ID: uc010yzl.1_intron_7_0_chr2_128281368_r.5p
GENE: IWS1(1)
chr2:128283759-128284008-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(4)
AGO2.ip 		(7)
B-CELL 		(7)
BRAIN 		(15)
BREAST 		(37)
CELL-LINE 		(7)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(4)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(19)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TGCCCGCCCGCCAGCCTGCCGGGTACGGCCTTTTCCGCCGGGGCTTCCAGGTCAAAGAATTCGCCTTTGCCGCTACCGCTTTCTTACCCTCCGCACCCGTTAAGTTCTCCGGTCGGGCGGCAGTCTCTGAACACTTAGCCGCGCCATCCGGGGTCACACCGCCTGGAAGGAGGTGACGGGGGCGGCGCGGGGCGCGGACACTCCCCGCTGAGAGTCCGCCTGCCATGGACTCGGAATATTACAGCGGCGA
...................................................(((.(((........((((((((((((....((((..............)))).....))))..))))))))))).)))........................................................................................................................
..................................................51................................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189783TAX577744(Rovira)
total RNA. (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		TAX577746(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
....................................................CAAAGAATTCGCCTTTTG....................................................................................................................................................................................18928.000.00911.0012.00-------3.00--------------------1.00---------------------------------------------------------------------1.00----------
....................................................CAAAGAATTCGCCTTGTG....................................................................................................................................................................................1869.000.0068.001.00-------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTAG....................................................................................................................................................................................1857.000.0056.001.00-------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTT....................................................................................................................................................................................1844.000.0044.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTGGG..................................................................................................................................................................................2037.000.001.00--2.001.004.00----2.00---2.00-3.002.00----1.00----1.00-2.00-2.001.001.00-1.00----------------1.00----1.00---1.00-1.00-1.00-----1.00--1.00--1.00------------1.001.00----1.00--------------
....................................................CAAAGAATTCGCCTTTGG....................................................................................................................................................................................18124.0022.0023.001.00-------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTG.....................................................................................................................................................................................17122.0022.0016.006.00-------------------------------------------------------------------------------------------------------------
.....................................................AAAGAATTCGCCTTTTG....................................................................................................................................................................................1718.000.0016.001.00-------1.00-----------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTA....................................................................................................................................................................................1813.000.0013.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTGG...................................................................................................................................................................................1912.000.001.00----1.00--2.00-1.00-1.00-----------------------1.00---1.001.00---------------------------------1.001.00-----1.00----------------------------
....................................................CAAAGAATTCGCCTTTTC....................................................................................................................................................................................1812.000.0012.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTGGGGC.................................................................................................................................................................................2118.0022.00---3.002.00-----1.00----------------------------------1.00---1.00-------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTCG....................................................................................................................................................................................186.000.006.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTT.....................................................................................................................................................................................175.000.005.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTATG....................................................................................................................................................................................185.000.005.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTGGG....................................................................................................................................................................................185.000.005.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTTGG..................................................................................................................................................................................204.000.00---------------1.00--------------------------------------------1.00-----1.00-----------------1.00--------------------------
...................................................................................................................................CACTTAGCCGCGCCATCCGGGGTCACACCGCCTGGAAGGAGGTGACGGGGGCGGCGCGGGGCGCGGA....................................................6714.004.00-----------4.00---------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTAGAC..................................................................................................................................................................................204.000.004.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTGAC..................................................................................................................................................................................204.000.004.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTGTC....................................................................................................................................................................................183.000.003.00--------------------------------------------------------------------------------------------------------------
.......................................GGGGCTTCCAGGTCAAAGAATTCGC..........................................................................................................................................................................................2513.003.00--3.00------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTAT....................................................................................................................................................................................183.000.003.00--------------------------------------------------------------------------------------------------------------
...................................................TCAAAGAATTCGCCTTTTG....................................................................................................................................................................................192.000.002.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTCGGG..................................................................................................................................................................................202.000.00---------------1.00--------------------1.00--------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CTCGGAATATTACAGCGGCGA2112.002.00------1.00--------------------------1.00-----------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTGGTGC.................................................................................................................................................................................2112.0022.00----2.00----------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTCG.....................................................................................................................................................................................172.000.001.001.00-------------------------------------------------------------------------------------------------------------
.................................................................................................................CGGGCGGCAGTCTCTGAA.......................................................................................................................1812.002.00-------------2.00-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................TGGACTCGGAATATTACAGCG....2112.002.00---------------------2.00-----------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTG......................................................................................................................................................................................162.000.001.001.00-------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTGGGG..................................................................................................................................................................................2012.0022.00--------1.00--------1.00---------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................ATGGACTCGGAATATTACAGCGGC..2412.002.00-------------------------1.00---------------------------------1.00---------------------------------------------------
