ID: uc010yzf.1
GENE: BIN1(11)
chr2:127808049-127808427-


(1)
AGO1.ip OTHER.mut 		(3)
B-CELL 		(8)
BRAIN 		(6)
BREAST 		(13)
CELL-LINE 		(1)
FIBROBLAST 		(8)
LIVER 		(2)
OTHER 		(14)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
GCGGCAGTGGGGCCGGGCGCTTGGACCTGCCCCCAGGTTTCATGTTCAAGGTGAGCCCACAGCCTCTGACTGCTGCAGTCCCTCGGTGCCCTGGTGGGCAGATGAGAACCCTGAGCCTCAGGAGACTCTGTGGTTTGCCCAAAGTTGTGCAGGCGCTACTAGGTCACTCCCAGCCAGCAAGGTGGCATCTGAGCCCCATACTGTCCTGCTGCTTTTGAGCACTCCTGGTCTCCATACTGCCACCTGCACCTCCCACACGCAAGGCCCGTGCTCTGTGCAGGGCTGGAGGTGGGACGGAAGGTCTGACTTGCGATCCGCATCCTCTGCAGGTACAGGCCCAGCACGACTACACGGCCACTGACACAGACGAGCTGCAGCT
...................................................................................................................................................................................................................................................................................((((((...(((.(((((.((.(((......))).)).))))).)))))))))...................................................
..............................................................................................................................................................................................................................................................................271.......................................................329................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
....................................................................................................................................................................................................................................................................................................................TGCGATCCGCATCCTCTGCAGT.................................................22117.001.00--1.003.00--------1.00--2.00---1.00--1.001.001.00------1.00-----1.00-----1.00-----1.00-1.00-1.00------
.............................................................................................................................................................................................................................................................................................................................................................CACGGCCACTGACACAGACGAGCTG.....2514.004.00-4.00----------------------------------------------------------
...................................................................................................................................................................................................................................................................................TGCAGGGCTGGAGGTGGGACG...................................................................................2113.003.00----3.00-------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................ACGGCCACTGACACAGACGAGCTGC....2512.002.00----------------------------------1.00---------------1.00---------
....................................................................................................................................................................................................................................................................................................................TGCGATCCGCATCCTCTGCAGTA................................................2312.001.00------------------1.00----------------1.00------------------------
........................................................................................................................................................................................................................................................CCTCCCACACGCAAGGCTTGC..............................................................................................................212.000.00-----------------1.00--------------------1.00---------------------
......................................................................................................................................................................................................................................................................................AGGGCTGGAGGTGGGACA...................................................................................181.000.00-----------------------------1.00------------------------------
..............................................................CCTCTGACTGCTGCAGGAAG.........................................................................................................................................................................................................................................................................................................201.000.001.00-----------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................TACACGGCCACTGACACAGACGAGC.......2511.001.00-----1.00------------------------------------------------------
.......................................................................GCTGCAGTCCCTCGGTG...................................................................................................................................................................................................................................................................................................1711.001.00-----------------------------------------------1.00------------
......................................................................................................................................................................................................................................................................................................................................................................TGACACAGACGAGCTGCA...1811.001.00-1.00----------------------------------------------------------
......................................................................................................................................................................................................................................................................................AGGGCTGGAGGTGGGACGCGGG...............................................................................221.000.00----------------------------------------1.00-------------------
.......................................................................................................................................................................................................................................................................................................................................................CGACTACACGGCCACTGACACAGACGA.........2711.001.00--1.00---------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................ACTGACACAGACGAGCTGCA...2011.001.00------------------------------------------1.00-----------------
..................................................................................................................................................................................................................................................................................GTGCAGGGCTGGAGGTGGGA.....................................................................................2011.001.00---------------------1.00--------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................CGGCCACTGACACAGACGAGCTGC....2411.001.00-----------1.00------------------------------------------------
...........................................................................................................................................................................................................................................ACTGCCACCTGCACCTCCCAGA..........................................................................................................................221.000.00------------------------------------------------1.00-----------
....................................................................................................................................................................................................................................................................................................................TGCGATCCGCATCCTCTGCAA..................................................2111.001.00------------------------------1.00-----------------------------
........................................................................................................................................................................................................................................................CCTCCCACACGCAAGGCTT................................................................................................................191.000.00--------------------1.00---------------------------------------
.............................................................................................................................................................................................................................................................................................................................................AGGCCCAGCACGACTACACGG.........................2111.001.00-------1.00----------------------------------------------------
.............................................TCAAGGTGAGCCCACCCCA...........................................................................................................................................................................................................................................................................................................................191.000.001.00-----------------------------------------------------------
