCTTTCGAG......................................................253.000.003.00-----------
.........................................................................................................................................................................TTTTTGTTTTTTGTTTTTTCTCTGC........................................................253.000.00-3.00----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTCCAG............................................................243.000.003.00-----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCCTGC.........................................................273.000.003.00-----------
...............................................................................................................................................................................................................TGGACCAAGCTAACCATTCATGTG...................2413.003.00-3.00----------
........................................................................................................................................................................TTTTTTGTTTTTTGTTTTTTCGGC..........................................................242.000.00-2.00----------
...........................................................................................................................................................................TTTGTTTTTTGTTTTTTCTACTC........................................................232.000.002.00-----------
.............................................................................................................................................................................................................TTTGGACCAAGCTAAAC............................172.000.00---2.00--------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTCCC..............................................................222.000.002.00-----------
.........................................................................................................................................................................TTTTTGTTTTTTGTTTTTTCTTCGGG.......................................................262.000.002.00-----------
..........................................................................................................................................................................TTTTGTTTTTTGTTTTTTCTACTC........................................................242.000.002.00-----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCTTTCCGC......................................................302.000.002.00-----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCTTC..........................................................261.000.00-1.00----------
...............................................................................................................................................................................TTTTTTGTTTTTTCTTTCATT......................................................211.000.00--1.00---------
................................................................................................................................................................................TTTTTGTTTTTTCTTTCTTTACG...................................................231.000.001.00-----------
.................................................................................................................................................................................TTTTGTTTTTTCTTTCTTTTGGC..................................................231.000.00-1.00----------
...............................................................................................................................................................................TTTTTTGTTTTTTCTTTCTTTTAG...................................................241.000.001.00-----------
..................................................................................................................................................................................TTTGTTTTTTCTTTCTTTGCAGT.................................................231.000.001.00-----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCTTGAC........................................................281.000.001.00-----------
...........................................................................................................................................................................TTTGTTTTTTGTTTTTTCTTGTGA.......................................................241.000.00-1.00----------
............................................................................................................................................................................TTGTTTTTTGTTTTTTCTTGAGC.......................................................231.000.001.00-----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCTCTGC........................................................2861.000.330.830.17----------
...........................................................................................................................TTTATCATGATCTAACAAAG...........................................................................................................201.000.00---------1.00--
........................................................................................................................................................................TTTTTTGTTTTTTGTTTTTTCTCCTC........................................................261.000.00-1.00----------
........................................................................................................................................................................TTTTTTGTTTTTTGTTTTTTCGATC.........................................................251.000.001.00-----------
...............................................................................................................................................................................TTTTTTGTTTTTTCTTTCTTTTCCA..................................................251.000.001.00-----------
..........................................................................................................................................................................TTTTGTTTTTTGTTTTTTCTACT.........................................................231.000.00-1.00----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCTTCC.........................................................271.000.001.00-----------
...........................................................................................................................................................................TTTGTTTTTTGTTTTTTCTTGAGG.......................................................241.000.001.00-----------
............................................................................................................................................................................TTGTTTTTTGTTTTTTCTACTC........................................................221.000.001.00-----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCTTTGAG.......................................................291.000.001.00-----------
...................................................................................................................................................................................TTGTTTTTTCTTTCTTAATG...................................................201.000.00--1.00---------
..........................................................................................................................................................................TTTTGTTTTTTGTTTTTTCTCTG.........................................................231.000.001.00-----------
..............................................................................................................................................................................GTTTTTTGTTTTTTCTATTT........................................................201.000.00--1.00---------
.........................................................................................................................................................................TTTTTGTTTTTTGTTTTTTCTTTCTGAG.....................................................281.000.00-1.00----------
.............................................................................................................................................................................TGTTTTTTGTTTTTTCTTTCTTTAG....................................................251.000.00-1.00----------
...........................................................................................................................................................................TTTGTTTTTTGTTTTTTCTTTCTAATC....................................................271.000.00--1.00---------
.............................................................................................................................................................................TGTTTTTTGTTTTTTCTTTGGC.......................................................221.000.001.00-----------
...........................................................................................................................................................................TTTGTTTTTTGTTTTTTCTTGGC........................................................231.000.00-1.00----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTGTGC..............................................................221.000.00-1.00----------
...........................................................................................................................................................................TTTGTTTTTTGTTTTTTCTTTCTCTT.....................................................261.000.001.00-----------
................................................................................................................................................................................TTTTTGTTTTTTCTTTCTTTTGCG..................................................241.000.001.00-----------
................................................................................................................................................................................TTTTTGTTTTTTCTTTCTTAAG....................................................221.000.00--1.00---------
........................................................................................................................................................................TTTTTTGTTTTTTGTTTTTTCTTTCTCTG.....................................................291.000.00--1.00---------
.........................................................................................................................................................................TTTTTGTTTTTTGTTTTTTCTTCGG........................................................251.000.00-1.00----------
.................................................................................................................................................................................TTTTGTTTTTTCTTTCTTGGC....................................................211.000.001.00-----------
.............................................................................................................................................................................TGTTTTTTGTTTTTTCTTTCTTTGCAG..................................................2711.001.00-----1.00------
.................................................................................................................................................................................TTTTGTTTTTTCTTTCTTTTG....................................................211.000.00--1.00---------
...............................................................................................................................................................................TTTTTTGTTTTTTCTTTCTTTCTTC..................................................251.000.00-1.00----------
....................................................................................................................................................................TGAGTTTTTTGTTTTTCGGT..................................................................201.000.00--1.00---------
............................................................................................................................................................................TTGTTTTTTGTTTTTTCTTTAACT......................................................241.000.001.00-----------
.............................................................................................................................................................................TGTTTTTTGTTTTTTCTTAACT.......................................................221.000.00--1.00---------
...........................................................................................................................................................................TTTGTTTTTTGTTTTTTCTTTCCTC......................................................251.000.00-1.00----------
.................................................................................................................................................................................................................................CATGTGAAAATTCAGAATTGGCAGA2511.001.00----1.00-------
............................................................................................................................................................................................................GTTTGGACCAAGCTA...............................1530.330.33-----------0.33
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCTCTG.........................................................2760.330.330.170.17----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCT............................................................2460.330.330.33-----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCTCCC.........................................................2760.170.330.17-----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCTCC..........................................................2660.170.33-0.17----------
......................................................................................................................................................................AGTTTTTTGTTTTTTGTTTTTTCTCGC.........................................................2760.170.330.17-----------

Antisense strand
TTGGTGAGTGAACTTTTGATTCAATTTTGTAAAATTTAACCTGATTAATAGTCAATGAAGCCCCACTTTTACAGTTTTATATCTAGATTTTAATTGTTCTGCTAATGTTGCAGTTACTTCATGTTTATCATGATCTAACCTGTCTTCATTTCAGATTTACTCCATGAGTTTTTTGTTTTTTGTTTTTTCTTTCTTTGCAGCCTCGTTTGGACCAAGCTAACCATTCATGTGAAAATTCAGAATTGGCAGA
......................................................................................................................(((((.....)))))..................((((...((((...))))..))))...........................................................................
......................................................................................................................119..............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................TCTTCATTTCAGATTTC........................................................................................... 171.000.00------1.00-----
............................................................................................................................................................................................CTTTCTTTGCAGCCTGCG............................................ 181.000.00-------1.00----
...............................................................................................................................................................................TTTTTTGTTTTTTCTTTCTTAAAA................................................... 241.000.00--------1.00---
................................................................................................................................................................................TTTTTGTTTTTTCTTTCTTTGTTG.................................................. 241.000.00----------1.00-