..............................................................................................................................................................................GACGGGGGCGGCGCGCGC..........................................................182.000.00-------------------------------------------------------1.00-----------------------------------------1.00-------------
.............................................TCCAGGTCAAAGAATTCG...........................................................................................................................................................................................1812.002.00------2.00--------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTGCG....................................................................................................................................................................................182.000.001.001.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................GACGGGGGCGGCGCGCG...........................................................172.000.00-------1.00-----------------------------------------------------------------------1.00-------------------------------
.....................................................................................................................................................................................................................................CTCGGAATATTACAGCGGCG.2012.002.00--1.00---1.00--------------------------------------------------------------------------------------------------------
.....................................................................................................AAGTTCTCCGGTCGGGCGGCA................................................................................................................................2112.002.00------------------------2.00--------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTAC....................................................................................................................................................................................182.000.002.00--------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................ACTCGGAATATTACAGCGGCG.2111.001.00-----------------------------------------------1.00---------------------------------------------------------------
..............................................................................................................................................................................................................................CCATGGACTCGGAATA............1611.001.00------------------------------1.00--------------------------------------------------------------------------------
..............................................................................................................................................................................GACGGGGGCGGCGCGCGCG.........................................................191.000.00--------------------------------------1.00------------------------------------------------------------------------
.........................................................................................................TCTCCGGTCGGGCGGCGG...............................................................................................................................181.000.00----------------------------------------------------------------1.00----------------------------------------------
........................................................................................................TTCTCCGGTCGGGCGGCAG...............................................................................................................................1911.001.00----------------------------1.00----------------------------------------------------------------------------------
.............................CTTTTCCGCCGGGGCTTCCAG........................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------------1.00---------------------
....................................................CAAAGAATTCGCCTTTTGAG..................................................................................................................................................................................201.000.00--------------------------1.00------------------------------------------------------------------------------------
................................................................................................................................................................................CGGGGGCGGCGCGGGTGCG.......................................................191.000.00-------------------------------------1.00-------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTAGG....................................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................ATGGACTCGGAATATT..........1611.001.00---------------------------------------------------------------------------------1.00-----------------------------
....................................................CAAAGAATTCGCCTTTTGGT..................................................................................................................................................................................201.000.00---------------------------------------------------1.00-----------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTCAC..................................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTC.....................................................................................................................................................................................171.000.001.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTAGGG..................................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTGTCG..................................................................................................................................................................................2011.0022.001.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTAGAG..................................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------------------------------------------
....................................................................................................TAAGTTCTCCGGTCGGGCG...................................................................................................................................1911.001.00------------------------------------------------1.00--------------------------------------------------------------
....................................................CAAAGAATTCGCCTTGAG....................................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTCT....................................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTGCCCT.................................................................................................................................................................................211.000.001.00--------------------------------------------------------------------------------------------------------------
......................................................................................................................................TTAGCCGCGCCATCCGGGGTCACAC...........................................................................................2511.001.00---------------------------------------------------------------------------------------------1.00-----------------
.....................................................................................................AAGTTCTCCGGTCGGGCGGCAGTCT............................................................................................................................2511.001.00-------------------------------------1.00-------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTGGGGT.................................................................................................................................................................................2111.0022.00---------------1.00-----------------------------------------------------------------------------------------------
................................................................................................................................................................................CGGGGGCGGCGCGGGGCCGGA.....................................................211.000.00---------------------------------------------------------------------------------------------------1.00-----------
.....................................................AAAGAATTCGCCTTTCG....................................................................................................................................................................................171.000.001.00--------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................ATGGACTCGGAATATTACAGCGGCG.2511.001.00----------------------------------1.00----------------------------------------------------------------------------
................................................................................................................................................................................CGGGGGCGGCGCGGGGCGCGAGC...................................................231.000.00---------------------------------------1.00-----------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTGCG..................................................................................................................................................................................201.000.00--------1.00------------------------------------------------------------------------------------------------------