...............................................................................................GGGCAGATGAGAACCCTGAGACC.....................................................................................................................................................................................................................................................................231.000.00------------------------------------1.00-----------------------
.....................................................................................................................................................................................................................................................................................CAGGGCTGGAGGTGGTGGG...................................................................................191.000.00---------1.00--------------------------------------------------
..........................................................................................................................................................................................................................................................................................................AGGTCTGACTTGCGAAAC...............................................................181.000.00------1.00-----------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................ACGACTACACGGCCACTG...................1811.001.00--1.00---------------------------------------------------------
......................................................................................................TGAGAACCCTGAGCCTCA...................................................................................................................................................................................................................................................................1811.001.00---------------------------------------------1.00--------------
...............................................................................................................................................................................AGCAAGGTGGCATCTGAGCCCCAT....................................................................................................................................................................................2411.001.00--------------------------------------------1.00---------------
...........................................................................................................................................................................................................................................................................................................GGTCTGACTTGCGATCCGC.............................................................1911.001.00----------------------------------------------------1.00-------
....................................................................................................................................................................................................................................................................................................................TGCGATCCGCATCCTCTGCAGTAA...............................................2411.001.00---1.00--------------------------------------------------------
....................................................................ACTGCTGCAGTCCCTCGCTG...................................................................................................................................................................................................................................................................................................201.000.001.00-----------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGCGATCCGCATCCTCTGCA...................................................2011.001.00------------1.00-----------------------------------------------
......GTGGGGCCGGGCGCTTG....................................................................................................................................................................................................................................................................................................................................................................1711.001.00--------------------------------1.00---------------------------
..............................................................................................................................................................................................................................................................................................................................................................ACGGCCACTGACACAGACGAA........211.000.00----------------------------1.00-------------------------------
.............................................................................................................................................................ACTAGGTCACTCCCAGGCAT..........................................................................................................................................................................................................201.000.00--------------------------1.00---------------------------------
.......................................................................................................................AGGAGACTCTGTGGTTTG..................................................................................................................................................................................................................................................1811.001.00-----------1.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................CGGCCACTGACACAGACGAGC.......2111.001.00--1.00---------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................ACTACACGGCCACTGACACAGA............2211.001.00-------1.00----------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................ACTACACGGCCACTGACACAGACG..........2411.001.00------1.00-----------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................CAGCACGACTACACGGCCACTGACACAGACG..........3111.001.00------1.00-----------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................ACTACACGGCCACTGACACAGAC...........2311.001.00-------1.00----------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................ACACGGCCACTGACACAGA............1911.001.00---------1.00--------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TGCGATCCGCATCCTCTGCAG..................................................2111.001.00---------------------------------------1.00--------------------
......................................................................................................................CAGGAGACTCTGTGGTTT...................................................................................................................................................................................................................................................1820.500.50--------------------------------------------------------0.50---
.............................................................................................................................................................................................................................................................................................................................................AGGCCCAGCACGACT...............................1520.500.50-------------------------------------------------------0.50----
..............................................................................................................................................................................CAGCAAGGTGGCATC..............................................................................................................................................................................................1580.380.38----------------------------------------------------------0.38-
........................................................................................................................................................................................................................................................CCTCCCACACGCAAG....................................................................................................................1550.200.20-----------------------------------------------------------0.20

Antisense strand
GCGGCAGTGGGGCCGGGCGCTTGGACCTGCCCCCAGGTTTCATGTTCAAGGTGAGCCCACAGCCTCTGACTGCTGCAGTCCCTCGGTGCCCTGGTGGGCAGATGAGAACCCTGAGCCTCAGGAGACTCTGTGGTTTGCCCAAAGTTGTGCAGGCGCTACTAGGTCACTCCCAGCCAGCAAGGTGGCATCTGAGCCCCATACTGTCCTGCTGCTTTTGAGCACTCCTGGTCTCCATACTGCCACCTGCACCTCCCACACGCAAGGCCCGTGCTCTGTGCAGGGCTGGAGGTGGGACGGAAGGTCTGACTTGCGATCCGCATCCTCTGCAGGTACAGGCCCAGCACGACTACACGGCCACTGACACAGACGAGCTGCAGCT
...................................................................................................................................................................................................................................................................................((((((...(((.(((((.((.(((......))).)).))))).)))))))))...................................................
