ID: uc010yzf.1_intron_6_0_chr2_127821595_r.5p
GENE: (6)
chr2:127826300-127826549-


(2)
AGO2.ip
(1)
BRAIN
(2)
BREAST
(10)
CELL-LINE
(6)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(2)
LIVER
(2)
OTHER
(23)
SKIN
(1)
TESTES

Sense strand
ACGAGTCCCTTCAAACTGCCAAAAAGAAGGATGAAGCCAAAATTGCCAAGGTAAGGGCTGGAGGCGGGTCGGGGCAGCGTCTGCAGGGGGCTGAGAGAGGGCGGGTGTCTAGGACCCCGAGGGTGGAGGCTTCCTCCTGCCTGGCCCCAGGTGGCTGAACTGGGGGTGGGGACGATACAGGGCCCAGGCCGGTGAGTGAGAGGCCCTTGTGGGTGCCTGGGTGAGGTCCACCCTAGGCCCATTCCTGCCC
...............................................................(((((..((((.(((.(((((.((((.((......((((....)))).)).))))....))))).))))))))))))..............................................................................................................
...........................................................60..............................................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189785SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040029(GSM532914)
G026T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR040031(GSM532916)
G013T. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040006(GSM532891)
G601N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................CGGGTCGGGGCAGCGGCG........................................................................................................................................................................18120.003.0010.006.00-----1.00----1.00---1.00---1.00----------------------------
................................................................CGGGTCGGGGCAGCGGC.........................................................................................................................................................................17112.003.006.003.00----------------1.00----------1.00---1.00---------------
................................................................CGGGTCGGGGCAGCGG..........................................................................................................................................................................1616.003.00------1.00-1.00--------1.00--------------1.00-------1.00--1.00-----
...............................................................GCGGGTCGGGGCAGCGGC.........................................................................................................................................................................1816.001.001.001.00--------1.00--------------1.00-----1.00---------1.00-------
................................................................CGGGTCGGGGCAGCGGCGG.......................................................................................................................................................................1915.003.00-----2.00-----------------1.00-----------1.001.00------------
.............AACTGCCAAAAAGAAGGATGAAGC.....................................................................................................................................................................................................................2413.003.00--3.00----------------------------------------------
................................................................CGGGTCGGGGCAGCG...........................................................................................................................................................................1513.003.00-1.00----1.00------------------------------1.00-----------
...............................................................GCGGGTCGGGGCAGCA...........................................................................................................................................................................162.000.00---------2.00---------------------------------------
...............................................................GCGGGTCGGGGCAGCGG..........................................................................................................................................................................1712.001.00-------1.00------------------------------1.00----------
............................................................GAGGCGGGTCGGGGCGG.............................................................................................................................................................................172.000.00---2.00---------------------------------------------
...............CTGCCAAAAAGAAGGAGGC........................................................................................................................................................................................................................191.000.00------------------------------1.00------------------
......................................................................................................................GAGGGTGGAGGCTTCGAC..................................................................................................................181.000.00------------------------1.00------------------------
................................................................CGGGTCGGGGCAGCGGCTT.......................................................................................................................................................................1911.003.00-------------1.00-----------------------------------
...........................................................GGAGGCGGGTCGGGGCGG.............................................................................................................................................................................181.000.00-----------1.00-------------------------------------
..................................................GTAAGGGCTGGAGGCGGATA....................................................................................................................................................................................201.000.00--1.00----------------------------------------------
.......................AAGAAGGATGAAGCCAAAAT...............................................................................................................................................................................................................2011.001.00--1.00----------------------------------------------
................................................................CGGGTCGGGGCAGCGGCGT.......................................................................................................................................................................1911.003.00---------------------------------------1.00---------
...............................................................GCGGGTCGGGGCAGCG...........................................................................................................................................................................1611.001.00----------------------1.00--------------------------
..............................................................GGCGGGTCGGGGCAGTGGG.........................................................................................................................................................................191.000.00----------------------------1.00--------------------
.............................................................................................AGAGAGGGCGGGTGTGTAG..........................................................................................................................................191.000.00---------------------------1.00---------------------
...........................................................................................................................................................................ACGATACAGGGCCCAGGGGAC..........................................................211.000.00----1.00--------------------------------------------
...............................................................GCGGGTCGGGGCAGCGGCG........................................................................................................................................................................1911.001.00--------1.00----------------------------------------
............................................................................................GAGAGAGGGCGGGTGTGTAG..........................................................................................................................................201.000.00---------------1.00---------------------------------
...............................................................GCGGGTCGGGGCAGCAG..........................................................................................................................................................................171.000.00----------------------------------1.00--------------
...........................................................................................................................................................................ACGATACAGGGCCCAT...............................................................161.000.00----1.00--------------------------------------------
...................................................................................................................................................CAGGTGGCTGAACTGGGGGTG..................................................................................2111.001.00--------------------------1.00----------------------
.................................................................GGGTCGGGGCAGCGTC.........................................................................................................................................................................1611.001.001.00------------------------------------------------
...........................................................GGAGGCGGGTCGGGGCG..............................................................................................................................................................................171.000.00---1.00---------------------------------------------
...............................................................GCGGGTCGGGGCAGCGGCGG.......................................................................................................................................................................2011.001.00---------------------1.00---------------------------
............................................................GAGGCGGGTCGGGGCAGGGAT.........................................................................................................................................................................211.000.00-------------------1.00-----------------------------
...........................................................................................................................................................................ACGATACAGGGCCCATTCG............................................................191.000.00----1.00--------------------------------------------
........................AGAAGGATGAAGCCAAAA................................................................................................................................................................................................................1820.500.50--0.50----------------------------------------------
.........................GAAGGATGAAGCCAAAATT..............................................................................................................................................................................................................1920.500.50---------------------------------------------0.50---
..........................................................................................................................................................CTGAACTGGGGGTGGGG...............................................................................1770.140.14-----------------------------------------------0.14-
................................................................................CTGCAGGGGGCTGAGA..........................................................................................................................................................1690.110.11------------------------------------------------0.11

Antisense strand
ACGAGTCCCTTCAAACTGCCAAAAAGAAGGATGAAGCCAAAATTGCCAAGGTAAGGGCTGGAGGCGGGTCGGGGCAGCGTCTGCAGGGGGCTGAGAGAGGGCGGGTGTCTAGGACCCCGAGGGTGGAGGCTTCCTCCTGCCTGGCCCCAGGTGGCTGAACTGGGGGTGGGGACGATACAGGGCCCAGGCCGGTGAGTGAGAGGCCCTTGTGGGTGCCTGGGTGAGGTCCACCCTAGGCCCATTCCTGCCC
...............................................................(((((..((((.(((.(((((.((((.((......((((....)))).)).))))....))))).))))))))))))..............................................................................................................
...........................................................60..............................................................................140............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189785SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040029(GSM532914)
G026T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR040031(GSM532916)
G013T. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040006(GSM532891)
G601N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................AAAAAGAAGGATGAAGTAG................................................................................................................................................................................................................... 192.000.00------------------------------------------1.00-1.00----
..................CCAAAAAGAAGGATGATG...................................................................................................................................................................................................................... 181.000.00--------------1.00----------------------------------
................................................................................................................................GGCCAGGCAGGAGGAAGC........................................................................................................ 1840.250.25----------------------------------------------0.25--