...............................................................................................................GTCGGGCGGCAGTCTC...........................................................................................................................1611.001.00-------------------------------------------1.00-------------------------------------------------------------------
.....................................................AAAGAATTCGCCTTTAG....................................................................................................................................................................................171.000.001.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTAGTC..................................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................ATGGACTCGGAATATTACAGC.....2111.001.00-------1.00-------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTGGT....................................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------------------------------------------
.............................CTTTTCCGCCGGGGCTTCCAGGTCAA...................................................................................................................................................................................................2611.001.00--------------------------------------------------------------------------------------------1.00------------------
....................................................CAAAGAATTCGCCTTCCG....................................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------------------------------------------
.GCCCGCCCGCCAGCCTGCCGGGTACGGCC............................................................................................................................................................................................................................2911.001.00-------1.00-------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTGTT..................................................................................................................................................................................201.000.00--------------------------------1.00------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTCTC....................................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------------------------------------------
......CCCGCCAGCCTGCCGGGTACGG..............................................................................................................................................................................................................................2211.001.00-----------------------1.00---------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTTTG..................................................................................................................................................................................201.000.00---1.00-----------------------------------------------------------------------------------------------------------
...................................................TCAAAGAATTCGCCTGTAG....................................................................................................................................................................................191.000.001.00--------------------------------------------------------------------------------------------------------------
......................................................................................................AGTTCTCCGGTCGGGCGGCAG...............................................................................................................................2111.001.00------------1.00--------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTGT...................................................................................................................................................................................191.000.001.00--------------------------------------------------------------------------------------------------------------
............................................................................................................CCGGTCGGGCGGCAGTCT............................................................................................................................1811.001.00-----------------------------------------------------------------------------------------------1.00---------------
....................................................CAAAGAATTCGCCTTTTGCC..................................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------------------------------------------
................................................................................................CCGTTAAGTTCTCCGGTCGGGCGGC.................................................................................................................................2511.001.00----------------------------------------------1.00----------------------------------------------------------------
.....................................................................................................AAGTTCTCCGGTCGGGCGGC.................................................................................................................................2011.001.00---------------------------------------------------------------------1.00-----------------------------------------
.......................................................................................................GTTCTCCGGTCGGGCGGCAGGCT............................................................................................................................2311.001.00----------------------------------1.00----------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTGTGCT.................................................................................................................................................................................2111.0022.00--------------------------1.00------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTATAG..................................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------------------------------------------
...........................................................................................................TCCGGTCGGGCGGCAGT..............................................................................................................................1711.001.00--------------------1.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................GGGCGGCGCGGGGCGCCCAG...................................................201.000.00--------------------------------------------------1.00------------------------------------------------------------
...................................................................................................................................................................................GGGCGGCGCGGGGCGTCG.....................................................181.000.00------------------------------------------------------1.00--------------------------------------------------------
..................................CCGCCGGGGCTTCCA.........................................................................................................................................................................................................1521.001.00-----------------------------------------------------------------------------------------------------------0.500.50--
....................................................................................................................................................................................................................................ACTCGGAATATTACAGCG....1811.001.00--------------------------------------------1.00------------------------------------------------------------------
.....................................................................................................................CGGCAGTCTCTGAACTCTG..................................................................................................................191.000.00---------------------------------------------------------------------------------------1.00-----------------------
.....................................................................................................AAGTTCTCCGGTCGGGCGGCAGTC.............................................................................................................................2411.001.00-------------------------1.00-------------------------------------------------------------------------------------
...............................................................................................................................TGAACACTTAGCCGCGCC.........................................................................................................1811.001.00-----------------------------------------------------------------------------------------------------1.00---------
.....................................................AAAGAATTCGCCTTTTT....................................................................................................................................................................................171.000.001.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTGCTC..................................................................................................................................................................................2011.001.001.00--------------------------------------------------------------------------------------------------------------