..............................................................................................................................................................................................................................................................................271.......................................................329................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191450(GSM715560)
145genomic small RNA (size selected RNA from . (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
..........GGCCGGGCGCTTGGAGC................................................................................................................................................................................................................................................................................................................................................................ 175.000.00--------1.00-----2.00-1.00------------------------1.00------------------
................................................................................................................................................................................GCAAGGTGGCATCTGACGAT....................................................................................................................................................................................... 201.000.00---------------------------1.00--------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................ACAGACGAGCTGCAGATTG 191.000.001.00-----------------------------------------------------------
..........GGCCGGGCGCTTGGAA................................................................................................................................................................................................................................................................................................................................................................. 161.000.00----------1.00-------------------------------------------------
..................................................GTGAGCCCACAGCCTAAT....................................................................................................................................................................................................................................................................................................................... 181.000.00-------------1.00----------------------------------------------
..........GGCCGGGCGCTTGGAGCG............................................................................................................................................................................................................................................................................................................................................................... 181.000.00----------1.00-------------------------------------------------
........................................CATGTTCAAGGTGAGCTCA................................................................................................................................................................................................................................................................................................................................ 191.000.001.00-----------------------------------------------------------
.........................................................................................................................................................................................................TGTCCTGCTGCTTTTCATA............................................................................................................................................................... 191.000.00-------------1.00----------------------------------------------
....................TGAACATGAAACCTGGGGGCAGGTCCAA........................................................................................................................................................................................................................................................................................................................................... 2811.001.00-----1.00------------------------------------------------------
..........TCCAAGCGCCCGGCC.................................................................................................................................................................................................................................................................................................................................................................. 1511.001.00-------------------------1.00----------------------------------
........GGGGCCGGGCGCTTGGGC................................................................................................................................................................................................................................................................................................................................................................. 181.000.00--------1.00---------------------------------------------------
.....................................................................CTGCTGCAGTCCCTCGAGT................................................................................................................................................................................................................................................................................................... 191.000.00----------------------------------------------1.00-------------
............................................................................................................................................................................................................................................................................................................................TGCTGGGCCTGTACCTGCAGAGGATGC.................................... 2711.001.00-----1.00------------------------------------------------------
..........GGCCGGGCGCTTGGAGA................................................................................................................................................................................................................................................................................................................................................................ 171.000.00---------------------------------1.00--------------------------
.....................................................................................................................................................................................................................................................................AGGCCCGTGCTCTGTGCATTT................................................................................................. 211.000.001.00-----------------------------------------------------------
........CAAGCGCCCGGCCCC.................................................................................................................................................................................................................................................................................................................................................................... 1540.750.75--------0.50-------0.25-------------------------------------------
........GGGGCCGGGCGCTTGGG.................................................................................................................................................................................................................................................................................................................................................................. 170.500.00---------------------------------------------------------0.50--
........CCAAGCGCCCGGCCCC................................................................................................................................................................................................................................................................................................................................................................... 1620.500.50------------------------------------------------------0.50-----