....................................................................................................................GCGGCAGTCTCTGAACACTTAG................................................................................................................2211.001.00------------------------------------------------------------------------------1.00--------------------------------
...............................................................................................................................................................................................................CTGAGAGTCCGCCTGCC..........................1711.001.00------------1.00--------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GGGGGCGGCGCGGGGCGCGGGA...................................................221.000.00----------------------------1.00----------------------------------------------------------------------------------
.................................................................................................................CGGGCGGCAGTCTCTGAAC......................................................................................................................1911.001.00------------------1.00--------------------------------------------------------------------------------------------
................................................................................................................TCGGGCGGCAGTCTCTGAACACTT..................................................................................................................2411.001.00----------------------------------------------------------------------1.00----------------------------------------
.....................................................................................................................................................................................GCGGCGCGGGGCGCGACA...................................................181.000.00----------------------------------------------------------------------------------------1.00----------------------
.....................................................AAAGAATTCGCCTTTGG....................................................................................................................................................................................171.000.001.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................GCCATGGACTCGGAATATTACAGC.....2411.001.00-----------------------------------------------------1.00---------------------------------------------------------
.............................................................................................................CGGTCGGGCGGCAGTCTC...........................................................................................................................1811.001.00-------------------------------------------------------------------------------------------------------1.00-------
....................................................CAAAGAATTCGCCTTTTTAC..................................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------------------------------------------
.......................................................................................................GTTCTCCGGTCGGGCGGCAG...............................................................................................................................2011.001.00---------------------------1.00-----------------------------------------------------------------------------------
.................................................................................................................................................................................................................................TGGACTCGGAATATTACAGCGGCGA2511.001.00------------------1.00--------------------------------------------------------------------------------------------
........................................................................................................................................................................................GCGCGGGGCGCGGACATGG...............................................191.000.00-1.00-------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTTGGA..................................................................................................................................................................................201.000.00--------------------------------------------------------------------------------------1.00------------------------
..........................................................................................................CTCCGGTCGGGCGGCAGTC.............................................................................................................................1911.001.00------------------------------------------------------------------------1.00--------------------------------------
....CGCCCGCCAGCCTGCCGGGTACGGCCTTTT........................................................................................................................................................................................................................3011.001.00-----------------------------------------------------------------------------------1.00---------------------------
....................................................CAAAGAATTCGCCTTTGC....................................................................................................................................................................................1811.001.00--------------------------------------------------------1.00------------------------------------------------------
.................................................................................................................................................................................................................................TGGACTCGGAATATTACAGCGGC..2311.001.00-----------------------1.00---------------------------------------------------------------------------------------
.......................................................................................................GTTCTCCGGTCGGGCGGCAGTCT............................................................................................................................2311.001.00-------------------------------------------------------------------------------------1.00-------------------------
...........................................................................................................TCCGGTCGGGCGGCAGTCTCTGAAC......................................................................................................................2511.001.00------------------1.00--------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTTATAC..................................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------------------------------------------
..........................................................................................................CTCCGGTCGGGCGGCAGTCT............................................................................................................................2011.001.00--------------------------------------------------------------------1.00------------------------------------------
....................................................CAAAGAATTCGCCTTCGG....................................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------------------------------------------
....................................................CAAAGAATTCGCCTTGTT....................................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------------------------------------------
..CCCGCCCGCCAGCCTGCCGGGTA.................................................................................................................................................................................................................................2311.001.00-------1.00-------------------------------------------------------------------------------------------------------
.............................CTTTTCCGCCGGGGC..............................................................................................................................................................................................................1530.670.67-------------------0.67-------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................ACTCCCCGCTGAGAGT...................................1620.500.50---------------------------------------------------------------------------------------------------------0.50-----
.......................................................AGAATTCGCCTTTGC....................................................................................................................................................................................1520.500.50--------------------------------------0.50------------------------------------------------------------------------
...........................................CTTCCAGGTCAAAGAATT.............................................................................................................................................................................................1820.500.50--------------------0.50------------------------------------------------------------------------------------------
...............................................................................................................................................................................ACGGGGGCGGCGCGG............................................................1560.170.17--------------------------------------------------------------------------------------------------------------0.17

Antisense strand
TGCCCGCCCGCCAGCCTGCCGGGTACGGCCTTTTCCGCCGGGGCTTCCAGGTCAAAGAATTCGCCTTTGCCGCTACCGCTTTCTTACCCTCCGCACCCGTTAAGTTCTCCGGTCGGGCGGCAGTCTCTGAACACTTAGCCGCGCCATCCGGGGTCACACCGCCTGGAAGGAGGTGACGGGGGCGGCGCGGGGCGCGGACACTCCCCGCTGAGAGTCCGCCTGCCATGGACTCGGAATATTACAGCGGCGA
...................................................(((.(((........((((((((((((....((((..............)))).....))))..))))))))))).)))........................................................................................................................
..................................................51................................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189783TAX577744(Rovira)
total RNA. (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		TAX577746(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR037938(GSM510476)
293Red. (cell line)		SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
...............................................................................................ACCGGAGAACTTAACGGG......................................................................................................................................... 1812.002.00----------------------1.00---------------------------------------------------------------------------------1.00------
.............................................................................................................................................GCGGTGTGACCCCGGATGGCG........................................................................................ 2112.002.00--2.00------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................AGGCGGACTCTCAGCGGG............................. 1811.001.00----------------------------------------------------------------------------------------------1.00----------------
.............................................................................................CCCGACCGGAGAACTTAACGGGTG..................................................................................................................................... 2411.001.00------------------------------------------1.00--------------------------------------------------------------------
.........................................................................................................................................TGTGACCCCGGATGGCGCGGC............................................................................................ 2111.001.00-------------------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................AGTCCGCCTGCCATGTTG.................... 181.000.00-------------1.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GTAATATTCCGAGTCCATGGCAG........ 2311.001.00------------------------------------------------------------------------------------------------------1.00--------
......................................................................................................................CGGCTAAGTGTTCAGAGACTGCC............................................................................................................. 2311.001.00--------------------------------------------------------------------------------1.00------------------------------
...........................................................................................................................................................................................................CGGACTCTCAGCGGG................................ 1511.001.00-------------------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................................................GACTCTCAGCGGGGAGTGTC.................................. 2011.001.00-------------------------------------------------------------------1.00-------------------------------------------
........................................................................................................................................AGCCGCGCCATCCGGGTGGT.............................................................................................. 201.000.00----------------------------------------------------------1.00----------------------------------------------------
..................................................................................................................................................................................................CTCTCAGCGGGGAGTGTCCG.................................... 2011.001.00--------------------------------------------------------------1.00------------------------------------------------
..........................................................................................................................................TGTGACCCCGGATGGCGCGG............................................................................................ 2011.001.00--1.00------------------------------------------------------------------------------------------------------------
.................................................................................................................................................AGGCGGTGTGACCCCGGAT...................................................................................... 1911.001.00--------------------------------------------------------------------------------------------------1.00------------
..............................................................................................................................................CGGTGTGACCCCGGATGGC......................................................................................... 1911.001.00--------------1.00------------------------------------------------------------------------------------------------
.................................................................................................AGAGACTGCCGCCCGACCGGAGAACTTAACG.......................................................................................................................... 3111.001.00--------------------1.00------------------------------------------------------------------------------------------
................................................................................................CCCGACCGGAGAACTTAACGG..................................................................................................................................... 2111.001.00------1.00--------------------------------------------------------------------------------------------------------
............................................................................................CCCGACCGGAGAACTTAACGGGTGC..................................................................................................................................... 2511.001.00--1.00------------------------------------------------------------------------------------------------------------
............................................................................................................................CTCTGAACACTTAGCCGCC........................................................................................................... 191.000.00-----------------------------------1.00---------------------------------------------------------------------------
.........................................................AATTCGCCTTTGCCGCATAG............................................................................................................................................................................. 201.000.00-1.00-------------------------------------------------------------------------------------------------------------
.......CCGCCAGCCTGCCGGGCGGC............................................................................................................................................................................................................................... 201.000.00-------------------------------------------------------------------------1.00-------------------------------------
...........................CCCGGCGGAAAAGGC................................................................................................................................................................................................................ 1530.670.67------------0.33------------------------------------------------------------------------------------------------0.33-
.................................................................................................................................................................................CCGCGCCCCGCGCCGCCCCC..................................................... 2020.500.50----------------------------------------------------------------------------------------------------------0.50----